BAC Information

Click to search

BAC

Clone NameB6Ng01-279K09
Chromosome7 (Build37)12 (Build37)
Map Location 78,799,941 - 78,800,11683,100,112 - 83,101,268
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665535, Mctp2, LOC100042873, LOC100042880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279K09.bB6Ng01-279K09.g
ACCGA079577GA079578
length6861,156
definitionB6Ng01-279K09.b B6Ng01-279K09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,799,941 - 78,800,116)(83,100,112 - 83,101,268)
sequence
gaattccaaagaagccaggcggtggtggcatacgcctttaatcccagcat
tcaggaggcagaggcaggcagatttctgagtttgaggccagcctggtcta
caaagtgagttccaggacagccagggctatacagagaaaccctatcttga
aaacacacacacacacacacacacacacacacacacacacaaacaaacaa
aaaatccaaacaaaaaaagaatttcaaagaattccaaagaatttgctggg
tgtagtgacccctgcctattgtcctagcatcagaaaactaaaagcatgag
gattttgagttcaagtttaacctgaggtatatagtgagtcactatttgaa
aaaaaaggaaattaaactatagatagaaagatagatagatagatagatag
atgcatgcataaatacattcatagattcattgatagatggtagatagata
gacagatagatagatgataggtagatagatggtagatagatagatagata
gatagacagacgatagataggtagatagctagatggtagataggtagata
gataggtaggtaggtagatagatagatagatggatggataggtagataga
tagatagatagatagatagatagatagatagatgatagatagtagttagg
taatagatagtggttaggtgatagatgactgtggtg

gaattctctgggtaccgaatgtcaagcgatgtgcatgtaaattcttacag
aggaaaccaaagctctcactgagaactctttctggattcgtttattttat
ttttctatctcctctcaaaatataaaatacagcctcatatttgagcaaga
gtcacactgcctctttacactctacatagtttcctaccagcatcctcttg
cctcagcctagaacctaccctatgagggtgtcctgcatcagtcatcaaat
tctgggtctctagtgtttgcccagtgtctaaaatcatctcttttttaggt
aaatttaagtcatcctttgttctgaatatatgacttgaaaaaaatagtaa
tctgaagttgtgtttcctagctactgaggtataaactgttgtctggtata
ttcattgctttcatatttaaagtgttttttcattagtataagcaaattta
tttctgtatttttgcctttaagtccttagtattctttctcatctctcttt
ggtagctacataaagttactttgagcacgggcccactgaacttttccacg
ggagatgatccatctctcctagaggcgttttcttaactgcaaggtgaacg
gagactatcagttaaagctttaagtggcgcatgcctgttgctggcccacc
cttgaactttgtgtttcaggtttagatggctgctgagatttactgagggg
gcaaaggagatatagtagatactgcagtgtatttaggtgataagaatttt
atacataggcatttttttaaagtatttgaagaccaccagccgttttcttg
gtttctcttttcaaattaatctagttgatgaacacccaggcagcctcatt
tggaagttgtcacctgttcacaagctctgatcagaaaggaattgcttatc
aaacaggtctggaaagatctaacccttgcttgaaggcagaggtctctctt
ctgtggtgcatcacctcccagagtcatctgtccagagctgtatggtgaga
atttctctggtcttttctgaattggggcagaagtcatctgtaagctgagc
atccggcgtgccatttttgtagaactcgcatcgagggtgtccggcctgaa
gcgaatggttcacacagctccactcagctgtacgttcactcttatactaa
tatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78799941_78800116
seq2: B6Ng01-279K09.b_70_270

seq1  TGGTGGCACACACCTTTTATCCCAGCACTCAGGAGGCAGAGGCAGGCAGA  50
      |||||||| || ||||| ||||||||| ||||||||||||||||||||||
seq2  TGGTGGCATACGCCTTTAATCCCAGCATTCAGGAGGCAGAGGCAGGCAGA  50

seq1  TTTCTGAGTTCGAGACCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC  100
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC  100

seq1  AGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAC----------  140
      ||||||||||||||||||||| |||  ||||  || | ||          
seq2  AGGGCTATACAGAGAAACCCTATCTTGAAAACACACACACACACACACAC  150

seq1  -------------CAAACAAACAAA-AAACCAACCAAAC-AAAAAAGAAT  175
                   || ||||||||| |||  | |||||| ||||||||||
seq2  ACACACACACACACACACAAACAAACAAAAAATCCAAACAAAAAAAGAAT  200

seq1  T  176
      |
seq2  T  201


seq1: chr12_83100112_83101268
seq2: B6Ng01-279K09.g_62_1217

seq1  GAATTCTCTGGGTACCGAATGTCAAGCGATGTGCATGTAAATTCTTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGTACCGAATGTCAAGCGATGTGCATGTAAATTCTTACAG  50

seq1  AGGAAACCAAAGCTCTCACTGAGAACTCTTTCTGGATTCGTTTATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCAAAGCTCTCACTGAGAACTCTTTCTGGATTCGTTTATTTTAT  100

seq1  TTTTCTATCTCCTCTCAAAATATAAAATACAGCCTCATATTTGAGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATCTCCTCTCAAAATATAAAATACAGCCTCATATTTGAGCAAGA  150

seq1  GTCACACTGCCTCTTTACACTCTACATAGTTTCCTACCAGCATCCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTGCCTCTTTACACTCTACATAGTTTCCTACCAGCATCCTCTTG  200

seq1  CCTCAGCCTAGAACCTACCCTATGAGGGTGTCCTGCATCAGTCATCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTAGAACCTACCCTATGAGGGTGTCCTGCATCAGTCATCAAAT  250

seq1  TCTGGGTCTCTAGTGTTTGCCCAGTGTCTAAAATCATCTCTTTTTTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCTCTAGTGTTTGCCCAGTGTCTAAAATCATCTCTTTTTTAGGT  300

seq1  AAATTTAAGTCATCCTTTGTTCTGAATATATGACTTGAAAAAAATAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGTCATCCTTTGTTCTGAATATATGACTTGAAAAAAATAGTAA  350

seq1  TCTGAAGTTGTGTTTCCTAGCTACTGAGGTATAAACTGTTGTCTGGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTTGTGTTTCCTAGCTACTGAGGTATAAACTGTTGTCTGGTATA  400

seq1  TTCATTGCTTTCATATTTAAAGTGTTTTTTCATTAGTATAAGCAAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTTTCATATTTAAAGTGTTTTTTCATTAGTATAAGCAAATTTA  450

seq1  TTTCTGTATTTTTGCCTTTAAGTCCTTAGTATTCTTTCTCATCTCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATTTTTGCCTTTAAGTCCTTAGTATTCTTTCTCATCTCTCTTT  500

seq1  GGTAGCTACATAAAGTTACTTTGAGCACGGGCCCACTGAACTTTTCCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTACATAAAGTTACTTTGAGCACGGGCCCACTGAACTTTTCCACG  550

seq1  GGAGATGATCCATCTCTCCTAGAGGCGTTTTCTTAACTGCAAGGTGAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGATCCATCTCTCCTAGAGGCGTTTTCTTAACTGCAAGGTGAACG  600

seq1  GAGACTATCAGTTAAAGCTTTAAGTGGCGCATGCCTGTTGCTGGCCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATCAGTTAAAGCTTTAAGTGGCGCATGCCTGTTGCTGGCCCACC  650

seq1  CTTGAACTTTGTGTTTCAGGTTTAGATGGCTGCTGAGATTTACTGAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTTGTGTTTCAGGTTTAGATGGCTGCTGAGATTTACTGAGGGG  700

seq1  GCAAAGGAGATATAGTAGATACTGCAGTGTATTTAGGTGATAAGAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAGATATAGTAGATACTGCAGTGTATTTAGGTGATAAGAATTTT  750

seq1  ATACATAGGCATTTTTTTAAAGTATTTGAAGACCACCAGCCGTTTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGGCATTTTTTTAAAGTATTTGAAGACCACCAGCCGTTTTCTTG  800

seq1  GTTTCTCTTTTCAAATTAATCTAGTTGATGAACACCCAGGCAGCCTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTTTCAAATTAATCTAGTTGATGAACACCCAGGCAGCCTCATT  850

seq1  TGGAAGTTGTCACCTGTTCACAAGCTCTGATCAGAAAGGAATTGCTTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTGTCACCTGTTCACAAGCTCTGATCAGAAAGGAATTGCTTATC  900

seq1  AAACAGGTCTGGAAAGATCTAA-CCTTGCTTGAAGGCAGAGGTCTCTCTT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAACAGGTCTGGAAAGATCTAACCCTTGCTTGAAGGCAGAGGTCTCTCTT  950

seq1  CTGTGGTGCATCACCTCCCAGAGTCATCTGTCCAGAGCTGTATGGTGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGCATCACCTCCCAGAGTCATCTGTCCAGAGCTGTATGGTGAGA  1000

seq1  ATTTCTCTGGTC-TTTCTGAATTGGGGCAGAAGTTCATCTGTAAGCTGAG  1048
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  ATTTCTCTGGTCTTTTCTGAATTGGGGCAGAAG-TCATCTGTAAGCTGAG  1049

seq1  CATCCCGGCGTGCCA-TTTTGTAG-ACTCGGCATCGA-GGTGTCCGGGGC  1095
      ||| ||||||||||| |||||||| |||| ||||||| |||||||  |||
seq2  CAT-CCGGCGTGCCATTTTTGTAGAACTC-GCATCGAGGGTGTCC--GGC  1095

seq1  CTGAAGCAGATGG-TCACACAGGGTTCCACTCAGCTGTACG-TCACTCTT  1143
      |||||||  |||| |||||||  | |||||||||||||||| ||||||||
seq2  CTGAAGCGAATGGTTCACACA--GCTCCACTCAGCTGTACGTTCACTCTT  1143

seq1  ATACCTATTATATA  1157
      ||| ||| ||||||
seq2  ATA-CTAATATATA  1156


| Home | SequenceCutter | Blast | Download |