BAC Information

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BAC

Clone NameB6Ng01-278J04
Chromosome12 (Build37)
Map Location 42,687,002 - 42,688,110
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043157, LOC100043162, Lrrn3
Downstream geneImmp2l, EG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278J04.bB6Ng01-278J04.g
ACCGA078782GA078783
length1,2641,042
definitionB6Ng01-278J04.b B6Ng01-278J04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatctcaaccatattaaccttaactaatacagatattggtaccag
gatattggtgtattgaggtgatagacttgactgtgctgttttggagagaa
ttgcagaaagactgtgcaacattgggctaaaaacattgagtattgtgagc
tcaagtggcctgttctgtaaaagcatagaagataatactgagaacagaca
gatgatagatgcctggcttgtgaatttcagagaaaaatttaaagactgga
ctgaggccatttgttgactttgaatgaataatgaagttcagatcagcagg
ggctgaggaaccagttgtgactaacaagaaactagcaccactgaagggaa
accttttctttactagaacaattgatccttgttacttgggaattagaaat
cagttacgattaagaagaatccagcatcactaatgaaatcattttggaag
tgtttcttcagggtcaatacacagaaactgtgtttcagagcttgtcaagg
tatacctcatgctagcagctgaattttgtaatctgtaagaatctcccaga
tggtactagttttgaagtcatgaagacatcatgggaagtagctgaggctt
gcctgagaaagtcagtaagcactactctttcatggcctctgcatcagctc
ctgaccccagcttcctaccccttttgctcttttacccagaattcctttga
tgataaactacagaagtgtaaatgaaataaaccctttcctagtcacattg
ctttaggtcatgttatttcaaacacaacaataacaatttctaagacagaa
ctcaacattacatgtcattaaagaaagtgctgaacacaaccaatgaactc
tcattgcacatatgtttgaatggccacaagtcaaaatactgatggtatca
aaactctactaaagctattataacattgtatctggggatctacaataagc
atatctgtttaaaaagaacagcttcttatttttcttacaaacctaaaaca
taactattttaatttattatcattctaaaaagcagtgctccttgaatttt
acttaacttgaacctaaaacttaagtccaccattaaaaagactgcattac
caacctatatgtggttttctttcacaacctataaaacttggtaggctacc
tacgattggccactcaataggcaaagttagtatatatcatggaatattca
gaccacgtgcatacatatttacgcatcctcaggtactcacgtgcttcctg
cagtcatgagtcct
gaattctttctaagctctaaatcagctaatcctcttaagacccaaaagag
ggtgtgtggagacagggtagacatgactcctcatctgatacctttgacca
acgagtctttggtttataccaaaaccaaaatgaaaacaaatcaatgtaaa
gcaaaagaaacaatatatctctagccttgcagaatgatcttaggttctct
taagtgctttataatgctttcttgaccctttagtgcatccactagcatcc
ttcagtgttcaggtatccattcatcctgaagctctgatgatgccccatgg
aagatagtcgtagtcttcaacatatattaactagctcctttttgaagcat
ggatttgcttttgttccttctcctaaatgggtatctgtcttcaaaaataa
atccaaataatggaatgagagtcgttctgtaaatccataattgccgaata
ctgggcttatctagaatacacaaacctgttcatgcacaggtataactccc
tgtctagggatacaagtaagtaacaaattgtgtagattaattatctttca
tactggagcagtgagtcatcacattgatgtcatgtgactaactgagctgg
agagattattaaatggaatggtaatattgctaacagccagatttaagtgg
cttccccctatcattacaaagtatgaatgcatttgtgctgggtaattttg
atcttagctttataaatagttcagaacaagcttcttattaatatcgaaga
tcttatttttatagccctaatagacataatagctgtaataagaagcaacc
tcttctttgttcttctttagcctctgtaagggtgagtataatgctgaaag
agttctaactgatgtgtgccagggcagcatctctgggcagactattcaca
acctgtgattaagacagctggattctacatgtaaccgacagcttgattga
agagcatcagaatgatagccatgcaaacagaagcatggcgcaaatctccg
atgtgggtttattacattccttcttgtcaccacttctgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_42687002_42688110
seq2: B6Ng01-278J04.g_2_1108

seq1  ATATATATAAAACTTACAATATATCTATTTTGTAGTGTATAGGCATAATT  50
                                                        
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50

seq1  AACCCTAACACTTGAGAATTCTTTCTAAGCTCTAAATCAGCTAATCCTCT  100
                     |||||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNGAATTCTTTCTAAGCTCTAAATCAGCTAATCCTCT  100

seq1  TAAGACCCAAAAGAGGGTGTGTGGAGACAGGGTAGACATGACTCCTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCAAAAGAGGGTGTGTGGAGACAGGGTAGACATGACTCCTCATC  150

seq1  TGATACCTTTGACCAACGAGTCTTTGGTTTATACCAAAACCAAAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTTTGACCAACGAGTCTTTGGTTTATACCAAAACCAAAATGAAA  200

seq1  ACAAATCAATGTAAAGCAAAAGAAACAATATATCTCTAGCCTTGCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAATGTAAAGCAAAAGAAACAATATATCTCTAGCCTTGCAGAAT  250

seq1  GATCTTAGGTTCTCTTAAGTGCTTTATAATGCTTTCTTGACCCTTTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGGTTCTCTTAAGTGCTTTATAATGCTTTCTTGACCCTTTAGTG  300

seq1  CATCCACTAGCATCCTTCAGTGTTCAGGTATCCATTCATCCTGAAGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTAGCATCCTTCAGTGTTCAGGTATCCATTCATCCTGAAGCTCT  350

seq1  GATGATGCCCCATGGAAGATAGTCGTAGTCTTCAACATATATTAACTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGCCCCATGGAAGATAGTCGTAGTCTTCAACATATATTAACTAGC  400

seq1  TCCTTTTTGAAGCATGGATTTGCTTTTGTTCCTTCTCCTAAATGGGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGAAGCATGGATTTGCTTTTGTTCCTTCTCCTAAATGGGTATC  450

seq1  TGTCTTCAAAAATAAATCCAAATAATGGAATGAGAGTCGTTCTGTAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAAAAATAAATCCAAATAATGGAATGAGAGTCGTTCTGTAAATC  500

seq1  CATAATTGCCGAATACTGGGCTTATCTAGAATACACAAACCTGTTCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGCCGAATACTGGGCTTATCTAGAATACACAAACCTGTTCATGC  550

seq1  ACAGGTATAACTCCCTGTCTAGGGATACAAGTAAGTAACAAATTGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATAACTCCCTGTCTAGGGATACAAGTAAGTAACAAATTGTGTAG  600

seq1  ATTAATTATCTTTCATACTGGAGCAGTGAGTCATCACATTGATGTCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATCTTTCATACTGGAGCAGTGAGTCATCACATTGATGTCATGT  650

seq1  GACTAACTGAGCTGGAGAGATTATTAAATGGAATGGTAATATTGCTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACTGAGCTGGAGAGATTATTAAATGGAATGGTAATATTGCTAACA  700

seq1  GCCAGATTTAAGTGGCTTCCCCCTATCATTACAAAGTATGAATGCATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTTAAGTGGCTTCCCCCTATCATTACAAAGTATGAATGCATTTG  750

seq1  TGCTGGGTAATTTTGATCTTAGCTTTATAAATAGTTCAGAACAAGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTAATTTTGATCTTAGCTTTATAAATAGTTCAGAACAAGCTTCT  800

seq1  TATTAATATCGAAGATCTTATTTTTATAGCCCTAATAGACATAATAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATATCGAAGATCTTATTTTTATAGCCCTAATAGACATAATAGCTG  850

seq1  TAATAAGAAGCAACCTCTTCTTTGTTCTTCTTTAGCCTCTGTAAGGGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAAGCAACCTCTTCTTTGTTCTTCTTTAGCCTCTGTAAGGGTGA  900

seq1  GTATAATGCTGAAAGAGTTCTAACTGATGTGTGCCAGGG-AGCATCTCTG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTATAATGCTGAAAGAGTTCTAACTGATGTGTGCCAGGGCAGCATCTCTG  950

seq1  GGCAGACAATTCACAAACCTGTGATTAAGACAGCTGGGATTCTACATGTA  999
      ||||||| |||||| |||||||||||||||||||| ||||||||||||||
seq2  GGCAGACTATTCAC-AACCTGTGATTAAGACAGCT-GGATTCTACATGTA  998

seq1  ACCGACAGCTTGATTGGAGAGCAGCAGAATGATAGCCATGCAAACAGAAG  1049
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  ACCGACAGCTTGATTGAAGAGCATCAGAATGATAGCCATGCAAACAGAAG  1048

seq1  CATGGGCGCAAATCTCTGAATGTGGG-TTATTAAATTCACTTATTCT-AA  1097
      ||| |||||||||||| | ||||||| |||||| |||| ||| || | | 
seq2  CAT-GGCGCAAATCTCCG-ATGTGGGTTTATTACATTC-CTTCTTGTCAC  1095

seq1  CACTTCTGATGA  1109
      ||||||||||||
seq2  CACTTCTGATGA  1107