BAC Information

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BAC

Clone NameB6Ng01-276B23
Chromosome12 (Build37)
Map Location 34,703,564 - 34,823,479
singlet/doubletdoublet
Overlap genenone
Upstream gene1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276B23.bB6Ng01-276B23.g
ACCGA076980GA076981
length1,021525
definitionB6Ng01-276B23.b B6Ng01-276B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,822,533 - 34,823,479)(34,703,564 - 34,704,094)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttggagataaatattcttaaaataaa
gattccaaaaagaataagtatttcaatatttatggtacctttacctagtc
atagtttaccttttcactggctactgttgaaatattgggctttagataga
cttaggtcattatagccttgtagtctttgaggaattaatttcctttatta
cattcagttttcttatccgtaaaaaaaaatagacataagtcctatactcc
tagacttctaatgatgatcaaatgaggtaatattttaaaatgtaagaact
aaaagtagataggaagtagagaaaatattattatagatttctcttcatca
atttataggagaaataaaaatctattatgtgtcaaattgatttttttatt
tgtggttcttagctatatgtaaattatgaacaccgtggacttttggcaac
aaggtctgggaaggttgtgactgttacaactagagggtgctgctagcata
caatgggaagaggaaaggcatggaaactgaaaattgacatccataggccc
cgtctccatagcaacacatcatctgattttaaatgtaatagagtggagat
tcagaaatattactcatcttt

aactccatgagcctatgggagccatgtttagtcaaagtaccactggaagc
aagcactcttagccagtgagcttattcatcactacagtcttcagttcagt
gtctggatttaacaggagacacttgtgagcattaaatatccaaataaaag
gagactacaaaatgctaaatgtgcattataaatcatgattatggagagat
tctgtattgaggaatgggctatgggtatgggaagagaaatgggatatata
attttggaaagcctgggaagggaccagagagggaggattaaatggagagg
tagatggaagaaggtggaatgaaggatatatgggaccacacaagtaacac
tggggccacttgaagggtcactatggaagcctactactatagaagcttcc
taaatatatacatatgtgaaagagagctaaatggaatcaccaaatatcag
gggggataatgccccaactacaaatccttcaccatcaacttgaaacccca
gtgctagaaatatgagttgtatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34822533_34823479
seq2: B6Ng01-276B23.b_45_993 (reverse)

seq1  GGCCTATGGATGTCAATTTTCAG-TTCCATGCC-TTCCTCTTCCCATTGT  48
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  GGCCTATGGATGTCAATTTTCAGTTTCCATGCCTTTCCTCTTCCCATTGT  50

seq1  ATGCTAGCAGCACCCTCTAGTTGTAACAGTCACAACCTTCCCAGACCTTG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCAGCACCCTCTAGTTGTAACAGTCACAACCTTCCCAGACCTTG  100

seq1  TTGCCAAAAGTCCACGGTGTTCATAATTTACATATAGCTAAGAACCACAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAAGTCCACGGTGTTCATAATTTACATATAGCTAAGAACCACAA  150

seq1  ATAAAAAAATCAATTTGACACATAATAGATTTTTATTTCTCCTATAAATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATCAATTTGACACATAATAGATTTTTATTTCTCCTATAAATT  200

seq1  GATGAAGAGAAATCTATAATAATATTTTCTCTACTTCCTATCTACTTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGAAATCTATAATAATATTTTCTCTACTTCCTATCTACTTTTA  250

seq1  GTTCTTACATTTTAAAATATTACCTCATTTGATCATCATTAGAAGTCTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACATTTTAAAATATTACCTCATTTGATCATCATTAGAAGTCTAG  300

seq1  GAGTATAGGACTTATGTCTATTTTTTTTTACGGATAAGAAAACTGAATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGGACTTATGTCTATTTTTTTTTACGGATAAGAAAACTGAATGT  350

seq1  AATAAAGGAAATTAATTCCTCAAAGACTACAAGGCTATAATGACCTAAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGAAATTAATTCCTCAAAGACTACAAGGCTATAATGACCTAAGT  400

seq1  CTATCTAAAGCCCAATATTTCAACAGTAGCCAGTGAAAAGGTAAACTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAAAGCCCAATATTTCAACAGTAGCCAGTGAAAAGGTAAACTATG  450

seq1  ACTAGGTAAAGGTACCATAAATATTGAAATACTTATTCTTTTTGGAATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTAAAGGTACCATAAATATTGAAATACTTATTCTTTTTGGAATCT  500

seq1  TTATTTTAAGAATATTTATCTCCAACTGGTTGTTATCGTGTAGAAGAATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAAGAATATTTATCTCCAACTGGTTGTTATCGTGTAGAAGAATG  550

seq1  CGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  600

seq1  CAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  650

seq1  TGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGA  700

seq1  ACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTAAT  750

seq1  GAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  800

seq1  GACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  850

seq1  GGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAA  900

seq1  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  947
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  949


seq1: chr12_34703564_34704094
seq2: B6Ng01-276B23.g_66_596

seq1  GAATTCAACTCCATGAGCCTATGGGAGCCATGTTTAGTCAAAGTACCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCATGAGCCTATGGGAGCCATGTTTAGTCAAAGTACCACT  50

seq1  GGAAGCAAGCACTCTTAGCCAGTGAGCTTATTCATCACTACAGTCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGCACTCTTAGCCAGTGAGCTTATTCATCACTACAGTCTTCAG  100

seq1  TTCAGTGTCTGGATTTAACAGGAGACACTTGTGAGCATTAAATATCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTCTGGATTTAACAGGAGACACTTGTGAGCATTAAATATCCAAA  150

seq1  TAAAAGGAGACTACAAAATGCTAAATGTGCATTATAAATCATGATTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGACTACAAAATGCTAAATGTGCATTATAAATCATGATTATGG  200

seq1  AGAGATTCTGTATTGAGGAATGGGCTATGGGTATGGGAAGAGAAATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTGTATTGAGGAATGGGCTATGGGTATGGGAAGAGAAATGGGA  250

seq1  TATATAATTTTGGAAAGCCTGGGAAGGGACCAGAGAGGGAGGATTAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTTTGGAAAGCCTGGGAAGGGACCAGAGAGGGAGGATTAAATG  300

seq1  GAGAGGTAGATGGAAGAAGGTGGAATGAAGGATATATGGGACCACACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTAGATGGAAGAAGGTGGAATGAAGGATATATGGGACCACACAAG  350

seq1  TAACACTGGGGCCACTTGAAGGGTCACTATGGAAGCCTACTACTATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGGGGCCACTTGAAGGGTCACTATGGAAGCCTACTACTATAGAA  400

seq1  GCTTCCTAAATATATACATATGTGAAAGAAATCTAAATGGAATCACCAAA  450
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  GCTTCCTAAATATATACATATGTGAAAGAGAGCTAAATGGAATCACCAAA  450

seq1  TATCAGGGGGGATAATGCCCCAACTACAAATCCTTCACCATCAACTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGGGGATAATGCCCCAACTACAAATCCTTCACCATCAACTTGAA  500

seq1  ACCCCAGTGCTAGAAATATGAGTTGTATCTA  531
      |||||||||||||||||||||||||||||||
seq2  ACCCCAGTGCTAGAAATATGAGTTGTATCTA  531


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