BAC Information

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BAC

Clone NameB6Ng01-273N13
Chromosome12 (Build37)
Map Location 90,550,067 - 90,685,765
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneEG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273N13.bB6Ng01-273N13.g
ACCGA075309GA075310
length8681,102
definitionB6Ng01-273N13.b B6Ng01-273N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,684,902 - 90,685,765)(90,550,067 - 90,551,180)
sequence
gaattcttttctatgtcttcaggtttaagggctattcaagatgtctgtat
ctatgaccagttgtatctggccacttgtctgtatccatgtctctgtgtgt
gtgtatgtgtgtctgtctgtctgtgtatgtatgtgcatatgtgtgtgtgt
atgtgtctatgtcgctgtgtgttcatgtgtatgtctatctgtgtgcacaa
aattctcctttgttttcagtttcccatccccctactctctctttgctcta
tttctctcctcctagtttcccaaacatcactgagagagtatgctacaaag
gggtcattgtctcctatacttgtgttttccactctgggctgtctggacag
aggtaaagctctattgctttcctctggctcaaagataagacatcatggac
actgcaaggacaaagctgaaccactgaaagttgagaactctaggattccc
atggaaagaagcattcaggagcacaggagcctgagagagagcatcatgaa
cctaatctcatagtaaaattacttccatactctggtatgataacaggcaa
catttctctgtttgatagctgaggagatctatattacatcaaaatagtcc
accaaaattctctgatgaatggacagagcacctaagtttctcatgtaatt
atcaaccaatatgattatttcttggaggggtaatgtgattactaaaattg
gagggcaaagtgaatattttgttacgaagatactaaaaatataatatgaa
aagaacaaagatctaaatctgtaaaatatccatacttttatttttctctc
ttagcacacacacacacacacacacacacacactctctctctctatgact
ctctctctctctctctct
gaattccctagtaacttagatttttactaattttcttttgctgtatatcc
cattaccattgacttagctgtttgaaacaacatatatatcatttctgtag
gttatacatttaggccagggttagttcgtttcttctcctttaggctttgg
aaccccgttaacttagttatttttttcattgctatgccaaaataccacca
ccaaggcaaacttataaaagaaggtatttaattgggcttacacttttaga
aagttagagtctctgatggcggagcaaaggcggggccgaggggacagctg
aaagcactatgatctgcatgtaggagacaaagatagcacactggggatgg
cacaagtcttttgaaacctccagtggcataccttgtgccacaaagtataa
taattttcccaaataataccgttaactggaaagcaactattcaacatatg
aggttatgagggtctttttttttttttttcatttcaaccactacacctga
ctttaggccaggattgagagttgggctttttatttacttttttagccaca
tgtaattgcaggtatgattcatttcttaacagctacaggactgaggccat
tagctcctagaaggtgccctctagggaccttttccataggtgactcagga
tgtaaacatgttttcctgaaagacaacagtttttttttttttttttcaaa
tgtctagtaggaacaagcctcccatgagcattgctatcttcattttcttg
gaaccaagtcacagctccccttgtcttgattcaagagaccatgcaaaggt
gtggggaacctaaagctcaggagatgattggggatctcactaggatctgg
tcacatactctaagtgcagcaacctcagtcaagtcatagagcactctcct
acctgtatagttcttggattgtatcagagaaagagttcattcttctaaag
aaaaaagatatcagatgcttaggcaagtgaacatttttttttttttgcat
ctccagcactatgaccaaagattggatgcagaatttgattcgtataggaa
caggctcagtctcagacacttgaacaaagctaccctggatagtgtcgaga
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90684902_90685765
seq2: B6Ng01-273N13.b_47_914 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAG----AGAGAGAGAGAGTGTGTGTGTGTGTG  46
      ||||||||||||||||||||    ||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGTCATAGAGAGAGAGAGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGCTAAGAGAGAAAAATAAAAGTATGGATATTTTACAG  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGCTAAGAGAGAAAAATAAAAGTATGGATATTTTACAG  100

seq1  ATTTAGATCTTTGTTCTTTTCATATTATATTTTTAGTATCTTCCTAACAA  146
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTTAGATCTTTGTTCTTTTCATATTATATTTTTAGTATCTTCGTAACAA  150

seq1  AATATTCACTTTGCCCTCCAATTTTAGTAATCACATTACCCCTCCAAGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACTTTGCCCTCCAATTTTAGTAATCACATTACCCCTCCAAGAA  200

seq1  ATAATCATATTGGTTGATAATTACATGAGAAACTTAGGTGCTCTGTCCAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATATTGGTTGATAATTACATGAGAAACTTAGGTGCTCTGTCCAT  250

seq1  TCATCAGAGAATTTTGGTGGACTATTTTGATGTAATATAGATCTCCTCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGAATTTTGGTGGACTATTTTGATGTAATATAGATCTCCTCAG  300

seq1  CTATCAAACAGAGAAATGTTGCCTGTTATCATACCAGAGTATGGAAGTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAACAGAGAAATGTTGCCTGTTATCATACCAGAGTATGGAAGTAA  350

seq1  TTTTACTATGAGATTAGGTTCATGATGCTCTCTCTCAGGCTCCTGTGCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATGAGATTAGGTTCATGATGCTCTCTCTCAGGCTCCTGTGCTC  400

seq1  CTGAATGCTTCTTTCCATGGGAATCCTAGAGTTCTCAACTTTCAGTGGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCTTCTTTCCATGGGAATCCTAGAGTTCTCAACTTTCAGTGGTT  450

seq1  CAGCTTTGTCCTTGCAGTGTCCATGATGTCTTATCTTTGAGCCAGAGGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGTCCTTGCAGTGTCCATGATGTCTTATCTTTGAGCCAGAGGAA  500

seq1  AGCAATAGAGCTTTACCTCTGTCCAGACAGCCCAGAGTGGAAAACACAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGAGCTTTACCTCTGTCCAGACAGCCCAGAGTGGAAAACACAAG  550

seq1  TATAGGAGACAATGACCCCTTTGTAGCATACTCTCTCAGTGATGTTTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGACAATGACCCCTTTGTAGCATACTCTCTCAGTGATGTTTGGG  600

seq1  AAACTAGGAGGAGAGAAATAGAGCAAAGAGAGAGTAGGGGGATGGGAAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGAGGAGAGAAATAGAGCAAAGAGAGAGTAGGGGGATGGGAAAC  650

seq1  TGAAAACAAAGGAGAATTTTGTGCACACAGATAGACATACACATGAACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAAAGGAGAATTTTGTGCACACAGATAGACATACACATGAACAC  700

seq1  ACAGCGACATAGACACATACACACACACATATGCACATACATACACAGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGACATAGACACATACACACACACATATGCACATACATACACAGAC  750

seq1  AGACAGACACACATACACACACACAGAGACATGGATACAGACAAGTGGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACACACATACACACACACAGAGACATGGATACAGACAAGTGGCC  800

seq1  AGATACAACTGGTCATAGATACAGACATCTTGAATAGCCCTTAAACCTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAACTGGTCATAGATACAGACATCTTGAATAGCCCTTAAACCTGA  850

seq1  AGACATAGAAAAGAATTC  864
      ||||||||||||||||||
seq2  AGACATAGAAAAGAATTC  868

seq1: chr12_90550067_90551180
seq2: B6Ng01-273N13.g_64_1165

seq1  GAATTCCCTAGTAACTTAGATTTTTACTAATTTTCTTTTGCTGTATATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGTAACTTAGATTTTTACTAATTTTCTTTTGCTGTATATCC  50

seq1  CATTACCATTGACTTAGCTGTTTGAAACAACATATATATCATTTCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCATTGACTTAGCTGTTTGAAACAACATATATATCATTTCTGTAG  100

seq1  GTTATACATTTAGGCCAGGGTTAGTTCGTTTCTTCTCCTTTAGGCTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACATTTAGGCCAGGGTTAGTTCGTTTCTTCTCCTTTAGGCTTTGG  150

seq1  AACCCCGTTAACTTAGTTATTTTTTTCATTGCTATGCCAAAATACCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGTTAACTTAGTTATTTTTTTCATTGCTATGCCAAAATACCACCA  200

seq1  CCAAGGCAAACTTATAAAAGAAGGTATTTAATTGGGCTTACACTTTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAAACTTATAAAAGAAGGTATTTAATTGGGCTTACACTTTTAGA  250

seq1  AAGTTAGAGTCTCTGATGGCGGAGCAAAGGCGGGGCCGAGGGGACAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGTCTCTGATGGCGGAGCAAAGGCGGGGCCGAGGGGACAGCTG  300

seq1  AAAGCACTATGATCTGCATGTAGGAGACAAAGATAGCACACTGGGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTATGATCTGCATGTAGGAGACAAAGATAGCACACTGGGGATGG  350

seq1  CACAAGTCTTTTGAAACCTCCAGTGGCATACCTTGTGCCACAAAGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTCTTTTGAAACCTCCAGTGGCATACCTTGTGCCACAAAGTATAA  400

seq1  TAATTTTCCCAAATAATACCGTTAACTGGAAAGCAACTATTCAACATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCCAAATAATACCGTTAACTGGAAAGCAACTATTCAACATATG  450

seq1  AGGTTATGAGGGTCTTTTTTTTTTTTTTTCATTTCAACCACTACACCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGAGGGTCTTTTTTTTTTTTTTTCATTTCAACCACTACACCTGA  500

seq1  CTTTAGGCCAGGATTGAGAGTTGGGCTTTTTATTTACTTTTTTAGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGCCAGGATTGAGAGTTGGGCTTTTTATTTACTTTTTTAGCCACA  550

seq1  TGTAATTGCAGGTATGATTCATTTCTTAACAGCTACAGGACTGAGGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGCAGGTATGATTCATTTCTTAACAGCTACAGGACTGAGGCCAT  600

seq1  TAGCTCCTAGAAGGTGCCCTCTAGGGACCTTTTCCATAGGTGACTCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTAGAAGGTGCCCTCTAGGGACCTTTTCCATAGGTGACTCAGGA  650

seq1  TGTAAACATGTTTTCCTGAAAGACAACAGTTTTTTTTTTTTTTTTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACATGTTTTCCTGAAAGACAACAGTTTTTTTTTTTTTTTTTCAAA  700

seq1  TGTCTAGTAGGAACAAGCCTCCCATGAGCATTGCTATCTTCATTTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTAGGAACAAGCCTCCCATGAGCATTGCTATCTTCATTTTCTTG  750

seq1  GAACCAAGTCACAGCTCCCCTTGTCTTGATTCAAGAGACCATGCAAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGTCACAGCTCCCCTTGTCTTGATTCAAGAGACCATGCAAAGGT  800

seq1  GT-GGGAACCTAAAGCTCAGGAGATGATTGGGGATCTCACTAGGATCTGG  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAACCTAAAGCTCAGGAGATGATTGGGGATCTCACTAGGATCTGG  850

seq1  TCACATACTCTAAGTGCAGCAACCTCAGTCAAGTCATAGAGCACTCTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACTCTAAGTGCAGCAACCTCAGTCAAGTCATAGAGCACTCTCCT  900

seq1  ACCTGTATTAGTTCTT-GATTGTATCAGAGAAAGAAGTTTCATTCTTCTA  948
      ||||||| |||||||| ||||||||||||||||||   ||||||||||||
seq2  ACCTGTA-TAGTTCTTGGATTGTATCAGAGAAAGA--GTTCATTCTTCTA  947

seq1  AAGAAAAAAGATATCAGATGCTAGGGAAAGGTGAACATTTTTTTTTTTTT  998
      ||||||||||||||||||||||  || || |||||||  |||||||||||
seq2  AAGAAAAAAGATATCAGATGCTTAGGCAA-GTGAACA--TTTTTTTTTTT  994

seq1  TTGCATCTCCCAGCACTATGACCAAAGATATTGGATGCAGGAAATTTGAT  1048
      |||||||| ||||||||||||||||||  |||||||||||  ||||||||
seq2  TTGCATCT-CCAGCACTATGACCAAAG--ATTGGATGCAG--AATTTGAT  1039

seq1  TCCTATAGGACCA-GCTCAGTCTCAGAACACTTTGAACAAAAGCTAACCC  1097
      || ||||||| || |||||||||||| |||| |||||| |||||| ||||
seq2  TCGTATAGGAACAGGCTCAGTCTCAG-ACAC-TTGAAC-AAAGCT-ACCC  1085

seq1  TGGATTAGTGT-TAGAAA  1114
      |||| ||||||  |||||
seq2  TGGA-TAGTGTCGAGAAA  1102