BAC Information

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BAC

Clone NameB6Ng01-280D21
Chromosome12 (Build37)12 (Build37)
Map Location 19,842,012 - 19,842,74925,036,387 - 25,037,231
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594
Downstream geneEG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280D21.bB6Ng01-280D21.g
ACCGA080017GA080018
length1,064944
definitionB6Ng01-280D21.b B6Ng01-280D21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,842,012 - 19,842,749)(25,036,387 - 25,037,231)
sequence
gaattccccatggtgcttggtgcaacttgtcccaaaaccgggaaccttaa
catgtccccaaaccgggaaccttatagtctcaatccaagaagttaaattg
tcccacttacccgggaaacttaccagctagctgccctgactgtgatgagt
tctgaacgtccctataggggccaccatttgtaacttccgattccgaccag
cagaaaggagtgatgacactactttcttctcaaagcagtttattccggaa
cctttcaacatgcatgcatgaatctctctccaggaataatctcttgtgta
tctctccacccccaatcgaaatcccttatataacccctcaaccacgcccc
atcagcccagtccacataacagcagtccattggccagaatcatcactcgt
catatggtctggtcttgcatcatggtgcacctgcgcagttctcacgatgg
tggtggcttattttcaggtgtatgaggaagtcaggggcaagtcataagac
ttggctgcagtcccgggtgccatcttgggactgctgccacatctgctccc
aacagtagctcatcctgacttcaaacttactacatagctgaggacaacct
gcacccttgccttcctgcctcccctgtctagcagtcacaggtgtgagcca
caaagcctggctcttttgcaggtttttttttttttttgcttttttttttt
ggtttttttgttgttttgttttttgagacagggtttatctgtatagccct
ggctgtcctgaaactcactttgtagaccaggctggtctcgaattcagaaa
tccccctgactctgcctccctagtgctgtgattaaacgtcatttgcagtt
ttaagatgtcaaaacttgtacatgtgttcttttaaatttttttctctttc
aatgctttaagaatatttacttatatagtatgttacaaatgttttttttt
attatataatacatctgagttgcctggtactgaagagctgagtagtatgt
cagatccagaaatggagtacgaggtgtgagcaacatgtgtgtagaacgga
ctgaactgggctcc
gaattcagagcttccctgaggtcctctcacagcacccaacagcagagctc
agagcaggacacagagaatcattcaagcctgcacagccacagtgaacttg
gggaaaggcacccggaagatcccaccttcttgtctgactggcaggtctgc
ctgtggagaccttgattggccagtgggtctcacccttcctcaaggttaaa
gtgtgcttcaagtcaagggccacaccttttccagatctcaggtgtggttt
gtactaattagcatttgaacttgtccaccaagaggacactcactactccc
agccctgggggagaactcacggtttctgtggggcattgggctaagcatgg
acagggtagtctccagttgagctgaggtctgaaccccagaatggtgataa
ttcacctatgtgacaaggaaggcattcattccctcatgctcctggaactc
tggcccctgcctaatttaacgccccaccccacccccaccccacagccacc
gcaagagaagcatggctaaaagtcaggtaggcaatgtcccaagcttctga
ccttcaggctaaactcctccccagttacctagcaacagtaaagaccataa
aaagggctgttcagccccacctatctctcttgctccttggatatcttacc
tctcacttctctcactcctctctcctcctttcctttctatttgtcttctc
tctcctctctccctcttactctctttctatctagccttctggggggggct
ctctctctctcttctaccttctctctttctccctgcctttctataataaa
gctctaaaaccatagaatgtctctgttcatcaaggcccactgctcttgga
ggatgagataggctttctcttaatgagccatttctaatctccccatggga
agtctttccttcatgtgctccagtccagatccactgtgctcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_19842012_19842749
seq2: B6Ng01-280D21.b_387_1108

seq1  CACGCCCCATCAGCCCAGTCCACATAACAGCAGTCCATTGGCCAGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCCCATCAGCCCAGTCCACATAACAGCAGTCCATTGGCCAGAATCA  50

seq1  TCACTCGTCATATGGTCTGGTCTTGCATCATGGTGCACCTGCGCAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCGTCATATGGTCTGGTCTTGCATCATGGTGCACCTGCGCAGTTCT  100

seq1  CACGATGGTGGTGGCTTATTTTCAGGTGTATGAGGAAGTCAGGGGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGGTGGTGGCTTATTTTCAGGTGTATGAGGAAGTCAGGGGCAAGT  150

seq1  CATAAGACTTGGCTGCAGTCCCGGGTGCCATCTTGGGACTGCTGCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACTTGGCTGCAGTCCCGGGTGCCATCTTGGGACTGCTGCCACAT  200

seq1  CTGCTCCCAACAGTAGCTCATCCTGACTTCAAACTTACTACATAGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCAACAGTAGCTCATCCTGACTTCAAACTTACTACATAGCTGAG  250

seq1  GACAACCTGCACCCTTGCCTTCCTGCCTCCCCTGTCTAGCAGTCACAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTGCACCCTTGCCTTCCTGCCTCCCCTGTCTAGCAGTCACAGGT  300

seq1  GTGAGCCACAAAGCCTGGCTCTTTTGCAGGTTTTTTTTTTTTTTTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACAAAGCCTGGCTCTTTTGCAGGTTTTTTTTTTTTTTTGCTTT  350

seq1  TTTTTTTTGGTTTTTTTGTTGTTTTGTTTTTTGAGACAGGGTTTATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGTTTTTTTGTTGTTTTGTTTTTTGAGACAGGGTTTATCTGT  400

seq1  ATAGCCCTGGCTGTCCTGAAACTCACTTTGTAGACCAGGCTGGTCTCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGCTGTCCTGAAACTCACTTTGTAGACCAGGCTGGTCTCGAA  450

seq1  TTCAGAAATCCCCCTGACTCTGCCTCCCTAGTGCTGTGATTAAACGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATCCCCCTGACTCTGCCTCCCTAGTGCTGTGATTAAACGTCAT  500

seq1  TTGCAGTTTTAAGATGTCAAAACTTGTACATGTGTTCTTTTAAATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTTAAGATGTCAAAACTTGTACATGTGTTCTTTTAAATTTTTT  550

seq1  TCTCTTTCAATGCTTTAAGAATATTTACTTATATAGTATGTTACAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCAATGCTTTAAGAATATTTACTTATATAGTATGTTACAAATGT  600

seq1  TTTTTTTTATTATATAATACATTCTGAGGTTGCCTGGTACCTGAAGAGGC  650
      ||||||||||||||||||||| ||||| ||||||||||| ||||||||  
seq2  TTTTTTTTATTATATAATACA-TCTGA-GTTGCCTGGTA-CTGAAGAG--  645

seq1  CTGAGTAGTATGTCAGATCCCAGGAAATGGAGTTACAGAAGTTGTGAGCC  700
      ||||||||||||||||||||   ||||||||||   |  || |||||| |
seq2  CTGAGTAGTATGTCAGATCC--AGAAATGGAGT---ACGAGGTGTGAG-C  689

seq1  AACATGTGGGTGTAGGGAACAGGACTGAACTGGGCTCC  738
      |||||||  |||||  |||| |||||||||||||||||
seq2  AACATGT--GTGTA--GAAC-GGACTGAACTGGGCTCC  722

seq1: chr12_25036387_25037231
seq2: B6Ng01-280D21.g_67_866

seq1  GAATTCAGAGCTTCCCTGAGGTCCTCTCACAGCACCCAACAGCAGAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTTCCCTGAGGTCCTCTCACAGCACCCAACAGCAGAGCTC  50

seq1  AGAGCAGGACACAGAGAACCATTCAAGCCTGCACAGCCACAGTGAACTTG  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAGCAGGACACAGAGAATCATTCAAGCCTGCACAGCCACAGTGAACTTG  100

seq1  GGGAAAGGCACCCATAAAATCCCGCCTACTTGTCTGAATGGCAGGTCTGC  150
      |||||||||||||  || ||||| ||| ||||||||| ||||||||||||
seq2  GGGAAAGGCACCCGGAAGATCCCACCTTCTTGTCTGACTGGCAGGTCTGC  150

seq1  CTGTGGAGATCTTGATTGGCCAGTGGGTCTCACCCTTCCTCAAGGTTAAA  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGACCTTGATTGGCCAGTGGGTCTCACCCTTCCTCAAGGTTAAA  200

seq1  GTGTGCTTCAAGTCCAGGGCCAGAGCATTTCCAGATCTCAGGTGTGGTTT  250
      |||||||||||||| ||||||| | | |||||||||||||||||||||||
seq2  GTGTGCTTCAAGTCAAGGGCCACACCTTTTCCAGATCTCAGGTGTGGTTT  250

seq1  GCACTACATTAGCATTTGAGTCAGTCCCCCAAGAGGACTCTCACCCCTCC  300
      | |||| ||||||||||||    |||| |||||||               
seq2  GTACTA-ATTAGCATTTGAACTTGTCCACCAAGAG---------------  284

seq1  CAGCCCTGGGGGAGACTCTCACCCCTCCCAGCCCTGGGGGAGAACTCAAC  350
                   ||| |||||  ||||||||||||||||||||||||  
seq2  -------------GACACTCACTACTCCCAGCCCTGGGGGAGAACTCACG  321

seq1  ATTCAAGTGGGGCATTGGGCTATGCACAGATAGGTTGGTCTCCAGTTGAG  400
       ||   |||||||||||||||| |||  || ||| | |||||||||||||
seq2  GTTTCTGTGGGGCATTGGGCTAAGCATGGACAGGGTAGTCTCCAGTTGAG  371

seq1  CTGAGGTCTGAACCCCGGGAGGGTGATAATTCACTTACTTGACAAGGAAG  450
      |||||||||||||||| | | ||||||||||||| ||  |||||||||||
seq2  CTGAGGTCTGAACCCCAGAATGGTGATAATTCACCTATGTGACAAGGAAG  421

seq1  GCATCAATTCCCTCATGCTTCTGGAACTCAGGCTTTTGCCTAAATTA---  497
      ||||  ||||||||||||| ||||||||| |||   ||||||| |||   
seq2  GCATTCATTCCCTCATGCTCCTGGAACTCTGGCCCCTGCCTAATTTAACG  471

seq1  CCTTCCACCACCCCCACCC--CAGCCACCACAAGAGAAGCCTGGCTAAAA  545
      ||   | ||||||||||||  |||||||| |||||||||| |||||||||
seq2  CCCCACCCCACCCCCACCCCACAGCCACCGCAAGAGAAGCATGGCTAAAA  521

seq1  GTCAGGTAGGCAATGTCCCAAGCTTCTGACCTTCAGGCTAAACTCCTCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCAGGTAGGCAATGTCCCAAGCTTCTGACCTTCAGGCTAAACTCCTCCC  571

seq1  CAGTTACCTAGCAACAGTAAAGACCATAAAAAGGACTGTTCAGCCTCACC  645
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CAGTTACCTAGCAACAGTAAAGACCATAAAAAGGGCTGTTCAGCCCCACC  621

seq1  TATCTCTCTTGATCTGTCTCCTTTGTTCTCTTACCTCTCACTTCTCTCAC  695
      |||||||||||      |||||| | | ||||||||||||||||||||||
seq2  TATCTCTCTTG------CTCCTTGGATATCTTACCTCTCACTTCTCTCAC  665

seq1  TCCTCTCTCCT-CTTTCATTTCTCTTTGTCTTCTCTCCTCTCCTCTCTCC  744
      ||||||||||| ||||| ||||| ||||||||||   |||||||||||||
seq2  TCCTCTCTCCTCCTTTCCTTTCTATTTGTCTTCT---CTCTCCTCTCTCC  712

seq1  CTCTTACTCTCTTTCTATCTAGCCTTCCCCCTTCGAGCCTTCTGGGGGGG  794
      |||||||||||||||||||||||||||             |  |||||| 
seq2  CTCTTACTCTCTTTCTATCTAGCCTTC-------------TGGGGGGGGC  749

seq1  CCTCTCTCTCGCTTCTACCTTCTCTCTTTCTCCCTGCCTTTCTATAATAA  844
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTTCTACCTTCTCTCTTTCTCCCTGCCTTTCTATAATAA  799

seq1  A  845
      |
seq2  A  800