BAC Information

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BAC

Clone NameB6Ng01-274C12
Chromosome12 (Build37)
Map Location 100,219,217 - 100,378,957
singlet/doubletdoublet
Overlap geneTtc8, EG667779
Upstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845
Downstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274C12.bB6Ng01-274C12.g
ACCGA075535GA075536
length1,1571,045
definitionB6Ng01-274C12.b B6Ng01-274C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,377,794 - 100,378,957)(100,219,217 - 100,220,261)
sequence
gaattcccgtcatctgattggcctataggaatgtatacgggacattttct
tgactaatgattgacgtgggagggctgtagcccactggggatgatgccgt
tccaggcaggtggtcctgagttatgtaagaaagccatggggagcacccag
taaggagtgttactctgtggtctccgcttcagttcctgcttctgggtacc
tgccttagtttgagtttctgccctgactctaacctccccaagttgtatct
gatcaatggttttttcacaatagcagagaagctaaccaggacagagagga
gcataagagagggtactgggaggccagttcatgtatgaaatcatcagcaa
agaagaaaggaaaaatcctcaagactagataaagacaatcagagcctctt
ttcccgtcccgtctcctcacttctccaacatggctccagaggcgggaagg
ttccagatcaaagcgccagcccaactaaatgagaaccatcttgctcgtag
gtggcatctctcgctgggtactctcctgtggagggaacgaaccatcccct
taagggcctgtttcataagggaaggggtctttcccccaaagctttacctg
tgattggatttcaacactcaccttgggggacacaaacatctgatcacagt
gggaagtgcctcaccctgcttcccagatgcccacccctgccaaggcgtta
gtctggctatcttgatggggagacccattaggaagaagacctcaagctca
gtggagagggaaggcagcccaacactccaggagactgggtgttgaatctc
cagcttcctccccttcggctgcaaacacaggactacaaacaagcagaggg
ctgcttgctctctggtcgcttggcagaaccgagagagaaaaatgatggta
actgtgttcagtcggcacatttcgggggtgctggctgtatagacagagtt
gtctaaaacccaggcttgtagaagtggtggggtgtcccctgctgagaact
gcttgcccagcaaagacaaaggcaagctaagctgtctgcctgggcaatct
tctgctgacttagatcctttttgctggacagtgtctccagaacagactgg
tgcgcctcacgcaaggttcctctagaaagaatgctcatcaccatctatgg
ccagcat
gaattctctccaaaaccccagtgatgtttttcacttgagcctctctgaac
taggccctgtggcccgcatagaagatttagcaatgaatgaaatagacaaa
aacttgtacctcgtgatgcttgcattcgtatggaacctgagactcactga
ggttacaaggcatctgtagaagctgagaatggagatacaatctataaaac
cgtagacactagagactaaagcagagacactagttcaaagctagaccagt
aagaaccagtctcaaccaaacccaaacagcaggggtctttaggtgatggc
tcagtggctaagagcacatgcagctcttccaaagatccaggaatttggtt
cccagcatccacttcaggcagctcccagctgcctggaactccagctccag
gaaattctgtatctctgactctgacagcacctgtattcacatacacatat
ccacactcactcacacctacacataatgaaaaataataaaaagaaaacca
gtctgaaagaacaaaacaaagacacacgctagagccacactgcactctga
gctcccacactgctctccggctcccagggcaccttccatctcccactgct
ggcacgcttcaaatcacaaggaaagtcagtgtgctttaatgacttcagct
caaaggattcttataaggtaggtcaacaaactactgtaaaataataaagt
tgaaacgttaggattttaaaaggaaaccatttcaatctaaaatacataaa
tgctaatgaaaaatccatcagagttgaatgaatcacatagtttttttttt
tttgcacacacactaataatttttctgtcctttcagaagtatatacatga
attttttctttgggactggacttcaattacagagtttattaaacattaga
ggtattttttatattttgggttttcaagacagggtttcttctgtgtagtc
ctgggctgtcttggaacttgcttttgtagaccaggctgacctcactcaga
aatctgcctgcctctgcctcccagtgctgggataaagtcatgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100377794_100378957
seq2: B6Ng01-274C12.b_44_1200 (reverse)

seq1  ATGCTGGGGCCATAGATGGTTGTATGAAGCATCTTTCCTAAGGAGGAA-C  49
      |||||  |||||||||||||   ||| |||||  || |||  |||||| |
seq2  ATGCT--GGCCATAGATGGT--GATG-AGCATTCTTTCTA--GAGGAACC  43

seq1  TTGCGTGAGGCCGCACAAGTCTG-TCTTGAGACACTGTCCAGCAAAAAGG  98
      |||||||||| ||||| |||||| ||| ||||||||||||||||||||||
seq2  TTGCGTGAGG-CGCACCAGTCTGTTCTGGAGACACTGTCCAGCAAAAAGG  92

seq1  ATCTAAAGTCAGCAGAAGAATTGCCCAGGCAGACAGCTTAGCTTGCCTTT  148
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCT-AAGTCAGCAGAAG-ATTGCCCAGGCAGACAGCTTAGCTTGCCTTT  140

seq1  GTCTTTGCTGGGCAAGCAGTTCTCAGCAGGGGACA-CCCACCACTTCTAC  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCTTTGCTGGGCAAGCAGTTCTCAGCAGGGGACACCCCACCACTTCTAC  190

seq1  AAGCCTGGGTTTTAGACAACTCTGTCTATACAGCCAGCACCCCCGAAATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGTTTTAGACAACTCTGTCTATACAGCCAGCACCCCCGAAATG  240

seq1  TGCCGACTGAACACAGTTACCATCATTTTTCTCTCTCGGTTCTGCCAAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGACTGAACACAGTTACCATCATTTTTCTCTCTCGGTTCTGCCAAGC  290

seq1  GACCAGAGAGCAAGCAGCCCTCTGCTTGTTTGTAGTCCTGTGTTTGCAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGAGCAAGCAGCCCTCTGCTTGTTTGTAGTCCTGTGTTTGCAGC  340

seq1  CGAAGGGGAGGAAGCTGGAGATTCAACACCCAGTCTCCTGGAGTGTTGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGGGAGGAAGCTGGAGATTCAACACCCAGTCTCCTGGAGTGTTGGG  390

seq1  CTGCCTTCCCTCTCCACTGAGCTTGAGGTCTTCTTCCTAATGGGTCTCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCCCTCTCCACTGAGCTTGAGGTCTTCTTCCTAATGGGTCTCCC  440

seq1  CATCAAGATAGCCAGACTAACGCCTTGGCAGGGGTGGGCATCTGGGAAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGATAGCCAGACTAACGCCTTGGCAGGGGTGGGCATCTGGGAAGC  490

seq1  AGGGTGAGGCACTTCCCACTGTGATCAGATGTTTGTGTCCCCCAAGGTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGGCACTTCCCACTGTGATCAGATGTTTGTGTCCCCCAAGGTGA  540

seq1  GTGTTGAAATCCAATCACAGGTAAAGCTTTGGGGGAAAGACCCCTTCCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAAATCCAATCACAGGTAAAGCTTTGGGGGAAAGACCCCTTCCCT  590

seq1  TATGAAACAGGCCCTTAAGGGGATGGTTCGTTCCCTCCACAGGAGAGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACAGGCCCTTAAGGGGATGGTTCGTTCCCTCCACAGGAGAGTAC  640

seq1  CCAGCGAGAGATGCCACCTACGAGCAAGATGGTTCTCATTTAGTTGGGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAGAGATGCCACCTACGAGCAAGATGGTTCTCATTTAGTTGGGCT  690

seq1  GGCGCTTTGATCTGGAACCTTCCCGCCTCTGGAGCCATGTTGGAGAAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTTTGATCTGGAACCTTCCCGCCTCTGGAGCCATGTTGGAGAAGTG  740

seq1  AGGAGACGGGACGGGAAAAGAGGCTCTGATTGTCTTTATCTAGTCTTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACGGGACGGGAAAAGAGGCTCTGATTGTCTTTATCTAGTCTTGAG  790

seq1  GATTTTTCCTTTCTTCTTTGCTGATGATTTCATACATGAACTGGCCTCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCCTTTCTTCTTTGCTGATGATTTCATACATGAACTGGCCTCCC  840

seq1  AGTACCCTCTCTTATGCTCCTCTCTGTCCTGGTTAGCTTCTCTGCTATTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCTCTCTTATGCTCCTCTCTGTCCTGGTTAGCTTCTCTGCTATTG  890

seq1  TGAAAAAACCATTGATCAGATACAACTTGGGGAGGTTAGAGTCAGGGCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAACCATTGATCAGATACAACTTGGGGAGGTTAGAGTCAGGGCAG  940

seq1  AAACTCAAACTAAGGCAGGTACCCAGAAGCAGGAACTGAAGCGGAGACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAACTAAGGCAGGTACCCAGAAGCAGGAACTGAAGCGGAGACCA  990

seq1  CAGAGTAACACTCCTTACTGGGTGCTCCCCATGGCTTTCTTACATAACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAACACTCCTTACTGGGTGCTCCCCATGGCTTTCTTACATAACTC  1040

seq1  AGGACCACCTGCCTGGAACGGCATCATCCCCAGTGGGCTACAGCCCTCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACCTGCCTGGAACGGCATCATCCCCAGTGGGCTACAGCCCTCCC  1090

seq1  ACGTCAATCATTAGTCAAGAAAATGTCCCGTATACATTCCTATAGGCCAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAATCATTAGTCAAGAAAATGTCCCGTATACATTCCTATAGGCCAA  1140

seq1  TCAGATGACGGGAATTC  1164
      |||||||||||||||||
seq2  TCAGATGACGGGAATTC  1157

seq1: chr12_100219217_100220261
seq2: B6Ng01-274C12.g_66_1110

seq1  GAATTCTCTCCAAAACCCCAGTGATGTTTTTCACTTGAGCCTCTCTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAAAACCCCAGTGATGTTTTTCACTTGAGCCTCTCTGAAC  50

seq1  TAGGCCCTGTGGCCCGCATAGAAGATTTAGCAATGAATGAAATAGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTGTGGCCCGCATAGAAGATTTAGCAATGAATGAAATAGACAAA  100

seq1  AACTTGTACCTCGTGATGCTTGCATTCGTATGGAACCTGAGACTCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTACCTCGTGATGCTTGCATTCGTATGGAACCTGAGACTCACTGA  150

seq1  GGTTACAAGGCATCTGTAGAAGCTGAGAATGGAGATACAATCTATAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAAGGCATCTGTAGAAGCTGAGAATGGAGATACAATCTATAAAAC  200

seq1  CGTAGACACTAGAGACTAAAGCAGAGACACTAGTTCAAAGCTAGACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGACACTAGAGACTAAAGCAGAGACACTAGTTCAAAGCTAGACCAGT  250

seq1  AAGAACCAGTCTCAACCAAACCCAAACAGCAGGGGTCTTTAGGTGATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGTCTCAACCAAACCCAAACAGCAGGGGTCTTTAGGTGATGGC  300

seq1  TCAGTGGCTAAGAGCACATGCAGCTCTTCCAAAGATCCAGGAATTTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCTAAGAGCACATGCAGCTCTTCCAAAGATCCAGGAATTTGGTT  350

seq1  CCCAGCATCCACTTCAGGCAGCTCCCAGCTGCCTGGAACTCCAGCTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCCACTTCAGGCAGCTCCCAGCTGCCTGGAACTCCAGCTCCAG  400

seq1  GAAATTCTGTATCTCTGACTCTGACAGCACCTGTATTCACATACACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTGTATCTCTGACTCTGACAGCACCTGTATTCACATACACATAT  450

seq1  CCACACTCACTCACACCTACACATAATGAAAAATAATAAAAAGAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCACTCACACCTACACATAATGAAAAATAATAAAAAGAAAACCA  500

seq1  GTCTGAAAGAACAAAACAAAGACACACGCTAGAGCCACACTGCACTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAAGAACAAAACAAAGACACACGCTAGAGCCACACTGCACTCTGA  550

seq1  GCTCCCACACTGCTCTCCGGCTCCCAGGGCACCTTCCATCTCCCACTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACACTGCTCTCCGGCTCCCAGGGCACCTTCCATCTCCCACTGCT  600

seq1  GGCACGCTTCAAATCACAAGGAAAGTCAGTGTGCTTTAATGACTTCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCTTCAAATCACAAGGAAAGTCAGTGTGCTTTAATGACTTCAGCT  650

seq1  CAAAGGATTCTTATAAGGTAGGTCAACAAACTACTGTAAAATAATAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTCTTATAAGGTAGGTCAACAAACTACTGTAAAATAATAAAGT  700

seq1  TGAAACGTTAGGATTTTAAAAGGAAACCATTTCAATCTAAAATACATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGTTAGGATTTTAAAAGGAAACCATTTCAATCTAAAATACATAAA  750

seq1  TGCTAATGAAAAATCCATCAGAGTTGAATGAATCACATAG--TTTTTTTT  798
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TGCTAATGAAAAATCCATCAGAGTTGAATGAATCACATAGTTTTTTTTTT  800

seq1  TTTGCACACACACTAATAA-TTTTCTGTCCTTTCAGAAGTATATACATGA  847
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGCACACACACTAATAATTTTTCTGTCCTTTCAGAAGTATATACATGA  850

seq1  A-TTTTTCTTTGGGACTGGACTTCAATTACAGAGTTTATTAAACATTAGA  896
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTTTGGGACTGGACTTCAATTACAGAGTTTATTAAACATTAGA  900

seq1  GGTATTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTC-TCTGTGTA  945
      ||||   |||||| | |||||| |||||||||||||||||| ||||||||
seq2  GGTA---TTTTTTATATTTTGGGTTTTCAAGACAGGGTTTCTTCTGTGTA  947

seq1  GTCCT-GGCTGTCTTGGAACTTGC-TTTGTAGACCAGGCTGACCTCCAAC  993
      ||||| |||||||||||||||||| |||||||||||||||||||||  ||
seq2  GTCCTGGGCTGTCTTGGAACTTGCTTTTGTAGACCAGGCTGACCTC--AC  995

seq1  TCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGTCATGT  1043
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TCAGAAATCTGCCTGCCTCTGCCTCCC-AGTGCTGGGA-TAAAGTCATGT  1043

seq1  GC  1045
      ||
seq2  GC  1045