BAC Information

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BAC

Clone NameB6Ng01-273A16
Chromosome12 (Build37)
Map Location 75,608,566 - 75,609,760
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273A16.bB6Ng01-273A16.g
ACCGA074713GA074714
length1,1841,117
definitionB6Ng01-273A16.b B6Ng01-273A16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtagatccgctgccggggaatctatcagttagatcaacaagac
tgcaaattacattttctccacgtgagcagaatttaagtggagaagatgta
aatggagttccggtaacttcatctatccttaacgctttacttggggttga
gatggcctcttgggtgcagcaacctgccttatgcacacacccacagctgg
cagcagcttgcaatactgccagtcaggctcactagcatggggggagcttt
gatcatttatttcatgaagtgatttttgaatttaatgtctcgacagaatc
gtcagccatttagtgttgggaccccgtggagaagacagcagcgcccaagt
gatggatatcttcatggctcttcattttcgctaaagacaagaaaatcatt
gcagaggaaataaaactcaacatttgccagatgttcccatcaatatctcc
ctgtactttctctcctgtaccagtaaaaacaaaattaacattccgcaaat
gtggggaagttctaagcagtgctcaaaaacagtatactagaatttaactg
ctgagggacgttgctgggtccttggttagaatcctttaattatcagcttg
gatatgcctgcatggaaagaccgtgaaattttccaaaacattttttttct
ttatttcttaaaaatgacttgttcctcattttgagttgacatttggagat
tactattgaggttggttgcccttgctcagggatttgactgagaagtgagc
agcactggtctccttcagtttataccaacagttctcaacctgtgggttgt
gacccttttcgagggtcacatatcagatatcctgcatatcagataaatat
cataatgcatatattatgattcataactgagcaaaattacagttataaag
tagcaacaaagataatatatagtcagggggggtcaccacgataggagaaa
ccatattcacgaatgacagcataaggaaggttgaaaagcactgggtttat
atgaccatgttatgaacatgtaaacgatcattttctctaacagcaactta
agagtttagcactactctaacacatctcaggggtatttcgtggcctcatg
ttttaaatattaacccattcttcataacctttaagtagtaaattaaactg
cttataggttctaatgttgacccttgtttgaaag
gaattctttctttaatactttgctgttaacattatgttttctatggaatt
tcaaagcctctagttaacttcttatcaatagctgatcaatttcaatatta
ccttgtgccagagggcgtggcaggcccatatggatcttatatgtgttata
tacaatgaatgactcctattcctggtcatttgctgtagctgagtaaatag
tgaagtcaatttagatcatcctgaataagttcagcagtctctatgtgtaa
atcaacactttctgcatattgagtcacttattgtattaagagactcttga
aaatctgacaacaccatgagtattgaatacaattcagatttttgaaccaa
tttatagggactctcagccaccttgcttacactttctgatttatatccta
ccttttctgattattagtattagtgtaaattgtaggggttcaagaaattg
gaattctttttattatacaagggagaatccaattagttctttttaggaac
tgaagtcacttgcctttagggtatttgttggtaatctcttccatgaaatt
actgcatgatctttgccggggttcatcctgtgcccataatgaggcaattt
ctgcattagtaaaattaaaatgtaccactatttcagctggatccattcca
gctaattgtcaaagtctcatttttctttttagtatcagttcagaaaactt
ttcttttttttttttttttttttttttttttttccatttttttattaggt
atttagctcatttacatttccaatgctatacccaaaagtccccctttacc
cacccacccccacttcccctacccacccactcccccctttggccctggcg
ttccctggtaccggggcaacacaaagttctgcgtgtccaaagggcctctc
ttttcagtgatggccgactaagccatcctttgatacatatgcagcctaaa
gtcagagctcatgggctactgttagtccatatgttttcactataaggtga
agatccttagctctgggatctttctagctcctcatgggagcctggatcat
catagctgaacgtgacatcactttctgtttggcatgccggaattctcaca
agagaaacgctcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75608566_75609760
seq2: B6Ng01-273A16.b_46_1229

seq1  GAATTCTGTAGATCCGCTGCCGGGGAATCTATCAGTTAGATCAACAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGATCCGCTGCCGGGGAATCTATCAGTTAGATCAACAAGAC  50

seq1  TGCAAATTACATTTTCTCCACGTGAGCAGAATTTAAGTGGAGAAGATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTACATTTTCTCCACGTGAGCAGAATTTAAGTGGAGAAGATGTA  100

seq1  AATGGAGTTCCGGTAACTTCATCTATCCTTAACGCTTTACTTGGGGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTTCCGGTAACTTCATCTATCCTTAACGCTTTACTTGGGGTTGA  150

seq1  GATGGCCTCTTGGGTGCAGCAACCTGCCTTATGCACACACCCACAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTCTTGGGTGCAGCAACCTGCCTTATGCACACACCCACAGCTGG  200

seq1  CAGCAGCTTGCAATACTGCCAGTCAGGCTCACTAGCATGGGGGGAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTTGCAATACTGCCAGTCAGGCTCACTAGCATGGGGGGAGCTTT  250

seq1  GATCATTTATTTCATGAAGTGATTTTTGAATTTAATGTCTCGACAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTATTTCATGAAGTGATTTTTGAATTTAATGTCTCGACAGAATC  300

seq1  GTCAGCCATTTAGTGTTGGGACCCCGTGGAGAAGACAGCAGCGCCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCATTTAGTGTTGGGACCCCGTGGAGAAGACAGCAGCGCCCAAGT  350

seq1  GATGGATATCTTCATGGCTCTTCATTTTCGCTAAAGACAAGAAAATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATATCTTCATGGCTCTTCATTTTCGCTAAAGACAAGAAAATCATT  400

seq1  GCAGAGGAAATAAAACTCAACATTTGCCAGATGTTCCCATCAATATCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAAATAAAACTCAACATTTGCCAGATGTTCCCATCAATATCTCC  450

seq1  CTGTACTTTCTCTCCTGTACCAGTAAAAACAAAATTAACATTCCGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTCTCTCCTGTACCAGTAAAAACAAAATTAACATTCCGCAAAT  500

seq1  GTGGGGAAGTTCTAAGCAGTGCTCAAAAACAGTATACTAGAATTTAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAGTTCTAAGCAGTGCTCAAAAACAGTATACTAGAATTTAACTG  550

seq1  CTGAGGGACGTTGCTGGGTCCTTGGTTAGAATCCTTTAATTATCAGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGACGTTGCTGGGTCCTTGGTTAGAATCCTTTAATTATCAGCTTG  600

seq1  GATATGCCTGCATGGAAAGACCGTGAAATTTTCCAAAACATTTTTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCTGCATGGAAAGACCGTGAAATTTTCCAAAACATTTTTTTTCT  650

seq1  TTATTTCTTAAAAATGACTTGTTCCTCATTTTGAGTTGACATTTGGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTAAAAATGACTTGTTCCTCATTTTGAGTTGACATTTGGAGAT  700

seq1  TACTATTGAGGTTGGTTGCCCTTGCTCAGGGATTTGACTGAGAAGTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGAGGTTGGTTGCCCTTGCTCAGGGATTTGACTGAGAAGTGAGC  750

seq1  AGCACTGGTCTCCTTCAGTTTATACCAACAGTTCTCAACCTGTGGGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTCTCCTTCAGTTTATACCAACAGTTCTCAACCTGTGGGTTGT  800

seq1  GACCCTTTTCGAGGGTCACATATCAGATATCCTGCATATCAGATAAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTTCGAGGGTCACATATCAGATATCCTGCATATCAGATAAATAT  850

seq1  CATAATGCATATATTATGATTCATAACTGAGCAAAATTACAGTTATAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGCATATATTATGATTCATAACTGAGCAAAATTACAGTTATAAAG  900

seq1  TAGCAACAAAGATAATATATAGTCAGGGGGGGTCACCACGATAGGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAAAGATAATATATAGTCAGGGGGGGTCACCACGATAGGAGAAA  950

seq1  CCATATTCACGAATGACAGCATTAGGAAGGTTGAAAAGCACT-GGTTTAT  999
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CCATATTCACGAATGACAGCATAAGGAAGGTTGAAAAGCACTGGGTTTAT  1000

seq1  ATGACCATGTTATGAACATGTAAACGAACCATTTTCTCCTAACAGCAACT  1049
      |||||||||||||||||||||||||| | |||||||| ||||||||||||
seq2  ATGACCATGTTATGAACATGTAAACG-ATCATTTTCT-CTAACAGCAACT  1048

seq1  TAAAGAGTTTTAGCACTAACTCTAACACCATCTCCAGGGTATTTTCGTGG  1099
      | ||||| ||||||||| ||||||||| ||||||  ||||| ||||||||
seq2  T-AAGAG-TTTAGCACT-ACTCTAACA-CATCTCAGGGGTA-TTTCGTGG  1093

seq1  CCCTCAATGTTTTAAATATT-ACCCAATCCTCATAA-CTTTATGTAAGTA  1147
       |||| |||||||||||||| ||||| || |||||| ||||| || ||||
seq2  -CCTC-ATGTTTTAAATATTAACCCATTCTTCATAACCTTTAAGT-AGTA  1140

seq1  AATATAAAATGTGCTTATAAGGTTCT-ATGTTGAAACCTTGTTTGAAAG  1195
      ||| ||||   ||||||| ||||||| |||||| | |||||||||||||
seq2  AAT-TAAA--CTGCTTAT-AGGTTCTAATGTTG-ACCCTTGTTTGAAAG  1184