BAC Information

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BAC

Clone NameB6Ng01-272D13
Chromosome12 (Build37)
Map Location 8,682,090 - 8,815,155
singlet/doubletdoublet
Overlap genePum2, F730043H23, Sdc1
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154
Downstream geneLaptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272D13.bB6Ng01-272D13.g
ACCGA074103GA074104
length1,1301,164
definitionB6Ng01-272D13.b B6Ng01-272D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,682,090 - 8,683,203)(8,814,004 - 8,815,155)
sequence
gaattcagacgttttatgtacaaaagaagacatgctatgatagttttttt
cagatttaaagaaatctggaggaaggggttttctgtgatgatttcaggag
aaatgtttttaaatgcttagcagggtgcagtgcctggaaacgatacagtg
tgtcacgaaagcagttttaaggagttaccttggcgtgtttgaagcttgtt
caccgcttagattcgtgactcctaaccatgtgaccgggtgaatggaggat
ggtttagggaattctggccaggaatcctgttaaaaatacaaagatggatt
atttttaattggttaataataagcctctgttgctagtccgatatcctgct
gtttataaatgatttacatcatgtgaccagtcataagtaattgtctgcat
gttctttaactgaagaatgtctttaaaatgattctgggagagattaagtt
ctgtagggttgtctttgatgttttggagcacagctgttcgacatgaaaaa
gttacaataacttttttatttcagaaacttgctacagtattcagggcttt
aattttatttttctcattttatcagtctagcagatttaccttaactggat
ttgccaggagcacttttaaacattttcagacaatctaagctgatttaata
aaatttctttgtcttgagtctaaagttcctttaggtagttcatatttagt
aagattttaaagtaattttttctttaaaattatattacatttttgtgtaa
cttcttgtctgtgttggtggcttgtgtatggaggtcagaggacagattgt
gagagttacttctctcctcccaccgtgtgggtcctggggatgggactcag
gttgtctggctgtaggtcctccacctctactttgttacctctactttgtt
gcctgcccaaaattttaaagtaacttagtatgggtacaaaaccatggatt
ttcttttcctcttctttggtaatgttgagatagttctcttttaaaaatgt
tattttttcaacatcagaaggtactaatcaatttaggccaggtggtggac
atccagaccgctgaccaaggactgctgtgtggtgttagtgtatgttgggg
tgtttgttcttggtattatatcctgaaata
gaattctttagatagcacgcatagggctcagactacaccagaagtgccag
cgcagtactgagttaaagttgtgccaagtcctcatggactctgtcacaca
aggtatggacaacccagcagacatgatggtgttgactgggagcatgaaga
atttttgaggttcattgctgtgggtacaggtaggggagccagggttgagc
ccaccccatctactatagcatcatttattcaggagagtgatggtaaaggc
ctgagaaaccttctgggacccacccaaccctgtgcaggataccagagcag
ctccagttggaggccctttagagtttctgctttcccagttccctgaggga
gattgggcgcagaagcctttaccgggaagatctgcttcctcttgggattt
cccagtaacctccctcaggtcatcaggcagcttcacacactgctgcagtt
caaagaggctaggaaaattagagtcctgtatcccagggcccagggggagc
tagacctgtgtgggtaactctgctcagacaagcctgatttacggtcatcc
tagccatacccggaacacttttaagaaggaggtcaggggggtcatctgaa
caggaagttcttaggtcacatcaaatgttccatgtcacagtcccttcact
gaacctatttccaggaagtcatcagtctcaggatagggcctttcggtata
actgtcacaggttggggccaaccagcacttctgctattaagtgcatgtga
taaaagcccctgctgtaggcactggccactcactgaaattcccagaagtc
ctatgacagcccagctcagggaagagtatccatactaccaggacctccag
ggacaacctgaggaagcgaggggggggggggcttgcagcaaaagtcagct
gtcgtactcctgttgagggatgatgatgctatgaaagggccctggcaact
ttctctctgttgcatattatttgcttctccctggggttctaatggttgag
tccaccaaggcagctaccttgaactgggactaatcaagcaagaacaaacc
tccagtggtggccttacctccctcccaatcagaactgctgtgtggtgaca
aagcttgttcttaggaagaccaacacacattcaacttccttccgaatgga
accccacgacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8682090_8683203
seq2: B6Ng01-272D13.b_46_1175

seq1  GAATTCAGACGTTTTATGTACAAAAGAAGACATGCTATGATAGTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACGTTTTATGTACAAAAGAAGACATGCTATGATAGTTTTTTT  50

seq1  CAGATTTAAAGAAATCTGGAGGAAGGGGTTTTCTGTGATGATTTCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTAAAGAAATCTGGAGGAAGGGGTTTTCTGTGATGATTTCAGGAG  100

seq1  AAATGTTTTTAAATGCTTAGCAGGGTGCAGTGCCTGGAAACGATACAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTTAAATGCTTAGCAGGGTGCAGTGCCTGGAAACGATACAGTG  150

seq1  TGTCACGAAAGCAGTTTTAAGGAGTTACCTTGGCGTGTTTGAAGCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGAAAGCAGTTTTAAGGAGTTACCTTGGCGTGTTTGAAGCTTGTT  200

seq1  CACCGCTTAGATTCGTGACTCCTAACCATGTGACCGGGTGAATGGAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTTAGATTCGTGACTCCTAACCATGTGACCGGGTGAATGGAGGAT  250

seq1  GGTTTAGGGAATTCTGGCCAGGAATCCTGTTAAAAATACAAAGATGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGGAATTCTGGCCAGGAATCCTGTTAAAAATACAAAGATGGATT  300

seq1  ATTTTTAATTGGTTAATAATAAGCCTCTGTTGCTAGTCCGATATCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTGGTTAATAATAAGCCTCTGTTGCTAGTCCGATATCCTGCT  350

seq1  GTTTATAAATGATTTACATCATGTGACCAGTCATAAGTAATTGTCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAATGATTTACATCATGTGACCAGTCATAAGTAATTGTCTGCAT  400

seq1  GTTCTTTAACTGAAGAATGTCTTTAAAATGATTCTGGGAGAGATTAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTAACTGAAGAATGTCTTTAAAATGATTCTGGGAGAGATTAAGTT  450

seq1  CTGTAGGGTTGTCTTTGATGTTTTGGAGCACAGCTGTTCGACATGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGTTGTCTTTGATGTTTTGGAGCACAGCTGTTCGACATGAAAAA  500

seq1  GTTACAATAACTTTTTTATTTCAGAAACTTGCTACAGTATTCAGGGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAATAACTTTTTTATTTCAGAAACTTGCTACAGTATTCAGGGCTTT  550

seq1  AATTTTATTTTTCTCATTTTATCAGTCTAGCAGATTTACCTTAACTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTTTTCTCATTTTATCAGTCTAGCAGATTTACCTTAACTGGAT  600

seq1  TTGCCAGGAGCACTTTTAAACATTTTCAGACAATCTAAGCTGATTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGAGCACTTTTAAACATTTTCAGACAATCTAAGCTGATTTAATA  650

seq1  AAATTTCTTTGTCTTGAGTCTAAAGTTCCTTTAGGTAGTTCATATTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTTGTCTTGAGTCTAAAGTTCCTTTAGGTAGTTCATATTTAGT  700

seq1  AAGATTTTAAAGTAATTTTTTCTTTAAAATTATATTACATTTTTGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTAAAGTAATTTTTTCTTTAAAATTATATTACATTTTTGTGTAA  750

seq1  CTTCTTGTCTGTGTTGGTGGCTTGTGTATGGAGGTCAGAGGACAGATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTCTGTGTTGGTGGCTTGTGTATGGAGGTCAGAGGACAGATTGT  800

seq1  GAGAGTTACTTCTCTCCTCCCACCGTGTGGGTCCTGGGGATGGGACTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTACTTCTCTCCTCCCACCGTGTGGGTCCTGGGGATGGGACTCAG  850

seq1  GTTGTCTGGCTGTAGGTCCTCCACCTCTACTTTGTTACCTCTACTTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGGCTGTAGGTCCTCCACCTCTACTTTGTTACCTCTACTTTGTT  900

seq1  GCCTGCCCAAAATTTTAAAGTAACTTAGTATGGGTACAAAACCATGGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCAAAATTTTAAAGTAACTTAGTATGGGTACAAAACCATGGATT  950

seq1  TTC-TTTCCTCTTCTTT-GTAATGTTGAGATAGTTTCTCTTTTAAAAATG  998
      ||| ||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TTCTTTTCCTCTTCTTTGGTAATGTTGAGATAG-TTCTCTTTTAAAAATG  999

seq1  T--ATTTTTCCACATCAGAA-GTACTAATCAATTTAGGCCAGGTG--TGA  1043
      |   |||||| ||||||||| ||||||||||||||||||||||||   ||
seq2  TTATTTTTTCAACATCAGAAGGTACTAATCAATTTAGGCCAGGTGGTGGA  1049

seq1  CATCCAGAACGCTGACCAA-GACTGCT-TGT-GTGT--ATGTATGT--GG  1086
      |||||||| |||||||||| ||||||| ||| ||||   |||||||  ||
seq2  CATCCAGACCGCTGACCAAGGACTGCTGTGTGGTGTTAGTGTATGTTGGG  1099

seq1  GTGTTTGTTCTT-GTATT-TAT-CTGAAATA  1114
      |||||||||||| ||||| ||| ||||||||
seq2  GTGTTTGTTCTTGGTATTATATCCTGAAATA  1130

seq1: chr12_8814004_8815155
seq2: B6Ng01-272D13.g_65_1228 (reverse)

seq1  GTCTGTCGTGGGTGCCCTATCTGGAGTGAGTTG-ATGTGTGTTGTGTCTC  49
      ||||||||||||   ||  || | ||  ||||| |||||||||| |||| 
seq2  GTCTGTCGTGGGGTTCCATTCGGAAGGAAGTTGAATGTGTGTTG-GTCTT  49

seq1  CCT-AGGACAAGTTTTGT---CACACAGCAG-TCTGATTGGGA-GGAGGT  93
      ||| || ||||| |||||   |||||||||| ||||||||||| ||||||
seq2  CCTAAGAACAAGCTTTGTCACCACACAGCAGTTCTGATTGGGAGGGAGGT  99

seq1  AAAGCCA-CACTGGAGGGTTTTGTCTGCCTGATTAGTCCCCAGGTCAAGG  142
      || |||| ||||||||| || |   ||| |||||||| ||||| ||||||
seq2  AAGGCCACCACTGGAGGTTTGTTCTTGCTTGATTAGT-CCCAGTTCAAGG  148

seq1  TAGCTGCC-TGGT-GACTCAACCATTAGAACCCCAGGGAGAAGCAAAT-A  189
      |||||||| |||| |||||||||||||||||||||||||||||||||| |
seq2  TAGCTGCCTTGGTGGACTCAACCATTAGAACCCCAGGGAGAAGCAAATAA  198

seq1  TATGC-ACAGAGAG-AAGTTGCCAGGGCCCTTTCATAGCATCATCATCCC  237
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TATGCAACAGAGAGAAAGTTGCCAGGGCCCTTTCATAGCATCATCATCCC  248

seq1  TCAACAGGAGTACGACAGCTGACTTTTGCTGCAAG-CCCCCCCCCCCTCG  286
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAACAGGAGTACGACAGCTGACTTTTGCTGCAAGCCCCCCCCCCCCTCG  298

seq1  CTTCCTCAGGTTGTCCCTGGAGGTCCTGGTAGTATGGATACTCTTCCCTG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGGTTGTCCCTGGAGGTCCTGGTAGTATGGATACTCTTCCCTG  348

seq1  AGCTGGGCTGTCATAGGACTTCTGGGAATTTCAGTGAGTGGCCAGTGCCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCTGTCATAGGACTTCTGGGAATTTCAGTGAGTGGCCAGTGCCT  398

seq1  ACAGCAGGGGCTTTTATCACATGCACTTAATAGCAGAAGTGCTGGTTGGC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGGGCTTTTATCACATGCACTTAATAGCAGAAGTGCTGGTTGGC  448

seq1  CCCAACCTGTGACAGTTATACCGAAAGGCCCTATCCTGAGACTGATGACT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCTGTGACAGTTATACCGAAAGGCCCTATCCTGAGACTGATGACT  498

seq1  TCCTGGAAATAGGTTCAGTGAAGGGACTGTGACATGGAACATTTGATGTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAAATAGGTTCAGTGAAGGGACTGTGACATGGAACATTTGATGTG  548

seq1  ACCTAAGAACTTCCTGTTCAGATGACCCCCCTGACCTCCTTCTTAAAAGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAACTTCCTGTTCAGATGACCCCCCTGACCTCCTTCTTAAAAGT  598

seq1  GTTCCGGGTATGGCTAGGATGACCGTAAATCAGGCTTGTCTGAGCAGAGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGGGTATGGCTAGGATGACCGTAAATCAGGCTTGTCTGAGCAGAGT  648

seq1  TACCCACACAGGTCTAGCTCCCCCTGGGCCCTGGGATACAGGACTCTAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACACAGGTCTAGCTCCCCCTGGGCCCTGGGATACAGGACTCTAAT  698

seq1  TTTCCTAGCCTCTTTGAACTGCAGCAGTGTGTGAAGCTGCCTGATGACCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGCCTCTTTGAACTGCAGCAGTGTGTGAAGCTGCCTGATGACCT  748

seq1  GAGGGAGGTTACTGGGAAATCCCAAGAGGAAGCAGATCTTCCCGGTAAAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGTTACTGGGAAATCCCAAGAGGAAGCAGATCTTCCCGGTAAAG  798

seq1  GCTTCTGCGCCCAATCTCCCTCAGGGAACTGGGAAAGCAGAAACTCTAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCGCCCAATCTCCCTCAGGGAACTGGGAAAGCAGAAACTCTAAA  848

seq1  GGGCCTCCAACTGGAGCTGCTCTGGTATCCTGCACAGGGTTGGGTGGGTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCAACTGGAGCTGCTCTGGTATCCTGCACAGGGTTGGGTGGGTC  898

seq1  CCAGAAGGTTTCTCAGGCCTTTACCATCACTCTCCTGAATAAATGATGCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGTTTCTCAGGCCTTTACCATCACTCTCCTGAATAAATGATGCT  948

seq1  ATAGTAGATGGGGTGGGCTCAACCCTGGCTCCCCTACCTGTACCCACAGC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGATGGGGTGGGCTCAACCCTGGCTCCCCTACCTGTACCCACAGC  998

seq1  AATGAACCTCAAAAATTCTTCATGCTCCCAGTCAACACCATCATGTCTGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCTCAAAAATTCTTCATGCTCCCAGTCAACACCATCATGTCTGC  1048

seq1  TGGGTTGTCCATACCTTGTGTGACAGAGTCCATGAGGACTTGGCACAACT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTCCATACCTTGTGTGACAGAGTCCATGAGGACTTGGCACAACT  1098

seq1  TTAACTCAGTACTGCGCTGGCACTTCTGGTGTAGTCTGAGCCCTATGCGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCAGTACTGCGCTGGCACTTCTGGTGTAGTCTGAGCCCTATGCGT  1148

seq1  GCTATCTAAAGAATTC  1152
      ||||||||||||||||
seq2  GCTATCTAAAGAATTC  1164