BAC Information

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BAC

Clone NameB6Ng01-275K02
Chromosome12 (Build37)
Map Location 50,868,364 - 50,992,012
singlet/doubletdoublet
Overlap geneLOC665071, LOC665077
Upstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
Downstream geneLOC100039455, Prkcm
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275K02.bB6Ng01-275K02.g
ACCGA076617GA076618
length1,162984
definitionB6Ng01-275K02.b B6Ng01-275K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,990,859 - 50,992,012)(50,868,364 - 50,869,101)
sequence
gaattcaaacctaggataaaagtcaccaacattgatataggctccatatt
ccagaagtgctcctgagtttccatttgatgtcttcatttcttcatctttt
gtcttatctgccttgcactgtcctatttatgtgttgtgtgattcactggc
ctttcttcattttcttttgaacattttgcttttatcattttttcatgcag
tggacatggttatatctgcttgcaggaataaaggcagcagggagctgaaa
gggatatgaaatgagcaaacaggaagttaagaagcatagaggcctgggga
aaggcacttctttgagaatggaatataaggttttagtacccattatgtag
actgatgaattccaacagtcattttataaattcagttttctcctatgtac
tgtgatgttctttccatgttgatgaaagcatgaattgctctatcacacat
caaaccaatgacttgaattattgatagaactggacttcagagtaatactt
cctagggagtgttttaacctcctagagaacatttggcaatttcttgagtt
gtggttacttgaataagaagtataattcgtcttgaacatttgagtacttg
gtctcctgttggtggtccagtttagggaggttttgaaggtatatccttgc
tgtaagaagtattccactagtgataggctttgaaagctcaaagtcttgtc
ctatttgtctctctctgcttcacaattgtaggtcaaaatatgaatattaa
acttgctatttgagctgctatgcctgccaatcactggcatgcttcccctg
ttgtcatagactctaactctctggtattgtaaactcaaataaactctttt
ccatgagttgcataagttccatggtattttatcacagtaacagaaaagtt
acagaagccattttttggctggcattacttgaggtgatagaaagtgtgta
ctactctcagctcatagtgtaatacaaagtgcagctaagcaaatccacag
aagacaccacccctatttatagaggtatcctactctatttgccctaggat
tgtgatagtacttacagtgagaatattgatcaatgctgcagaaaaggtta
gaacagtattgaaagaatatcacctctttctctgataaatccacttctct
tctcattgaaat

gaattcccctaatcttgtatggaaatattctcatttctctatcaaccttg
aaagatatctttatggaatatggtatttttgattcctatttgtttacttt
cagaggttgaaatcttttactatctgctcttttggatttttatgcttgtt
gttgttttctctaccagaatttagaatttgttctttcctttgtatttata
acatcttgactatgatggatcctagagaccttcctatttttatttttatt
agttctttgaaattttcataaatttatacattgtttctctatcttatcca
gttcttaccatctgctctgactccatccaagatgctcatcacattttcct
caaaaatctattactagttttaaattgattgattgattgattgattggtt
gatttatgatttgcttattggttttaacccatggagtccatttaatgatg
ctagtacgtgcacagctgtggaacaatctaccaagaaatgtggaatctac
ttggacatgggaaatctaccactggcaattctcctaaaagaaaagggaat
cttcctcctctggtagttatcaattagtaatagtttttgttgcaggttat
tgatcacaatatgaacacttgagattgtgttatttactggaaagccctat
ttctagttgtgatgtggcttagctgtagcacacacctttaatacaagagc
tttctgtttattgtaaatagaattaaataaagtcaaccacaggcagagag
acaaagcaagaaacaagttcacaggaaatgaacatagagttcattatata
gagaagaggttttattttattttattttatcttattttatcttattttat
tttttgagacagagtagagaagtctttttccttttgggatgttgactgaa
gaggaatcatgtgggtgcttttttaaaaatttctctttctttctctctcc
ctctctctcttgctctctctctccctttcccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50990859_50992012
seq2: B6Ng01-275K02.b_45_1206 (reverse)

seq1  ATTTTAATGAGAAG---AGTG--ATTATCAGAG-AAGA-GTGATTATCTT  43
      |||| |||||||||   ||||   ||||||||| |||| |||||  ||||
seq2  ATTTCAATGAGAAGAGAAGTGGATTTATCAGAGAAAGAGGTGATATTCTT  50

seq1  TCAATACTG-TCTAA-CTTTTCTGCAGCAATTTGATCAATA-TCTCACTG  90
      ||||||||| ||||| |||||||||||||  |||||||||| ||||||||
seq2  TCAATACTGTTCTAACCTTTTCTGCAGCA--TTGATCAATATTCTCACTG  98

seq1  TAAAGTACTATCACAATCCTAGGCAAATTAGAGTAGGATACCTCTAT-AA  139
      | |||||||||||||||||||||  || ||||||||||||||||||| ||
seq2  T-AAGTACTATCACAATCCTAGGGCAAATAGAGTAGGATACCTCTATAAA  147

seq1  TAGGG--TGTGTCCTTCTGTGGATTTGCTTAGCTGCACCTTTGTATTACA  187
      |||||   |||| |||||||||||||||||||||||| ||||||||||||
seq2  TAGGGGTGGTGT-CTTCTGTGGATTTGCTTAGCTGCA-CTTTGTATTACA  195

seq1  CCTATGAGCTGAGAGTAGTACACACCTTCTATCACCTCAAGTAATGCCAG  237
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -CTATGAGCTGAGAGTAGTACACACTTTCTATCACCTCAAGTAATGCCAG  244

seq1  CC-AAAAATGGCTTCTGTAACTTTTCTGTTACTGTGATAAAATACCATGG  286
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATGGCTTCTGTAACTTTTCTGTTACTGTGATAAAATACCATGG  294

seq1  AACTTATGCAACTCATGGAAAAGAGTTTATTTGAGTTTACAATACCAGAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGCAACTCATGGAAAAGAGTTTATTTGAGTTTACAATACCAGAG  344

seq1  AGTTAGAGTCTATGACAACAGGGGAAGCATGCCAGTGATTGGCAGGCATA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGTCTATGACAACAGGGGAAGCATGCCAGTGATTGGCAGGCATA  394

seq1  GCAGCTCAAATAGCAAGTTTAATATTCATATTTTGACCTACAATTGTGAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAAATAGCAAGTTTAATATTCATATTTTGACCTACAATTGTGAA  444

seq1  GCAGAGAGAGACAAATAGGACAAGACTTTGAGCTTTCAAAGCCTATCACT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAGACAAATAGGACAAGACTTTGAGCTTTCAAAGCCTATCACT  494

seq1  AGTGGAATACTTCTTACAGCAAGGATATACCTTCAAAACCTCCCTAAACT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATACTTCTTACAGCAAGGATATACCTTCAAAACCTCCCTAAACT  544

seq1  GGACCACCAACAGGAGACCAAGTACTCAAATGTTCAAGACGAATTATACT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCAACAGGAGACCAAGTACTCAAATGTTCAAGACGAATTATACT  594

seq1  TCTTATTCAAGTAACCACAACTCAAGAAATTGCCAAATGTTCTCTAGGAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCAAGTAACCACAACTCAAGAAATTGCCAAATGTTCTCTAGGAG  644

seq1  GTTAAAACACTCCCTAGGAAGTATTACTCTGAAGTCCAGTTCTATCAATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACACTCCCTAGGAAGTATTACTCTGAAGTCCAGTTCTATCAATA  694

seq1  ATTCAAGTCATTGGTTTGATGTGTGATAGAGCAATTCATGCTTTCATCAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCATTGGTTTGATGTGTGATAGAGCAATTCATGCTTTCATCAA  744

seq1  CATGGAAAGAACATCACAGTACATAGGAGAAAACTGAATTTATAAAATGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGAACATCACAGTACATAGGAGAAAACTGAATTTATAAAATGA  794

seq1  CTGTTGGAATTCATCAGTCTACATAATGGGTACTAAAACCTTATATTCCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAATTCATCAGTCTACATAATGGGTACTAAAACCTTATATTCCA  844

seq1  TTCTCAAAGAAGTGCCTTTCCCCAGGCCTCTATGCTTCTTAACTTCCTGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGAAGTGCCTTTCCCCAGGCCTCTATGCTTCTTAACTTCCTGT  894

seq1  TTGCTCATTTCATATCCCTTTCAGCTCCCTGCTGCCTTTATTCCTGCAAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATTTCATATCCCTTTCAGCTCCCTGCTGCCTTTATTCCTGCAAG  944

seq1  CAGATATAACCATGTCCACTGCATGAAAAAATGATAAAAGCAAAATGTTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATAACCATGTCCACTGCATGAAAAAATGATAAAAGCAAAATGTTC  994

seq1  AAAAGAAAATGAAGAAAGGCCAGTGAATCACACAACACATAAATAGGACA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATGAAGAAAGGCCAGTGAATCACACAACACATAAATAGGACA  1044

seq1  GTGCAAGGCAGATAAGACAAAAGATGAAGAAATGAAGACATCAAATGGAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGCAGATAAGACAAAAGATGAAGAAATGAAGACATCAAATGGAA  1094

seq1  ACTCAGGAGCACTTCTGGAATATGGAGCCTATATCAATGTTGGTGACTTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGCACTTCTGGAATATGGAGCCTATATCAATGTTGGTGACTTT  1144

seq1  TATCCTAGGTTTGAATTC  1154
      ||||||||||||||||||
seq2  TATCCTAGGTTTGAATTC  1162


seq1: chr12_50868364_50869101
seq2: B6Ng01-275K02.g_73_811

seq1  GAATTCCCCTAAT-TTGTATGGAAATATTCTCATTTCTCTATCAACCTTG  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAATCTTGTATGGAAATATTCTCATTTCTCTATCAACCTTG  50

seq1  AAAGATATCTTTATGGAATATGGTATTTTTGATTCCTATTTGTTTACTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATCTTTATGGAATATGGTATTTTTGATTCCTATTTGTTTACTTT  100

seq1  CAGAGGTTGAAATCTTTTACTATCTGCTCTTTTGGATTTTTATGCTTGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTGAAATCTTTTACTATCTGCTCTTTTGGATTTTTATGCTTGTT  150

seq1  GTTGTTTTCTCTACCAGAATTTAGAATTTGTTCTTTCCTTTGTATTTATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTCTCTACCAGAATTTAGAATTTGTTCTTTCCTTTGTATTTATA  200

seq1  ACATCTTGACTATGATGGATCCTAGAGACCTTCCTATTTTTATTTTTATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGACTATGATGGATCCTAGAGACCTTCCTATTTTTATTTTTATT  250

seq1  AGTTCTTTGAAATTTTCATAAATTTATACATTGTTTCTCTATCTTATCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGAAATTTTCATAAATTTATACATTGTTTCTCTATCTTATCCA  300

seq1  GTTCTTACCATCTGCTCTGACTCCATCCAAGATGCTCATCACATTTTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACCATCTGCTCTGACTCCATCCAAGATGCTCATCACATTTTCCT  350

seq1  CAAAAATCTATTACTAGTTTTAAATTGATTGATTGATTGATTGATTGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTATTACTAGTTTTAAATTGATTGATTGATTGATTGATTGGTT  400

seq1  GATTTATGATTTGCTTATTGGTTTTAACCCATGGAGTCCATTTAATGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGATTTGCTTATTGGTTTTAACCCATGGAGTCCATTTAATGATG  450

seq1  CTAGTACGTGCACAGCTGTGGAACAATCTACCAAGAAATGTGGAATCTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACGTGCACAGCTGTGGAACAATCTACCAAGAAATGTGGAATCTAC  500

seq1  TTGGACATGGGAAATCTACCACTGGCAATTCTCCTAAAAGAAAAGGGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATGGGAAATCTACCACTGGCAATTCTCCTAAAAGAAAAGGGAAT  550

seq1  CTTCCTCCTCTGGTAGTTATCAATTAGTAATAGTTTTTGTTGCAGGTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTCTGGTAGTTATCAATTAGTAATAGTTTTTGTTGCAGGTTAT  600

seq1  TGATCACAATATGAACACTTGAGATTGTGTTATTTACTGGAAAGCCCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAATATGAACACTTGAGATTGTGTTATTTACTGGAAAGCCCTAT  650

seq1  TTCTAGTTGTGATGTGGCTTAGCTGTAGCACACACCTTTAATACAAGAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTGTGATGTGGCTTAGCTGTAGCACACACCTTTAATACAAGAGC  700

seq1  TTTCTGTTTATTGTAAATAGAATTAAATAAAGTCAACCA  738
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTATTGTAAATAGAATTAAATAAAGTCAACCA  739


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