BAC Information

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BAC

Clone NameB6Ng01-275A02
Chromosome12 (Build37)
Map Location 89,325,963 - 89,493,103
singlet/doubletdoublet
Overlap geneLOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862
Upstream geneZdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226
Downstream geneEG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275A02.bB6Ng01-275A02.g
ACCGA076157GA076158
length586528
definitionB6Ng01-275A02.b B6Ng01-275A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,492,518 - 89,493,103)(89,325,963 - 89,326,494)
sequence
gaattcaagtcttcttgcctgtgcagtgaatactgcacggagtgagcaac
ctcctcctcagccgtgtcagctcactgcaacttccttacaactttgagtt
tctagggtttaaaactgagacagagagaagttaggtcttctgaaagtttg
gtttgttctttctatgttttgtaagttgctggggaggaggggctgaaact
caggtgacttgctaagttctagaggcagatgaactagggcactcatgaaa
atctagcacaagggtgccaaacccacatcccacataattaaaggaaagca
ttgcttgcagtaagtcatttaaaaataatattttgggcggtctaagagac
cggttaagagcaataattcccaccaccgacatgatagcagacaagcatgt
gctactccagtaccgagggggtcgagtgccctcttttagcctcttggtca
ccaagcatgcatgtggttacaaatggacatacacacaaaacgcctttata
tatatatatatatatatatatatatatatatatatataaaattataaaat
aggatttgttacttatagtgtatgagtgtgtgggtg
atcagtgtatttttatatatctgtacactgtgaatgagtctttaagggct
ggagagatggctcagtggttaagatcattaactgttcttccagaggtcct
gagttcaattctcagcaactggaggatggttcacaaccatctgtaatggg
atctgatgcactcgtcttgtgtgtgtctgaagatagctgtggtgtactca
tagaaatataaataaataactcttaaaaaaattttttttagacagggttt
ctgtttgtagccctgagtgtcctggaactaactctgtagagcaggctggc
ctcgaactcagaaatctgcctgcctatgcctcccgagtgctgggattaaa
ggcttgcaccatcacacctgttttttttttttttaagatttatttattta
gtatatgtaagtacactgtagttatcctaagatactccagaagagggcat
cagatttcgttatggatggttgtgagctactatgtgctgtttgtaagccc
tgggtgtcctggaactaacctctgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89492518_89493103
seq2: B6Ng01-275A02.b_45_630 (reverse)

seq1  CACCCACACACTCATACACTATAAGTAACAAATCCTATTTTATAATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACACTCATACACTATAAGTAACAAATCCTATTTTATAATTTTA  50

seq1  TATATATATATATATATATATATATATATATATATATATAAAGGCGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATAAAGGCGTTTT  100

seq1  GTGTGTATGTCCATTTGTAACCACATGCATGCTTGGTGACCAAGAGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTCCATTTGTAACCACATGCATGCTTGGTGACCAAGAGGCTA  150

seq1  AAAGAGGGCACTCGACCCCCTCGGTACTGGAGTAGCACATGCTTGTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGCACTCGACCCCCTCGGTACTGGAGTAGCACATGCTTGTCTGC  200

seq1  TATCATGTCGGTGGTGGGAATTATTGCTCTTAACCGGTCTCTTAGACCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGTCGGTGGTGGGAATTATTGCTCTTAACCGGTCTCTTAGACCGC  250

seq1  CCAAAATATTATTTTTAAATGACTTACTGCAAGCAATGCTTTCCTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATATTATTTTTAAATGACTTACTGCAAGCAATGCTTTCCTTTAAT  300

seq1  TATGTGGGATGTGGGTTTGGCACCCTTGTGCTAGATTTTCATGAGTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGATGTGGGTTTGGCACCCTTGTGCTAGATTTTCATGAGTGCCC  350

seq1  TAGTTCATCTGCCTCTAGAACTTAGCAAGTCACCTGAGTTTCAGCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATCTGCCTCTAGAACTTAGCAAGTCACCTGAGTTTCAGCCCCTC  400

seq1  CTCCCCAGCAACTTACAAAACATAGAAAGAACAAACCAAACTTTCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCAACTTACAAAACATAGAAAGAACAAACCAAACTTTCAGAAG  450

seq1  ACCTAACTTCTCTCTGTCTCAGTTTTAAACCCTAGAAACTCAAAGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACTTCTCTCTGTCTCAGTTTTAAACCCTAGAAACTCAAAGTTGTA  500

seq1  AGGAAGTTGCAGTGAGCTGACACGGCTGAGGAGGAGGTTGCTCACTCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTGCAGTGAGCTGACACGGCTGAGGAGGAGGTTGCTCACTCCGT  550

seq1  GCAGTATTCACTGCACAGGCAAGAAGACTTGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTCACTGCACAGGCAAGAAGACTTGAATTC  586

seq1: chr12_89325963_89326494
seq2: B6Ng01-275A02.g_72_605

seq1  GAATTCATCAGTGTATTTTTATATATCTGTACACTGTGAATGAGTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTGTATTTTTATATATCTGTACACTGTGAATGAGTCTTTA  50

seq1  AGGGCTGGAGAGATGGCTCAGTGGTTAAGATCATTAACTGTTCTTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAGAGATGGCTCAGTGGTTAAGATCATTAACTGTTCTTCCAGA  100

seq1  GGTCCTGAGTTCAATTCTCAGCAACTGGAGGATGGTTCACAACCATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCTCAGCAACTGGAGGATGGTTCACAACCATCTGT  150

seq1  AATGGGATCTGATGCACTCGTCTTGTGTGTGTCTGAAGATAGCTGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCTGATGCACTCGTCTTGTGTGTGTCTGAAGATAGCTGTGGTG  200

seq1  TACTCATAGAAATATAAATAAATAACTCTTAAAAAAATTTTTTTTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATAGAAATATAAATAAATAACTCTTAAAAAAATTTTTTTTAGACA  250

seq1  GGGTTTCTGTTTGTAGCCCTGAGTGTCCTGGAACTAACTCTGTAGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTGTTTGTAGCCCTGAGTGTCCTGGAACTAACTCTGTAGAGCAG  300

seq1  GCTGGCCTCGAACTCAGAAATCTGCCTGCCTATGCCTCCCGAGTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCGAACTCAGAAATCTGCCTGCCTATGCCTCCCGAGTGCTGGG  350

seq1  ATTAAAGGCTTGCACCATCACACCTGTTTTTTTTTTTTTTAAGATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCTTGCACCATCACACCTGTTTTTTTTTTTTTTAAGATTTATT  400

seq1  TATTTAGTATATGTAAGTACACTGTAGTTATCCTAAGATACTCCAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTATATGTAAGTACACTGTAGTTATCCTAAGATACTCCAGAAGA  450

seq1  GGGCATCAGATTTCGTTATGGATGGTTGTGAGCTACTATGTGCTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAGATTTCGTTATGGATGGTTGTGAGCTACTATGTGCTGTTTGT  500

seq1  -AGCCCTGGGTGTCCTGGAACTAA-CTCTGTAGA  532
       ||||||||||||||||||||||| |||||||||
seq2  AAGCCCTGGGTGTCCTGGAACTAACCTCTGTAGA  534