BAC Information

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BAC

Clone NameB6Ng01-280D03
Chromosome12 (Build37)
Map Location 95,352,755 - 95,517,990
singlet/doubletdoublet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280D03.bB6Ng01-280D03.g
ACCGA079982GA079983
length1,1621,094
definitionB6Ng01-280D03.b B6Ng01-280D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,352,755 - 95,353,927)(95,516,886 - 95,517,990)
sequence
gaattctaaggatccaagttcagtcccctacttgtgaggcaagtatatta
accactgaatcttctcatcagctccatcaatctatctatacatcgttttg
ccttctgtattttgccatagtggtaaaaactgaccaagataccagatgag
ggaatgtccaaggagggatacacttatattttgcttgttgttaagagaga
gtagaatagatgatagatgtagcaagctcaatttggaccacatgtttgtg
gttttacttacagaagaaaaaatatggtaggtatggagaattatactaga
tggaggtgaagctaggagggagaatgggacaggaaagagtttgcagattg
attggcaggaaatgaaactcttgccttgcaatttccagcttctgcaggag
gcaagaacaatgaagtccttgcaaataatgcaggatgtggttaggtcaag
gatttgcagagcacagagcaacttagaaaacacaaaataactatggtaaa
gatttttttaaaaaaaaatgcaactcagaaacacatagttactgctgcca
aaagtcttttattctgcaagaatgaaaattaacactgatctctcattcta
tgtatgaagtaagtgccttagcttcagaatctttgaaggataaattacca
gaatgccaagggagctgatgaaaattgctcaggccaagaatttggaacta
catgaatgaaatatctacctgtctttgtatctatgtttatattgccttgt
agtagagcaatttgttggttaatttataaataatcatcaatttatgggta
tggcaaaaacacatattttttacttttagaaatgcataaacttgggaaaa
ttgcctggaaagtaaaaactagtgtaaagaaataataaagggatggggag
atgtgtacattgctgagagatagtaaataacagtaaggaaaaaatgtaat
agagtggacaatattgtttcataatagtaaaacacttcagaaatgagatg
accacaatgtgttgtctttttctgttcatacattattttctttaatcact
gctattaatagataaattggttttcacactccttgacaatgcatttaaaa
ttttggttcttactctgattatatgggagatactttcaattaaattgatt
aaactaatggaa

gaattctcagccataaaacggacttccgtatcacacacctattccacagt
gttaccaaaaatggggaggaaatgtaagaggtcagaaagatgaggatgaa
acagtgtcttctcacagaaccatgacaaccatgaactcagagcagccatg
gtttcctgtatcagtcctactcaagatcaatccagcagatgttttagcat
gagagaggcttaaggatccccaacccttactcagtaactaaagtcagctg
atgtccatgtgggagagtttgtgttttctataaggatatgttccttggta
ggtctgggattagagatgtgaaccaccatgatctgttttttcttttgttt
tgttttgttttgttttgttttgttttgttttgtagtacttactatataac
tgtatagtaaacaaattttataaacctgataataaaaaaataaacaaaat
gtctcaatttctatacagaaattacaagaaaggttgtaaatctatatcaa
attttatcattattttaaaacattagttcagcagagtaacaactcgggat
caagctatatttttttcttaatataataattattataaataagttaaatt
ttatatagaattctgtatcatttttcttccaccaaaaagatggagtttat
cagttatttctagtggtcccaaggtaagaaccttcattatcatcatcttc
aaatgcttccaatatctattagattcaagtatcaaaaatataataatgac
aattcttttttttttttttttttggtttttttgagacagggtttctctgt
gtagcccctggctgtcctggaactcactctgtagaccaggctggcctcga
attcagaaatccacctgcctctgcctcctgagtgctggaattaaaggcat
gcgccaccacgcctggctaataatgaccattcttaagacattctgttacc
ttatgatgaggtgggtatactctagatagccactagatactctagaatct
ttcacgtctctctctctgtcttcctccacttgctcttctgttctctctac
ttcttctgctcttcttctcatgcgttctttcttcccttctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_95352755_95353927
seq2: B6Ng01-280D03.b_44_1205

seq1  GAATTCTAAGGATCCAAGTTCAGTCCCCTACTTGTGAGGCAAGTATATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGATCCAAGTTCAGTCCCCTACTTGTGAGGCAAGTATATTA  50

seq1  ACCACTGAATCTTCTCATCAGCTCCATCAATCTATCTATACATCGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAATCTTCTCATCAGCTCCATCAATCTATCTATACATCGTTTTG  100

seq1  CCTTCTGTATTTTGCCATAGTGGTAAAAACTGACCAAGATACCAGATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTATTTTGCCATAGTGGTAAAAACTGACCAAGATACCAGATGAG  150

seq1  GGAATGTCCAAGGAGGGATACACTTATATTTTGCTTGTTGTTAAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCCAAGGAGGGATACACTTATATTTTGCTTGTTGTTAAGAGAGA  200

seq1  GTAGAATAGATGATAGATGTAGCAAGCTCAATTTGGACCACATGTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAGATGATAGATGTAGCAAGCTCAATTTGGACCACATGTTTGTG  250

seq1  GTTTTACTTACAGAAGAAAAAATATGGTAGGTATGGAGAATTATACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTACAGAAGAAAAAATATGGTAGGTATGGAGAATTATACTAGA  300

seq1  TGGAGGTGAAGCTAGGAGGGAGAATGGGACAGGAAAGAGTTTGCAGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGAAGCTAGGAGGGAGAATGGGACAGGAAAGAGTTTGCAGATTG  350

seq1  ATTGGCAGGAAATGAAACTCTTGCCTTGCAATTTCCAGCTTCTGCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGGAAATGAAACTCTTGCCTTGCAATTTCCAGCTTCTGCAGGAG  400

seq1  GCAAGAACAATGAAGTCCTTGCAAATAATGCAGGATGTGGTTAGGTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACAATGAAGTCCTTGCAAATAATGCAGGATGTGGTTAGGTCAAG  450

seq1  GATTTGCAGAGCACAGAGCAACTTAGAAAACACAAAATAACTATGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCAGAGCACAGAGCAACTTAGAAAACACAAAATAACTATGGTAAA  500

seq1  GATTTTTTTAAAAAAAAATGCAACTCAGAAACACATAGTTACTGCTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTAAAAAAAAATGCAACTCAGAAACACATAGTTACTGCTGCCA  550

seq1  AAAGTCTTTTATTCTGCAAGAATGAAAATTAACACTGATCTCTCATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTTTATTCTGCAAGAATGAAAATTAACACTGATCTCTCATTCTA  600

seq1  TGTATGAAGTAAGTGCCTTAGCTTCAGAATCTTTGAAGGATAAATTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAGTAAGTGCCTTAGCTTCAGAATCTTTGAAGGATAAATTACCA  650

seq1  GAATGCCAAGGGAGCTGATGAAAATTGCTCAGGCCAAGAATTTGGAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAAGGGAGCTGATGAAAATTGCTCAGGCCAAGAATTTGGAACTA  700

seq1  CATGAATGAAATATCTACCTGTCTTTGTATCTATGTTTATATTGCCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGAAATATCTACCTGTCTTTGTATCTATGTTTATATTGCCTTGT  750

seq1  AGTAGAGCAATTTGTTGGTTAATTTATAAATAATCATCAATTTATGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGCAATTTGTTGGTTAATTTATAAATAATCATCAATTTATGGGTA  800

seq1  TGGCAAAAACACATA-TTTTTACTTTTAGAAATGCATAAACTT-GGAAAA  848
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TGGCAAAAACACATATTTTTTACTTTTAGAAATGCATAAACTTGGGAAAA  850

seq1  TTGCCTGG-AAGTAAAAACTAGTGTAAAAGAAATAATAAGGGGATGGGGA  897
      |||||||| |||||||||||||||| ||||||||||||| ||||||||||
seq2  TTGCCTGGAAAGTAAAAACTAGTGT-AAAGAAATAATAAAGGGATGGGGA  899

seq1  GATGTGTACATTGCTGAGAGATAGTAAATAACAGTAAGG-AAAAATGTAA  946
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGTGTACATTGCTGAGAGATAGTAAATAACAGTAAGGAAAAAATGTAA  949

seq1  TAGAGTGGACAATA-TGTTTCATAATAGTAAAACACCTCCAAGAAATGGA  995
      |||||||||||||| ||||||||||||||||||||| ||  |||||| ||
seq2  TAGAGTGGACAATATTGTTTCATAATAGTAAAACACTTC--AGAAAT-GA  996

seq1  GATGACCACAAATGTGTTGTCTTTTCTTGTTTCATACATTTATTTTCTTT  1045
      ||||||||| |||||||||||||||  || |||||||| |||||||||||
seq2  GATGACCAC-AATGTGTTGTCTTTTTCTG-TTCATACA-TTATTTTCTTT  1043

seq1  TAATTCACTGCTATTAATAGATAAATTGGTTTTCACACTCCTTGACAATG  1095
        | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  --AATCACTGCTATTAATAGATAAATTGGTTTTCACACTCCTTGACAATG  1091

seq1  CAATTAAAATTTT-GTTCTTACCTCTAGATTATAATGGAGATACTTTCAA  1144
      || |||||||||| ||||||| |||| |||||||  |||||||||||| |
seq2  CATTTAAAATTTTGGTTCTTA-CTCT-GATTATATGGGAGATACTTTC-A  1138

seq1  ATTAAATATGAATTAAAAACTAAATGGAA  1173
      ||||||| ||| |   ||||| |||||||
seq2  ATTAAAT-TGATT---AAACT-AATGGAA  1162


seq1: chr12_95516886_95517990
seq2: B6Ng01-280D03.g_65_1158 (reverse)

seq1  AGAG-GAAGAGGAAGAAAGAAGGGCATGAGGAGGAAGAGCAGAAGAAGTA  49
      |||| |||| |||||||||||  |||||| || |||||||||||||||||
seq2  AGAGAGAAG-GGAAGAAAGAA-CGCATGA-GAAGAAGAGCAGAAGAAGTA  47

seq1  GAAGAGGAACAGGAGGAGCAAGTGGAGGAAGACAAGGAGGAGGAGGAGGA  99
      | ||| ||||| || |||||||||||||||||||     || |||   ||
seq2  G-AGA-GAACA-GAAGAGCAAGTGGAGGAAGACA-----GA-GAGAGAGA  88

seq1  CGTGGAAAGATTCTAGAGTATCTAGTGGCTATTCTAGAGTATACCCA-CT  148
      ||| ||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CGT-GAAAGATTCTAGAGTATCTAGTGGCTA-TCTAGAGTATACCCACCT  136

seq1  CATCAT-AGGT-ACAGAATGTCTT-AGAATTGTCATTATTAGCCAGGCGT  195
      |||||| |||| |||||||||||| ||||| |||||||||||||||||||
seq2  CATCATAAGGTAACAGAATGTCTTAAGAATGGTCATTATTAGCCAGGCGT  186

seq1  GGTGGCGCATGCCTTTAATTCCAGCACTCAGGAGGCAGAGGCAGGTGGAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCATGCCTTTAATTCCAGCACTCAGGAGGCAGAGGCAGGTGGAT  236

seq1  TTCTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCA  286

seq1  -GGGCTACACAGAGAAACCCTGTCTCAAAAAAACCAAAAAAAAAAAAAAA  344
       ||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  GGGGCTACACAGAGAAACCCTGTCTCAAAAAAACC---AAAAAAAAAAAA  333

seq1  AAAAAAGAATTGTCATTATTATATTTTTGATACTTGAATCTAATAGATAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATTGTCATTATTATATTTTTGATACTTGAATCTAATAGATAT  383

seq1  TGGAAGCATTTGAAGATGATGATAATGAAGGTTCTTACCTTGGGACCACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCATTTGAAGATGATGATAATGAAGGTTCTTACCTTGGGACCACT  433

seq1  AGAAATAACTGATAAACTCCATCTTTTTGGTGGAAGAAAAATGATACAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAACTGATAAACTCCATCTTTTTGGTGGAAGAAAAATGATACAGA  483

seq1  ATTCTATATAAAATTTAACTTATTTATAATAATTATTATATTAAGAAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATAAAATTTAACTTATTTATAATAATTATTATATTAAGAAAAA  533

seq1  AATATAGCTTGATCCCGAGTTGTTACTCTGCTGAACTAATGTTTTAAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGCTTGATCCCGAGTTGTTACTCTGCTGAACTAATGTTTTAAAAT  583

seq1  AATGATAAAATTTGATATAGATTTACAACCTTTCTTGTAATTTCTGTATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAAATTTGATATAGATTTACAACCTTTCTTGTAATTTCTGTATA  633

seq1  GAAATTGAGACATTTTGTTTATTTTTTTATTATCAGGTTTATAAAATTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAGACATTTTGTTTATTTTTTTATTATCAGGTTTATAAAATTTG  683

seq1  TTTACTATACAGTTATATAGTAAGTACTACAAAACAAAACAAAACAAAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATACAGTTATATAGTAAGTACTACAAAACAAAACAAAACAAAAC  733

seq1  AAAACAAAACAAAACAAAAGAAAAAACAGATCATGGTGGTTCACATCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAAGAAAAAACAGATCATGGTGGTTCACATCTCT  783

seq1  AATCCCAGACCTACCAAGGAACATATCCTTATAGAAAACACAAACTCTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGACCTACCAAGGAACATATCCTTATAGAAAACACAAACTCTCC  833

seq1  CACATGGACATCAGCTGACTTTAGTTACTGAGTAAGGGTTGGGGATCCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGACATCAGCTGACTTTAGTTACTGAGTAAGGGTTGGGGATCCTT  883

seq1  AAGCCTCTCTCATGCTAAAACATCTGCTGGATTGATCTTGAGTAGGACTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTCTCATGCTAAAACATCTGCTGGATTGATCTTGAGTAGGACTG  933

seq1  ATACAGGAAACCATGGCTGCTCTGAGTTCATGGTTGTCATGGTTCTGTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAAACCATGGCTGCTCTGAGTTCATGGTTGTCATGGTTCTGTGA  983

seq1  GAAGACACTGTTTCATCCTCATCTTTCTGACCTCTTACATTTCCTCCCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACTGTTTCATCCTCATCTTTCTGACCTCTTACATTTCCTCCCCA  1033

seq1  TTTTTGGTAACACTGTGGAATAGGTGTGTGATACGGAAGTCCGTTTTATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTAACACTGTGGAATAGGTGTGTGATACGGAAGTCCGTTTTATG  1083

seq1  GCTGAGAATTC  1105
      |||||||||||
seq2  GCTGAGAATTC  1094


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