BAC Information

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BAC

Clone NameB6Ng01-279I23
Chromosome12 (Build37)
Map Location 18,142,080 - 18,246,603
singlet/doubletdoublet
Overlap geneLOC100042573, LOC668539, LOC100043324, LOC636282
Upstream geneKcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297
Downstream geneEG632781, LOC668541, LOC673160, 5730507C01Rik, EG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I23.bB6Ng01-279I23.g
ACCGA079510GA079511
length1,146984
definitionB6Ng01-279I23.b B6Ng01-279I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,245,455 - 18,246,603)(18,142,080 - 18,143,058)
sequence
gaattcaactcagagcaacagttgccagatgtgaagtcctctgagttggg
ctggaaacaggtacactgtctttagggttcaactctgggccacagttgca
ggagataaaaccttctgtggtgagcacagaggttaagctgctagaagagt
cacctcaggaattgaagcataaacctagattgcaatttaggaaatcttgt
gactggagtcacagtaaaaatgttatggcacccaacaccgagatacaaga
tgtagaattatctgacttgcaccctagtccagaacttcagggtataaaat
ctaaggtgttctgtcctaggttacacttggaagatgtgatgcctgcatgt
actcccaatttaaattctcaataggtaaattccagtgagtatatatctgg
gccatattttcaagatacaaattcctctacatgtattccagagacaaatg
ttcattgtataagttttgagtgcaatccaggaatacatttgcatggaacg
aatacttcctcatgcttttcaggatcaaaatagcaagtttagattcaatt
gggagcaacactgaatcatatttgcaagatgaaaattctactgaatgcac
tccagggtcaagtccttagtgtgaaaagtcttctgcatgcacaccagaac
caaaacctccatttgtaaattcccctgagtgcaatcctgaatcatatttg
caaaatgtaaatagagtccagatttgtagaaaaatctccaaggcattgtc
ctcaagacttaggacctctgggggtgggttctaagaaaagatctcaaagg
gaacaatctatagtatcaataccaaggccattctgtcacatcccagatcc
tgtttcaggaataacaccagggcaggacctcagattcccaaattaaaaat
ttgacctctatgctgtgactgaaaatcctctgagttgtcatgcaagcaaa
ccagtcagttgagggaaattcagactctgtagagctcacttttggtacat
gcagccagcagaggtagcggctaagttacaggacctcagaatctgagcct
ggaagtgcaaactcagtccataaggaatcacctggaatcaaatgttaaca
ttaattccagggcattaatccaggcaacaagatcaagtgacagaat
gaattcccattcggcttgtaccatggtcaactccctatgcaaaacacctg
cctttacccctggcttcttaaggctgtgagagggcgcacacacagaacat
ggtccctatcattgcatccccaactaactgtccctacatcttttccctct
aaagtgccctggaggatttcactgtcctgtagggggcgagctaccaacaa
tgtcttcactggcccttcactgaagttctggtggagaattcagggggttc
tgaggctaatggtgggattggggagcaaaagggtgggttcctctccagcc
gggaagccagtatccccggttccactccacgccctctgcgtaatgttgct
agaggtcatggcgggtgctgggtgggagccgggcaccgcagctcgggaga
gggcgcgccctcgaaccccagcacctcccgaaggcagactcaaggcggcg
tcccacaggcactgacaggtccggagcgcacatcgcccttttttctgtgg
cctccgcttcctggcagcgcggtggcggcaagtgccccgattggcggcca
gacctttgccccgccccgccccgcccctccctggcggacaccgctcttcc
ccgccccccccccgtcccgcctctctccgcgggaggccttcgggccagcg
gcttggtggcgcgcagtttaccctggctgtgcgcgcccgcagagaacggg
gcatcggcgtctccgggagcacagcgggcagagctgcggactgcacgcgc
ccctgctgccaccggccgtcccgcggtggctcccgcgccctgcggcgact
tccgagcccgcgctccccttttgtccgaatccccgagcggcggctgaggc
tgggtccgagccccgcgtcctggggcgactgaggcggcgaacgttcgcgc
cccggcgcccttgagatgccgggactcgatctccgtgtcggaattcgtgg
gctgagaccttgaaggactacaggcgccccacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_18245455_18246603
seq2: B6Ng01-279I23.b_44_1189 (reverse)

seq1  ATTCTGTCACTTGATCTTGTTGCTTTGGATTAATGCCTTGG-ATTAATGT  49
      |||||||||||||||||||||||  |||||||||||| ||| ||||||| 
seq2  ATTCTGTCACTTGATCTTGTTGC-CTGGATTAATGCCCTGGAATTAATG-  48

seq1  TTACCATTTGA-TCCA-GTGATT-CTATTGGACTGATGTTTGCACTTTCC  96
      ||| ||||||| |||| |||||| ||  |||||||| |||||||| ||||
seq2  TTAACATTTGATTCCAGGTGATTCCTTATGGACTGA-GTTTGCAC-TTCC  96

seq1  AGGCTCAGATTCTGAGGTTCTGTTACCTTAGCCGCTACCTCTGCTGGCTG  146
      |||||||||||||||||| ||| || ||||||||||||||||||||||||
seq2  AGGCTCAGATTCTGAGGTCCTG-TAACTTAGCCGCTACCTCTGCTGGCTG  145

seq1  CCATGTACCAAAAGTGAGCTCTACAGAGTCTGAATTTCCCTCAACTTGAC  196
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  -CATGTACCAAAAGTGAGCTCTACAGAGTCTGAATTTCCCTCAAC-TGAC  193

seq1  TGGTTTGCTTGCATGACAACTCAGAGGATTTTCAGTCACAGCATAGAGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCTTGCATGACAACTCAGAGGATTTTCAGTCACAGCATAGAGGT  243

seq1  CAAATTTTTAATTTGGGAATCTGAGGTCCTGCCCTGGTGTTATTCCTGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTAATTTGGGAATCTGAGGTCCTGCCCTGGTGTTATTCCTGAA  293

seq1  ACAGGATCTGGGATGTGACAGAATGGCCTTGGTATTGATACTATAGATTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCTGGGATGTGACAGAATGGCCTTGGTATTGATACTATAGATTG  343

seq1  TTCCCTTTGAGATCTTTTCTTAGAACCCACCCCCAGAGGTCCTAAGTCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTGAGATCTTTTCTTAGAACCCACCCCCAGAGGTCCTAAGTCTT  393

seq1  GAGGACAATGCCTTGGAGATTTTTCTACAAATCTGGACTCTATTTACATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAATGCCTTGGAGATTTTTCTACAAATCTGGACTCTATTTACATT  443

seq1  TTGCAAATATGATTCAGGATTGCACTCAGGGGAATTTACAAATGGAGGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATATGATTCAGGATTGCACTCAGGGGAATTTACAAATGGAGGTT  493

seq1  TTGGTTCTGGTGTGCATGCAGAAGACTTTTCACACTAAGGACTTGACCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTGGTGTGCATGCAGAAGACTTTTCACACTAAGGACTTGACCCT  543

seq1  GGAGTGCATTCAGTAGAATTTTCATCTTGCAAATATGATTCAGTGTTGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCATTCAGTAGAATTTTCATCTTGCAAATATGATTCAGTGTTGCT  593

seq1  CCCAATTGAATCTAAACTTGCTATTTTGATCCTGAAAAGCATGAGGAAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGAATCTAAACTTGCTATTTTGATCCTGAAAAGCATGAGGAAGT  643

seq1  ATTCGTTCCATGCAAATGTATTCCTGGATTGCACTCAAAACTTATACAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCCATGCAAATGTATTCCTGGATTGCACTCAAAACTTATACAAT  693

seq1  GAACATTTGTCTCTGGAATACATGTAGAGGAATTTGTATCTTGAAAATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGTCTCTGGAATACATGTAGAGGAATTTGTATCTTGAAAATAT  743

seq1  GGCCCAGATATATACTCACTGGAATTTACCTATTGAGAATTTAAATTGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGATATATACTCACTGGAATTTACCTATTGAGAATTTAAATTGGG  793

seq1  AGTACATGCAGGCATCACATCTTCCAAGTGTAACCTAGGACAGAACACCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGCAGGCATCACATCTTCCAAGTGTAACCTAGGACAGAACACCT  843

seq1  TAGATTTTATACCCTGAAGTTCTGGACTAGGGTGCAAGTCAGATAATTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTATACCCTGAAGTTCTGGACTAGGGTGCAAGTCAGATAATTCT  893

seq1  ACATCTTGTATCTCGGTGTTGGGTGCCATAACATTTTTACTGTGACTCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGTATCTCGGTGTTGGGTGCCATAACATTTTTACTGTGACTCCA  943

seq1  GTCACAAGATTTCCTAAATTGCAATCTAGGTTTATGCTTCAATTCCTGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGATTTCCTAAATTGCAATCTAGGTTTATGCTTCAATTCCTGAG  993

seq1  GTGACTCTTCTAGCAGCTTAACCTCTGTGCTCACCACAGAAGGTTTTATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTTCTAGCAGCTTAACCTCTGTGCTCACCACAGAAGGTTTTATC  1043

seq1  TCCTGCAACTGTGGCCCAGAGTTGAACCCTAAAGACAGTGTACCTGTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAACTGTGGCCCAGAGTTGAACCCTAAAGACAGTGTACCTGTTTC  1093

seq1  CAGCCCAACTCAGAGGACTTCACATCTGGCAACTGTTGCTCTGAGTTGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAACTCAGAGGACTTCACATCTGGCAACTGTTGCTCTGAGTTGAA  1143

seq1  TTC  1149
      |||
seq2  TTC  1146

seq1: chr12_18142080_18143058
seq2: B6Ng01-279I23.g_63_1046

seq1  GAATTCCCATTCGGCTTGTACCATGGTCAACTCCCTATGCAAAACACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTCGGCTTGTACCATGGTCAACTCCCTATGCAAAACACCTG  50

seq1  CCTTTACCCCTGGCTTCTTAAGGCTGTGAGAGGGCGCACACACAGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCCCTGGCTTCTTAAGGCTGTGAGAGGGCGCACACACAGAACAT  100

seq1  GGTCCCTATCATTGCATCCCCAACTAACTGTCCCTACATCTTTTCCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTATCATTGCATCCCCAACTAACTGTCCCTACATCTTTTCCCTCT  150

seq1  AAAGTGCCCTGGAGGATTTCACTGTCCTGTAGGGGGCGAGCTACCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCCTGGAGGATTTCACTGTCCTGTAGGGGGCGAGCTACCAACAA  200

seq1  TGTCTTCACTGGCCCTTCACTGAAGTTCTGGTGGAGAATTCAGGGGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCACTGGCCCTTCACTGAAGTTCTGGTGGAGAATTCAGGGGGTTC  250

seq1  TGAGGCTAATGGTGGGATTGGGGAGCAAAAGGGTGGGTTCCTCTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTAATGGTGGGATTGGGGAGCAAAAGGGTGGGTTCCTCTCCAGCC  300

seq1  GGGAAGCCAGTATCCCCGGTTCCACTCCACGCCCTCTGCGTAATGTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCAGTATCCCCGGTTCCACTCCACGCCCTCTGCGTAATGTTGCT  350

seq1  AGAGGTCATGGCGGGTGCTGGGTGGGAGCCGGGCACCGCAGCTCGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCATGGCGGGTGCTGGGTGGGAGCCGGGCACCGCAGCTCGGGAGA  400

seq1  GGGCGCGCCCTCGAACCCCAGCACCTCCCGAAGGCAGACTCAAGGCGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCGCCCTCGAACCCCAGCACCTCCCGAAGGCAGACTCAAGGCGGCG  450

seq1  TCCCACAGGCACTGACAGGTCCGGAGCGCACATCGCCCTTTTTTCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGGCACTGACAGGTCCGGAGCGCACATCGCCCTTTTTTCTGTGG  500

seq1  CCTCCGCTTCCTGGCAGCGCGGTGGCGGCAAGTGCCCCGATTGGCGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCTTCCTGGCAGCGCGGTGGCGGCAAGTGCCCCGATTGGCGGCCA  550

seq1  GACCTTTGCCCCGCCCCGCCCCGCCCCTCCCTGGCGGACACCGCTCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGCCCCGCCCCGCCCCGCCCCTCCCTGGCGGACACCGCTCTTCC  600

seq1  CCGCCCCCCCCCCGTCCCGCCTCTCTCCGCGGGAGGCCTTCGGGCCAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCCCCCCCGTCCCGCCTCTCTCCGCGGGAGGCCTTCGGGCCAGCG  650

seq1  GCTTGGTGGCGCGCAGTTTACCCTGGCTGTGCGCGCCCGCAGAGAACGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGGCGCGCAGTTTACCCTGGCTGTGCGCGCCCGCAGAGAACGGG  700

seq1  GCATCGGCGTCTCCGGGAGCACAGCGGGCAGAGCTGCGGACTGCACGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGGCGTCTCCGGGAGCACAGCGGGCAGAGCTGCGGACTGCACGCGC  750

seq1  CCCTGCTGCCACCGGCCGTCCCGCGGTGGCTCCCGCGCCCTGCGGCGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCCACCGGCCGTCCCGCGGTGGCTCCCGCGCCCTGCGGCGACT  800

seq1  TCCGAGCCCGCGCTCCCC-TTTGTCCGAATCCCCGAGCGGCGGCTGAGGC  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCGAGCCCGCGCTCCCCTTTTGTCCGAATCCCCGAGCGGCGGCTGAGGC  850

seq1  TGGGTCCGAG-CCCGCGTCCT-GGGCGACTGAGGCGGCGACAGTCCGCGC  897
      |||||||||| |||||||||| ||||||||||||||||||  || |||||
seq2  TGGGTCCGAGCCCCGCGTCCTGGGGCGACTGAGGCGGCGAACGTTCGCGC  900

seq1  CCCGGCGCCCTGGCGATGCC-GGACTCGATCTCCGTGTCGGAATTCGT-G  945
      ||||||||||| | |||||| ||||||||||||||||||||||||||| |
seq2  CCCGGCGCCCTTGAGATGCCGGGACTCGATCTCCGTGTCGGAATTCGTGG  950

seq1  GCTGAGACCCTTGAGGACTACAAGGCG-CCCACGG  979
      ||||||||| |  |||||||| ||||| |||||||
seq2  GCTGAGACCTTGAAGGACTAC-AGGCGCCCCACGG  984