BAC Information

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BAC

Clone NameB6Ng01-274E05
Chromosome12 (Build37)
Map Location 61,906,547 - 61,907,734
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274E05.bB6Ng01-274E05.g
ACCGA075613GA075614
length1,1471,182
definitionB6Ng01-274E05.b B6Ng01-274E05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaacagaggaaccttgaatggtggagaagcacctaaagaaaat
gttcaaagtctttagtgatcagagaaatgcaaatcaaaatgaccctgaga
ttccaccttacagcaatgagaatggctaagatcaaaaactcaggtgacaa
cacatgctgcagaggatgtggagaaagaggaacactcctccattgctggt
aggattgcaaattggtacagctattctggaaatcaatctggaggttcctt
agaaaattggaaatcgttctacctgaagcagtaccactcttcggaatata
cccaaaagatgccccaacatgccacaggggcacatgttccactatgttca
tagtggccttgtttgtgatatgcagaagctggaaacaacctagatgtccc
atgacagaagaatggatacagaaaatttggttcatatacacaatgaaata
ctactcagcctttaagaatgaggacatcctgtgttttgcaggcagatgga
tggaactaggaaatatcatcctgagtgaggtaactcagacccaaaagggc
attcatggtacgtactcactagcaagttgatattagccaaaaagggggaa
aaaagaaagaaaacaaaaaaaaagaaaggaaggaaggaaggaaggaagga
aggaaggaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaaaaagtacagaatacccaagatacagtacaca
gaactcaaaggtcaataagctgaagggtccaagtttggactcctcagtcc
cacttgtttggaggatgaaagcaatcacacacaagtggggaaggaaggag
tgacctggagggaaagtggactggactgggtttgtggaggaaaggggaat
ctgatctggaattgggtgaatgaaaggtctgaagtcttgaggggcagcag
aaaaaatggaaacagacagcctaggaggtaggaagttgggaggacctcta
gaatgcaccaaactttgggaggtgagagtctctcaggactcaaagggagg
gacttagatgaaatgcctgaagtagggagaggtaacttgtaagcctactc
cgacagtaagaacaggccatcagttaaggggaggggggggggtttgc

gaattcttgctggcgagatactagctcgggatacataatgaaaactctaa
ttatgagcaacagtccatgtttatcttctaagtccaaataagattaatat
ttaatacagaaaatcaaaaatataatgctttctaggaacacacagagttt
gttgtagaattctttccttttagaaatgtacaggtatataaatttactgt
ttttgctttggtaccttaagtgtaatttatttacatgtaagtttacatgc
atgtggagtcctcacagaggccagaaatggacacccaatcttttggagat
agtagtacagatgattgtgagcaggaaaacgaaacctacgttttcagaaa
gagcaataagttagttggctctttactgctaaaccatctctcaagttcat
aatatctgcttgtactggacagttgtccttgacaaaaagtacttgcttcg
aaaagatgcttctgaatagtctatgtgagtgcttgaatttaaaggattgc
ataaattattactcagttgttcaaagaaatatctcttttctgtgatccaa
atataataattatggcactgatgattatctttgaaaatggaaagtcaaca
ctaagtatgatgactcagaagcctgactagaccggcctacagtcctctca
ttgctattgttcttgggaacatgttatatactatatctcttcctcctcct
tccttaacttccatctttctatttctcttcctattttctttaaacaaaga
tactaagaattacagattaaatgatggtttatatctacatatttagtatg
taaagaaaactctaaagtcaaacctactttatccaaaagaaattgtttat
ctacactatgcagctatcctgtctataataattttcatatggctttttag
ttatttttaattgctttagatttggaaatatcatatgctttaaatcacat
ttggatttttatttaaatacaatccaacaatagctaatgtttaatattta
aaaataataaaatcgtacatattttcatatttactattaacatataaccc
tttttatatcacaatgtaacatacattatacatgaaacataatgcatttg
atccaattctatatcttgtaatttcctactgtcacaaatgactgaattga
agtctgcagtcaaaattgaatgtatatatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61906547_61907734
seq2: B6Ng01-274E05.g_64_1245 (reverse)

seq1  TGCATATATACATTCATATTTGTAATTTGCAGA-TTCAATTTCAGTCAAT  49
      ||||||||||||||||  ||||     |||||| ||||| ||||||||  
seq2  TGCATATATACATTCAATTTTG---ACTGCAGACTTCAA-TTCAGTCA--  44

seq1  TTTTGTTGACATTAGAAATATAC-AGATATAGAATTGAATCAAAATGCAC  98
       |||| ||||| ||| ||  ||| ||||||||||||| ||| ||||||| 
seq2  -TTTG-TGACAGTAGGAAATTACAAGATATAGAATTGGATC-AAATGCAT  91

seq1  TATGTTTCATGGTATTAATGGTATGTTACA-TGTGATATAAAAAGGGTTA  147
      |||||||||| ||| |||| |||||||||| |||||||||||||||||||
seq2  TATGTTTCAT-GTA-TAAT-GTATGTTACATTGTGATATAAAAAGGGTTA  138

seq1  TATG-TAATAGTAAATATGAAAATATGTACGATTTTA-TATTTTTAAATA  195
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATGTTAATAGTAAATATGAAAATATGTACGATTTTATTATTTTTAAATA  188

seq1  TTAAACATTAGCTATTGTTGGATTGTATTTAAATAAAAATCCAAATGTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTAGCTATTGTTGGATTGTATTTAAATAAAAATCCAAATGTGA  238

seq1  TTTAAAGCATATGATATTTCCAAATCTAAAGCAATT-AAAATAACTAAAA  294
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTAAAGCATATGATATTTCCAAATCTAAAGCAATTAAAAATAACTAAAA  288

seq1  AGCCATATGAAAATTATTATAGACAGGATAGCTGCATAGTGTAGATAAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATGAAAATTATTATAGACAGGATAGCTGCATAGTGTAGATAAAC  338

seq1  AATTTCTTTTGGATAAAGTAGGTTTGACTTTAGAGTTTTCTTTACATACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTTGGATAAAGTAGGTTTGACTTTAGAGTTTTCTTTACATACT  388

seq1  AAATATGTAGATATAAACCATCATTTAATCTGTAATTCTTAGTATCTTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAGATATAAACCATCATTTAATCTGTAATTCTTAGTATCTTTG  438

seq1  TTTAAAGAAAATAGGAAGAGAAATAGAAAGATGGAAGTTAAGGAAGGAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAAATAGGAAGAGAAATAGAAAGATGGAAGTTAAGGAAGGAGG  488

seq1  AGGAAGAGATATAGTATATAACATGTTCCCAAGAACAATAGCAATGAGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGATATAGTATATAACATGTTCCCAAGAACAATAGCAATGAGAG  538

seq1  GACTGTAGGCCGGTCTAGTCAGGCTTCTGAGTCATCATACTTAGTGTTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAGGCCGGTCTAGTCAGGCTTCTGAGTCATCATACTTAGTGTTGA  588

seq1  CTTTCCATTTTCAAAGATAATCATCAGTGCCATAATTATTATATTTGGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTTTCAAAGATAATCATCAGTGCCATAATTATTATATTTGGAT  638

seq1  CACAGAAAAGAGATATTTCTTTGAACAACTGAGTAATAATTTATGCAATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAAGAGATATTTCTTTGAACAACTGAGTAATAATTTATGCAATC  688

seq1  CTTTAAATTCAAGCACTCACATAGACTATTCAGAAGCATCTTTTCGAAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTCAAGCACTCACATAGACTATTCAGAAGCATCTTTTCGAAGC  738

seq1  AAGTACTTTTTGTCAAGGACAACTGTCCAGTACAAGCAGATATTATGAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTTTTGTCAAGGACAACTGTCCAGTACAAGCAGATATTATGAAC  788

seq1  TTGAGAGATGGTTTAGCAGTAAAGAGCCAACTAACTTATTGCTCTTTCTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATGGTTTAGCAGTAAAGAGCCAACTAACTTATTGCTCTTTCTG  838

seq1  AAAACGTAGGTTTCGTTTTCCTGCTCACAATCATCTGTACTACTATCTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTAGGTTTCGTTTTCCTGCTCACAATCATCTGTACTACTATCTCC  888

seq1  AAAAGATTGGGTGTCCATTTCTGGCCTCTGTGAGGACTCCACATGCATGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTGGGTGTCCATTTCTGGCCTCTGTGAGGACTCCACATGCATGT  938

seq1  AAACTTACATGTAAATAAATTACACTTAAGGTACCAAAGCAAAAACAGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACATGTAAATAAATTACACTTAAGGTACCAAAGCAAAAACAGTA  988

seq1  AATTTATATACCTGTACATTTCTAAAAGGAAAGAATTCTACAACAAACTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATACCTGTACATTTCTAAAAGGAAAGAATTCTACAACAAACTC  1038

seq1  TGTGTGTTCCTAGAAAGCATTATATTTTTGATTTTCTGTATTAAATATTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCCTAGAAAGCATTATATTTTTGATTTTCTGTATTAAATATTA  1088

seq1  ATCTTATTTGGACTTAGAAGATAAACATGGACTGTTGCTCATAATTAGAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTTGGACTTAGAAGATAAACATGGACTGTTGCTCATAATTAGAG  1138

seq1  TTTTCATTATGTATCCCGAGCTAGTATCTCGCCAGCAAGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTATGTATCCCGAGCTAGTATCTCGCCAGCAAGAATTC  1182


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