BAC Information

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BAC

Clone NameB6Ng01-278A18
Chromosome12 (Build37)
Map Location 12,907,739 - 13,073,859
singlet/doubletdoublet
Overlap geneLOC100043215, Mycn, EG668473
Upstream geneLOC100043209, D12Ertd553e
Downstream geneLOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278A18.bB6Ng01-278A18.g
ACCGA078399GA078400
length1,133448
definitionB6Ng01-278A18.b B6Ng01-278A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,907,739 - 12,908,859)(13,073,406 - 13,073,859)
sequence
gaattcactgtggtcaaagaagacatggtgagtagctatggtgaagcagg
gagcagctggaagcagagtccaaagaatattgtgatccattttaagtttg
gatactattctgtcagccgtgagggttatggaacatattaaataacaagg
caaataatgagactggtctttagaattcttatttattaattttaaagtta
ttaaaataatgtaggtaaagctaaatatgtcagaatatacttgtcacttt
tgtacttgagaaagaaggattaacatgagtccaatgccaactttccctac
aaagtaagaatgtaccccaacacatggtgcggggaggagaggaaaaaaag
gaataaagaacctggcgtggtggcacacgcctttaatcccagcactcggg
aggcagaggcaggcagatttctgagttcgagaccagcctggtctacaaag
tgagttccaggacagccaggtctcgaaaaaagaaaatgaaaagaaataaa
atgaaaaaaagcttagtagctgggatgtgattcagtttctatagcaatag
catgataaagcagtgggcttaatacccagccctgcataaacctagatatg
gtaatacaggcctataatcaacacttggaatacaaaggcaggaggttcaa
ggccaggcttagctacagaataaatttgatggcagcctaggctaaatgag
actgttcttcaaataataaatcataattttaaaagtactatgtgatggtg
ttagcagatgaaataacgcagagaggaattaagaaaacataatctgggct
gcagagatagatggctcagcagttaagaacactggccgctcttccaggag
accaggtttaatccccagcacccatattgggagcttacactgcctgttac
tcctgctccagggggattccagtggcattcatagagacattaccaaatta
aattattttaaaaataaataaaagaaaaacttatctgtctactgcccatt
cctcttcttcttttccttactcccaggtactgctttgacatcctggcatg
ccttagattttaggatatttattagggcctttctcctttgaattcaacat
ttaccaacatacgagtatgtaatgcaataggga

ctcaggcaagggctttgaaagaagctaggccatgcttttgaggggagggt
gacctggggcctgcagggacaaggttaattgcttggagcattggagaatg
gctagtgagggaaggccctgcttcctgtatggccctggaagacatttgtc
gcccacagcttccataataagacattcctgctaatttgccatgagctgaa
agggatttctgtttttagctttggggtctgtggcaactgttttgttttag
atgaaaattaagtggggacaaggagcccaggctggtggggggatgggagg
tggagccataattgatgtgcattactggtaattacctagctctttctttc
actcatcatgttgacagagaaatctattacccagcagctccgtttccaca
aattgcccttccctgaggactgggggagtggggggtactggaggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12907739_12908859
seq2: B6Ng01-278A18.b_48_1180

seq1  GAATTCACTGTGGTCAAAGAAGACATGGTGAGTAGCTATGGTGAAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGGTCAAAGAAGACATGGTGAGTAGCTATGGTGAAGCAGG  50

seq1  GAGCAGCTGGAAGCAGAGTCCAAAGAATATTGTGATCCATTTTAAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTGGAAGCAGAGTCCAAAGAATATTGTGATCCATTTTAAGTTTG  100

seq1  GATACTATTCTGTCAGCCGTGAGGGTTATGGAACATATTAAATAACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATTCTGTCAGCCGTGAGGGTTATGGAACATATTAAATAACAAGG  150

seq1  CAAATAATGAGACTGGTCTTTAGAATTCTTATTTATTAATTTTAAAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGAGACTGGTCTTTAGAATTCTTATTTATTAATTTTAAAGTTA  200

seq1  TTAAAATAATGTAGGTAAAGCTAAATATGTCAGAATATACTTGTCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATGTAGGTAAAGCTAAATATGTCAGAATATACTTGTCACTTT  250

seq1  TGTACTTGAGAAAGAAGGATTAACATGAGTCCAATGCCAACTTTCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGAGAAAGAAGGATTAACATGAGTCCAATGCCAACTTTCCCTAC  300

seq1  AAAGTAAGAATGTACCCCAACACATGGTGCGGGGAGGAGAGGAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGAATGTACCCCAACACATGGTGCGGGGAGGAGAGGAAAAAAAG  350

seq1  GAATAAAGAACCTGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGAACCTGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGG  400

seq1  AGGCAGAGGCAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAAG  450

seq1  TGAGTTCCAGGACAGCCAGGTCTCGAAAAAAGAAAATGAAAAGAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGCCAGGTCTCGAAAAAAGAAAATGAAAAGAAATAAA  500

seq1  ATGAAAAAAAGCTTAGTAGCTGGGATGTGATTCAGTTTCTATAGCAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAGCTTAGTAGCTGGGATGTGATTCAGTTTCTATAGCAATAG  550

seq1  CATGATAAAGCAGTGGGCTTAATACCCAGCCCTGCATAAACCTAGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAAGCAGTGGGCTTAATACCCAGCCCTGCATAAACCTAGATATG  600

seq1  GTAATACAGGCCTATAATCAACACTTGGAATACAAAGGCAGGAGGTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACAGGCCTATAATCAACACTTGGAATACAAAGGCAGGAGGTTCAA  650

seq1  GGCCAGGCTTAGCTACAGAATAAATTTGATGGCAGCCTAGGCTAAATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTTAGCTACAGAATAAATTTGATGGCAGCCTAGGCTAAATGAG  700

seq1  ACTGTTCTTCAAATAAT-AATCATAATTTTAAAAGTACTATGTGATGGTG  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGTTCTTCAAATAATAAATCATAATTTTAAAAGTACTATGTGATGGTG  750

seq1  TTAGCAGATGAAATAACGCAGAGAGGAATTAAGAAAACATAATCTGGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGATGAAATAACGCAGAGAGGAATTAAGAAAACATAATCTGGGCT  800

seq1  GCAGAGATAGATGGCTCAGCAGTTAAGAACACTGGCCGCTCTTCCAGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATAGATGGCTCAGCAGTTAAGAACACTGGCCGCTCTTCCAGGAG  850

seq1  ACCCAGGTTTAATCCCCAGCACCCATA-TGGGAGCTTACAACTGCCTGTT  898
      | ||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  A-CCAGGTTTAATCCCCAGCACCCATATTGGGAGCTTAC-ACTGCCTGTT  898

seq1  ACTCCTGCTCCAGGGG--ATCCAGTGCCA-TCATAGAGACAT--ACAAAA  943
      ||||||||||||||||   ||||||| || ||||||||||||   |||| 
seq2  ACTCCTGCTCCAGGGGGATTCCAGTGGCATTCATAGAGACATTACCAAAT  948

seq1  TAAATTATTTAAAAAATAAATAAAAAGAAAAACTAATCTGTCTACTGCCC  993
      |||||||||| |||||||||| |||||||||||| |||||||||||||||
seq2  TAAATTATTTTAAAAATAAAT-AAAAGAAAAACTTATCTGTCTACTGCCC  997

seq1  AATCCTC-TCTTCTTT--CCTAC-CCCAGGTAACTGCCTTTGACATCCTG  1039
      | ||||| ||||||||  | ||| ||||||| |||| |||||||||||||
seq2  ATTCCTCTTCTTCTTTTCCTTACTCCCAGGT-ACTG-CTTTGACATCCTG  1045

seq1  GCATGCCCTAGATTTTTAGATATTTA-TAGGG-CTTTCT-CTTTGATTTC  1086
      ||||||| ||||||||  |||||||| ||||| |||||| |||||| |||
seq2  GCATGCCTTAGATTTTAGGATATTTATTAGGGCCTTTCTCCTTTGAATTC  1095

seq1  AACATTTA-CAACATACGAGTATGT-ATG-TATAGGGA  1121
      |||||||| |||||||||||||||| |||  |||||||
seq2  AACATTTACCAACATACGAGTATGTAATGCAATAGGGA  1133


seq1: chr12_13073406_13073859
seq2: B6Ng01-278A18.g_67_520 (reverse)

seq1  ATTTCCTCCAGTACCCCCCACTCCCCGAGTCCTCAGGGAAGGGCAATTTG  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTCCTCCAGTACCCCCCACTCCCCCAGTCCTCAGGGAAGGGCAATTTG  50

seq1  TGGAAACGGAGCTGCTGGGTAATAGATTTCTCTGTCAACATGATGAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACGGAGCTGCTGGGTAATAGATTTCTCTGTCAACATGATGAGTGA  100

seq1  AAGAAAGAGCTAGGTAATTACCAGTAATGCACATCAATTATGGCTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGCTAGGTAATTACCAGTAATGCACATCAATTATGGCTCCACC  150

seq1  TCCCATCCCCCCACCAGCCTGGGCTCCTTGTCCCCACTTAATTTTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCCCCCACCAGCCTGGGCTCCTTGTCCCCACTTAATTTTCATCT  200

seq1  AAAACAAAACAGTTGCCACAGACCCCAAAGCTAAAAACAGAAATCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAGTTGCCACAGACCCCAAAGCTAAAAACAGAAATCCCTTT  250

seq1  CAGCTCATGGCAAATTAGCAGGAATGTCTTATTATGGAAGCTGTGGGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATGGCAAATTAGCAGGAATGTCTTATTATGGAAGCTGTGGGCGA  300

seq1  CAAATGTCTTCCAGGGCCATACAGGAAGCAGGGCCTTCCCTCACTAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCTTCCAGGGCCATACAGGAAGCAGGGCCTTCCCTCACTAGCCA  350

seq1  TTCTCCAATGCTCCAAGCAATTAACCTTGTCCCTGCAGGCCCCAGGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAATGCTCCAAGCAATTAACCTTGTCCCTGCAGGCCCCAGGTCAC  400

seq1  CCTCCCCTCAAAAGCATGGCCTAGCTTCTTTCAAAGCCCTTGCCTGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCAAAAGCATGGCCTAGCTTCTTTCAAAGCCCTTGCCTGAGGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454


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