BAC Information

Click to search

BAC

Clone NameB6Ng01-274H12
Chromosome12 (Build37)
Map Location 68,848,678 - 68,944,564
singlet/doubletdoublet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274H12.bB6Ng01-274H12.g
ACCGA075763GA075764
length1,1071,121
definitionB6Ng01-274H12.b B6Ng01-274H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,848,678 - 68,849,789)(68,943,284 - 68,944,564)
sequence
gaattcttagctctaagatcaagaattggagtactgtttaccccagtgct
gacgattcgaggctctttctcattttcttttttattagattcagtgtatc
tggttttacattgaagtccttgattcactttgactcatgctttgtgcaaa
gtgacaaatatgaatctattttcattttttctacatatctgctaccagtt
agaccagcaccatttattgaagataaattgtttatcttcaaaaaatccct
tttctattttttttggcttctttgtcaaagatcaagtgtctatatttcct
tagattagaaatattcatatctcagaaataagtaaaatttgtgctaattg
ccttttaaacaatctcattgcttcacatctttagtttactaccaaagccc
aaaataaccaactaaaagggaatttgacttgataagatctgcaacatttc
attagatttatttcatataacttataaatgctgattagctactgtggtgt
gcagtactctgattttgttttaataacatattcaaatttaattgtcccaa
atctaaatgcataaacccagtggaacaaagactcatgaaattttaatttc
tggtaaatagaaattctcactacttgtaaactctacttatgttctagtct
ctagaatttttgtaggtaactttgtactggcttttgtaatttacaaatta
tcatatggtgagagcatgctgtcagtaaaataatctaattgtgtagaaag
tgtttcttaatttttcttcattcttccagttaacttagtagaaaaacaca
tattttcagaataactgatatttgtttatgaaaaacatcagcttagaatt
atgacaataataattttatttttatttaccattgctttaaaagtgcaaga
tctgggaaaattataattgatagagcatagatgaagcaaggaaagaagag
atagactctatgtttatctcaaacctatagaagttgtggagaaatgtaat
gactaagtatatgagatcactttaatttttaagtgaaataatatttttaa
tactaaaattcttattggtaacaattgaaatgaacatagatgtacttttt
ctttttt

gaattcacgccaagtcactgcccatctcggggcgtagtaatgaggtgatg
ggcgagcaacaaatcaggtgctgacacgctacgctgagggctatataagc
agcaccattttctgggttctgggtcttccctcctgaagaagcaataaagc
ttttgctgcagaagaatctggttgtctgagtgtgttcttaccggtggaaa
caatagctcgggacaagaatggaagaaagaaggtgatcaaaatacattgt
atggattcataaagaactaaataatattatttaaaaaaatgaattgatgt
ttaaacatggccataaaaacaaacaagaaagacagaaaaaaatacatttt
cacatatacattgaagaagagtattcattatatatatatcttaatacctg
aaaataaattctatttattccacattaattttgctacagtagcactgtac
cttacctgttctactgtggctgtagatctggtaggccagatctacgatat
accacttactttcggcctgccatcctcacctacttcagtaatccttatac
atgctatccagttaggccataaattcaggtttgtgattttctacattcta
aagcactaaatggtaattccccgtttcccagtcattgttggacgagggaa
cagtttttctgggaaatgtttaaatttttcccttgacatatcaaaatttg
tgatatttatgggagtacatactttgtaaaatttatagttgaaaggttat
gaatacataataagatagcattaataattctaaagaccttaagcatactt
aactaactatgcatgcattaaaaatgccatgagactcatattttctggta
aactagaaaaacatggtctctctctctctctctctctctctctctctctc
tgtgtgtgtgtgtgtgtgtgtgtatgctatagaccagggatgtcctagaa
ctcatatatcctacctctctctgcttccccagtgctggtattaaagatgt
atgccactattatattgtagaatcctttaaataaaatgttactgttgatg
taatgtctttaaactttattaacataaagaatatttattgcctttttatt
ctatcattgttattcaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68848678_68849789
seq2: B6Ng01-274H12.b_39_1145

seq1  GAATTCTTAGCTCTAAGATCAAGAATTGGAGTACTGTTTACCCCAGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTCTAAGATCAAGAATTGGAGTACTGTTTACCCCAGTGCT  50

seq1  GACGATTCGAGGCTCTTTCTCATTTTCTTTTTTATTAGATTCAGTGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATTCGAGGCTCTTTCTCATTTTCTTTTTTATTAGATTCAGTGTATC  100

seq1  TGGTTTTACATTGAAGTCCTTGATTCACTTTGACTCATGCTTTGTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTACATTGAAGTCCTTGATTCACTTTGACTCATGCTTTGTGCAAA  150

seq1  GTGACAAATATGAATCTATTTTCATTTTTTCTACATATCTGCTACCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATATGAATCTATTTTCATTTTTTCTACATATCTGCTACCAGTT  200

seq1  AGACCAGCACCATTTATTGAAGATAAATTGTTTATCTTCAAAAAATCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCACCATTTATTGAAGATAAATTGTTTATCTTCAAAAAATCCCT  250

seq1  TTTCTATTTTTTTTGGCTTCTTTGTCAAAGATCAAGTGTCTATATTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTTTTTTGGCTTCTTTGTCAAAGATCAAGTGTCTATATTTCCT  300

seq1  TAGATTAGAAATATTCATATCTCAGAAATAAGTAAAATTTGTGCTAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGAAATATTCATATCTCAGAAATAAGTAAAATTTGTGCTAATTG  350

seq1  CCTTTTAAACAATCTCATTGCTTCACATCTTTAGTTTACTACCAAAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAACAATCTCATTGCTTCACATCTTTAGTTTACTACCAAAGCCC  400

seq1  AAAATAACCAACTAAAAGGGAATTTGACTTGATAAGATCTGCAACATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCAACTAAAAGGGAATTTGACTTGATAAGATCTGCAACATTTC  450

seq1  ATTAGATTTATTTCATATAACTTATAAATGCTGATTAGCTACTGTGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTATTTCATATAACTTATAAATGCTGATTAGCTACTGTGGTGT  500

seq1  GCAGTACTCTGATTTTGTTTTAATAACATATTCAAATTTAATTGTCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACTCTGATTTTGTTTTAATAACATATTCAAATTTAATTGTCCCAA  550

seq1  ATCTAAATGCATAAACCCAGTGGAACAAAGACTCATGAAATTTTAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATGCATAAACCCAGTGGAACAAAGACTCATGAAATTTTAATTTC  600

seq1  TGGTAAATAGAAATTCTCACTACTTGTAAACTCTACTTATGTTCTAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAGAAATTCTCACTACTTGTAAACTCTACTTATGTTCTAGTCT  650

seq1  CTAGAATTTTTGTAGGTAACTTTGTACTGGCTTTTGTAATTTACAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTTTGTAGGTAACTTTGTACTGGCTTTTGTAATTTACAAATTA  700

seq1  TCATATGGTGAGAGCATGCTGTCAGTAAAATAATCTAATTGTGTAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGTGAGAGCATGCTGTCAGTAAAATAATCTAATTGTGTAGAAAG  750

seq1  TGTTTCTTAATTTTTCTTCATTCTTCCAGTTAACTTAGTAGAAAAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTAATTTTTCTTCATTCTTCCAGTTAACTTAGTAGAAAAACACA  800

seq1  TATTTTCAGAATAACTGATATTTGTTTATGAAAAACATCAGCTTAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGAATAACTGATATTTGTTTATGAAAAACATCAGCTTAGAATT  850

seq1  ATGACAATAATAATTTTATTTTTATTTACCATTGCTTTAAAAGTGCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATAATAATTTTATTTTTATTTACCATTGCTTTAAAAGTGCAAGA  900

seq1  TCTGGGAAAATTATAATTGATAGAGCATAGATGAAGCAAGGAAAGAAGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGGGAAAATTATAATTGATAGAGCATAGATGAAGCAAGGAAAGAAG-A  949

seq1  GATAGACTCTATGTTTATCTCAAACCTATAGAAGTTGTGGAGAAATGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACTCTATGTTTATCTCAAACCTATAGAAGTTGTGGAGAAATGTAA  999

seq1  TGACTAAGTATATGAGATCACTTTAATTTTTAAGTGAAATAATATTTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGACTAAGTATATGAGATCACTTTAATTTTTAAGTGAAATAATATTTTT-  1048

seq1  AATACTAAAAATTCTTATT-GTAACAATTGAAATTGAACATAGAATGTTA  1099
      |||||| |||||||||||| ||||||||||||| ||||||||| ||| ||
seq2  AATACT-AAAATTCTTATTGGTAACAATTGAAA-TGAACATAG-ATG-TA  1094

seq1  CTTTTTTTTTTTT  1112
      |||||| ||||||
seq2  CTTTTTCTTTTTT  1107


seq1: chr12_68943284_68944564
seq2: B6Ng01-274H12.g_63_1183 (reverse)

seq1  AATATTGAATAGTCATAGTGAAGTGCTTCATTATTAGTTTGTGATTTAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAATTTCATGATTTAAGTTATATTTGTTTCAATACAGTATAATTATGCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AATGTAATATATATGTAATTTAGTATTATTTGAATGTGGTCAAATGTCAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAAACATTTGAATAT--GATAACATTGATTAAGATAAAAAGGCAAATA  198
                  |||||   |||||| ||| ||  ||||||||||||  |
seq2  ------------AATATTGAATAACAATGA-TAGAATAAAAAGGCAATAA  37

seq1  ATATTCTTTATGTTAATAAAGGTTTAAAGACATTACATACAACAGTAACA  248
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  ATATTCTTTATGTTAATAAA-GTTTAAAGACATTACAT-CAACAGTAACA  85

seq1  TTTTATTT-AAGGATTCTACAATAT-ATAGTGGCATACATCTTTAATACC  296
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTATTTAAAGGATTCTACAATATAATAGTGGCATACATCTTTAATACC  135

seq1  AGCACTGGGGAAGCAGAGAGAGGTAGGATATATGAGTTCTAGGACAT-CC  345
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCACTGGGGAAGCAGAGAGAGGTAGGATATATGAGTTCTAGGACATCCC  185

seq1  TGGTCTATAGCATACACACACACACACACACACACAGAGAGAGAGAGAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTATAGCATACACACACACACACACACACACAGAGAGAGAGAGAGA  235

seq1  GAGAGAGAGAGAGAGAGAGACCATGTTTTTCTAGTTTACCAGAAAATATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGACCATGTTTTTCTAGTTTACCAGAAAATATG  285

seq1  AGTCTCATGGCATTTTTAATGCATGCATAGTTAGTTAAGTATGCTTAAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATGGCATTTTTAATGCATGCATAGTTAGTTAAGTATGCTTAAGG  335

seq1  TCTTTAGAATTATTAATGCTATCTTATTATGTATTCATAACCTTTCAACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAATTATTAATGCTATCTTATTATGTATTCATAACCTTTCAACT  385

seq1  ATAAATTTTACAAAGTATGTACTCCCATAAATATCACAAATTTTGATATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTACAAAGTATGTACTCCCATAAATATCACAAATTTTGATATG  435

seq1  TCAAGGGAAAAATTTAAACATTTCCCAGAAAAACTGTTCCCTCGTCCAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAAAAATTTAAACATTTCCCAGAAAAACTGTTCCCTCGTCCAAC  485

seq1  AATGACTGGGAAACGGGGAATTACCATTTAGTGCTTTAGAATGTAGAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGGGAAACGGGGAATTACCATTTAGTGCTTTAGAATGTAGAAAA  535

seq1  TCACAAACCTGAATTTATGGCCTAACTGGATAGCATGTATAAGGATTACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACCTGAATTTATGGCCTAACTGGATAGCATGTATAAGGATTACT  585

seq1  GAAGTAGGTGAGGATGGCAGGCCGAAAGTAAGTGGTATATCGTAGATCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGTGAGGATGGCAGGCCGAAAGTAAGTGGTATATCGTAGATCTG  635

seq1  GCCTACCAGATCTACAGCCACAGTAGAACAGGTAAGGTACAGTGCTACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCAGATCTACAGCCACAGTAGAACAGGTAAGGTACAGTGCTACTG  685

seq1  TAGCAAAATTAATGTGGAATAAATAGAATTTATTTTCAGGTATTAAGATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAATTAATGTGGAATAAATAGAATTTATTTTCAGGTATTAAGATA  735

seq1  TATATATAATGAATACTCTTCTTCAATGTATATGTGAAAATGTATTTTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAATGAATACTCTTCTTCAATGTATATGTGAAAATGTATTTTTT  785

seq1  TCTGTCTTTCTTGTTTGTTTTTATGGCCATGTTTAAACATCAATTCATTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTCTTGTTTGTTTTTATGGCCATGTTTAAACATCAATTCATTT  835

seq1  TTTTAAATAATATTATTTAGTTCTTTATGAATCCATACAATGTATTTTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAATATTATTTAGTTCTTTATGAATCCATACAATGTATTTTGA  885

seq1  TCACCTTCTTTCTTCCATTCTTGTCCCGAGCTATTGTTTCCACCGGTAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCTTTCTTCCATTCTTGTCCCGAGCTATTGTTTCCACCGGTAAG  935

seq1  AACACACTCAGACAACCAGATTCTTCTGCAGCAAAAGCTTTATTGCTTCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTCAGACAACCAGATTCTTCTGCAGCAAAAGCTTTATTGCTTCT  985

seq1  TCAGGAGGGAAGACCCAGAACCCAGAAAATGGTGCTGCTTATATAGCCCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGGAAGACCCAGAACCCAGAAAATGGTGCTGCTTATATAGCCCT  1035

seq1  CAGCGTAGCGTGTCAGCACCTGATTTGTTGCTCGCCCATCACCTCATTAC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTAGCGTGTCAGCACCTGATTTGTTGCTCGCCCATCACCTCATTAC  1085

seq1  TACGCCCCGAGATGGGCAGTGACTTGGCGTGAATTC  1281
      ||||||||||||||||||||||||||||||||||||
seq2  TACGCCCCGAGATGGGCAGTGACTTGGCGTGAATTC  1121


| Home | SequenceCutter | Blast | Download |