BAC Information

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BAC

Clone NameB6Ng01-280F11
Chromosome12 (Build37)
Map Location 118,867,779 - 119,010,555
singlet/doubletdoublet
Overlap geneRapgef5
Upstream genePtprn2, LOC432713, LOC100042461, A930023M06Rik
Downstream geneCdca7l, Dnahc11, Sp4, LOC100042993, LOC668611, EG668615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280F11.bB6Ng01-280F11.g
ACCGA080093GA080094
length1,1121,128
definitionB6Ng01-280F11.b B6Ng01-280F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,009,439 - 119,010,555)(118,867,779 - 118,868,917)
sequence
gaattccactctggaatcatacagccctgggttccaacgccagcttggtc
tctgaccagccaggttgtttaatgtctctaggcttcagatttgtcatttg
ttagttagtaaggaattttgtgtaatcgatttgaatctctgtaacactcc
tgttctaaagccctaaccctaattcccaagacacagtatgttcccctaca
gggttgttgtaatatgatcctgctggaactcaatgggtccctaactcatt
atgaataacgtcttcatagaaggaaaatttggagatagatgagcacccag
agagtgtgccacttgaagagtaacgttaaatactgaacgctttgaagccc
aaagagacctgtcttctcctagtgccttcagggagagcagagcaccgtca
cccaaaatctcacactccccagcctccagaacccaggcagagccatgctg
ttcaagccccctggcttacggtcctttggcttggtagcctgatccacgcg
aagcattgagtgagattccatgagacaccacacgtaaagcgccagagcct
gatgctgattattggagattgtcaatgaatgtttggttcctgttctttaa
gtgataccgtccacagcctccacagagaggaatgagatctgagaagcagg
agtggcaaaccagcaggtggctctgccctgtgggctgtggcagggtgtgt
ggtagtgatgggacacgccaggcctgcttcccccagctggagcctaagaa
acagtggacagatggctattatttctggtcacctctgatctggacaggaa
ccaaatggaggatccaaaggcaatggtgtgttcagctctgatgaagctct
ccctacctctaaagctctctgtggaggacacagttgccttccatgactgt
cccagcctgtcctggtcataagtatctctgcccattaccaatgctctcat
ctacacaggctgtccaatggccctgtgcgttttgctctggtaaggctcat
taaagcagctgaagtgaatggagataaatgagcccccttttctcaccctc
aaagcccacttagacagaagaacaaatttttgcaggcatgttacgaacct
tctctcacttct
gaattcaaaatatactttacatgctgctactaattgatttattggagaat
ttcttggcttttcagtgtttccctacctgagaagaaacgtttcaatgaga
atgataaacggaattgcaagttcttcatggtacaggcaatagaagtttta
taaatgagaattgtttccagtctttgccttgtaggcatagtcaggagtat
gtacatactctgaccacagttcctaagtggagctggtcagggaaactttt
tactggagttgatttttattggcatgtgaggaaacaattttttttttttt
ttatttttaagaatcttacatttaagcacaatatttacatattctgcccc
ttcttctctccattgcctcctatatctttaccactccttaaattctcagc
ctcttataatataattataattttatctcacacacacacacacacacaca
cacacacacacacacacatcacacttttgtatgtttgtatgaatgaagtt
tataagcacagcctgctgacatcacctggtgttgctggctaggtctgccc
cttgggattggctagtctatccctgtgcttgatcctccctctctctgctc
tctcagtaccattatttacccatagctctttgaggactgaaatcttataa
gaattcctgaatccttttttaggtcttgtttaggcaaccatgttgttgag
atttgctgggtaacttccctcccccagggaagaagacactttctggcagc
agactttctgtcctggccctctggtgcttagaattcttccaccctctctt
ccacactgacacctgagtgcaggaggtcactttgtaaatgtggcatttag
gggaggtgcaccaaagagtctgttgttctctgcattttaaacaattgtgg
ctttcactgtggtttggtgagctttgtcaagggtgagagctacacttatc
tgtgggtataaggtaaggataagtattagaacacagttagaaaattatac
tggtttactaaagtggaagtagtgggatctcttccaagggtcagtgcctg
ctacacagtaatgtctaggttaacggacagacataattctctcctatgag
tgtgactgggctcattcacaagtgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119009439_119010555
seq2: B6Ng01-280F11.b_48_1159 (reverse)

seq1  AGAAGTGAGAAGAAGTTTCGTAACATGCCTGCAAAAATTTG-TCTCCTGT  49
      ||||||||| ||||| ||||||||||||||||||||||||| ||| ||| 
seq2  AGAAGTGAG-AGAAGGTTCGTAACATGCCTGCAAAAATTTGTTCTTCTG-  48

seq1  TCTAAAGTGGGGCTTTGAGGGTGAGAAAGGGGGGCTTCATTTATCTCCAT  99
      ||| |||| ||||||||||||||||||| |||||| ||||||||||||||
seq2  TCT-AAGT-GGGCTTTGAGGGTGAGAAAAGGGGGC-TCATTTATCTCCAT  95

seq1  TCACTTCAGCTGCTTTAATGAGCCTTACCCAGAGCAAAACGCACAGGCCA  149
      ||||||||||||||||||||||||||| ||||||||||||||||||| | 
seq2  TCACTTCAGCTGCTTTAATGAGCCTTA-CCAGAGCAAAACGCACAGGGCC  144

seq1  TTTGGACAGCCTGTGTAGATGAGAGCATTGGTAATGGGCAGAGATACTTA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACAGCCTGTGTAGATGAGAGCATTGGTAATGGGCAGAGATACTTA  194

seq1  TGACCAGGACAGGCTGGGACAGTCATGGAAGGCAACTGTGTCCTCCACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGACAGGCTGGGACAGTCATGGAAGGCAACTGTGTCCTCCACAG  244

seq1  AGAGCTTTAGAGGTAGGGAGAGCTTCATCAGAGCTGAACACACCATTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTAGAGGTAGGGAGAGCTTCATCAGAGCTGAACACACCATTGCC  294

seq1  TTTGGATCCTCCATTTGGTTCCTGTCCAGATCAGAGGTGACCAGAAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCCTCCATTTGGTTCCTGTCCAGATCAGAGGTGACCAGAAATAA  344

seq1  TAGCCATCTGTCCACTGTTTCTTAGGCTCCAGCTGGGGGAAGCAGGCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATCTGTCCACTGTTTCTTAGGCTCCAGCTGGGGGAAGCAGGCCTG  394

seq1  GCGTGTCCCATCACTACCACACACCCTGCCACAGCCCACAGGGCAGAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTCCCATCACTACCACACACCCTGCCACAGCCCACAGGGCAGAGCC  444

seq1  ACCTGCTGGTTTGCCACTCCTGCTTCTCAGATCTCATTCCTCTCTGTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGGTTTGCCACTCCTGCTTCTCAGATCTCATTCCTCTCTGTGGA  494

seq1  GGCTGTGGACGGTATCACTTAAAGAACAGGAACCAAACATTCATTGACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGACGGTATCACTTAAAGAACAGGAACCAAACATTCATTGACAA  544

seq1  TCTCCAATAATCAGCATCAGGCTCTGGCGCTTTACGTGTGGTGTCTCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATAATCAGCATCAGGCTCTGGCGCTTTACGTGTGGTGTCTCATG  594

seq1  GAATCTCACTCAATGCTTCGCGTGGATCAGGCTACCAAGCCAAAGGACCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCACTCAATGCTTCGCGTGGATCAGGCTACCAAGCCAAAGGACCG  644

seq1  TAAGCCAGGGGGCTTGAACAGCATGGCTCTGCCTGGGTTCTGGAGGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGGGGGCTTGAACAGCATGGCTCTGCCTGGGTTCTGGAGGCTGG  694

seq1  GGAGTGTGAGATTTTGGGTGACGGTGCTCTGCTCTCCCTGAAGGCACTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGAGATTTTGGGTGACGGTGCTCTGCTCTCCCTGAAGGCACTAG  744

seq1  GAGAAGACAGGTCTCTTTGGGCTTCAAAGCGTTCAGTATTTAACGTTACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAGGTCTCTTTGGGCTTCAAAGCGTTCAGTATTTAACGTTACT  794

seq1  CTTCAAGTGGCACACTCTCTGGGTGCTCATCTATCTCCAAATTTTCCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGGCACACTCTCTGGGTGCTCATCTATCTCCAAATTTTCCTTC  844

seq1  TATGAAGACGTTATTCATAATGAGTTAGGGACCCATTGAGTTCCAGCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGACGTTATTCATAATGAGTTAGGGACCCATTGAGTTCCAGCAGG  894

seq1  ATCATATTACAACAACCCTGTAGGGGAACATACTGTGTCTTGGGAATTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTACAACAACCCTGTAGGGGAACATACTGTGTCTTGGGAATTAG  944

seq1  GGTTAGGGCTTTAGAACAGGAGTGTTACAGAGATTCAAATCGATTACACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGCTTTAGAACAGGAGTGTTACAGAGATTCAAATCGATTACACA  994

seq1  AAATTCCTTACTAACTAACAAATGACAAATCTGAAGCCTAGAGACATTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTACTAACTAACAAATGACAAATCTGAAGCCTAGAGACATTAA  1044

seq1  ACAACCTGGCTGGTCAGAGACCAAGCTGGCGTTGGAACCCAGGGCTGTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGGCTGGTCAGAGACCAAGCTGGCGTTGGAACCCAGGGCTGTAT  1094

seq1  GATTCCAGAGTGGAATTC  1117
      ||||||||||||||||||
seq2  GATTCCAGAGTGGAATTC  1112

seq1: chr12_118867779_118868917
seq2: B6Ng01-280F11.g_67_1194

seq1  GAATTCAAAATATACTTTACATGCTGCTACTAATTGATTTATTGGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATATACTTTACATGCTGCTACTAATTGATTTATTGGAGAAT  50

seq1  TTCTTGGCTTTTCAGTGTTTCCCTACCTGAGAAGAAACGTTTCAATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTTTTCAGTGTTTCCCTACCTGAGAAGAAACGTTTCAATGAGA  100

seq1  ATGATAAACGGAATTGCAAGTTCTTCATGGTACAGGCAATAGAAGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAACGGAATTGCAAGTTCTTCATGGTACAGGCAATAGAAGTTTTA  150

seq1  TAAATGAGAATTGTTTCCAGTCTTTGCCTTGTAGGCATAGTCAGGAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGAATTGTTTCCAGTCTTTGCCTTGTAGGCATAGTCAGGAGTAT  200

seq1  GTACATACTCTGACCACAGTTCCTAAGTGGAGCTGGTCAGGGAAACTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACTCTGACCACAGTTCCTAAGTGGAGCTGGTCAGGGAAACTTTT  250

seq1  TACTGGAGTTGATTTTTATTGGCATGTGAGGAAACAATTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGTTGATTTTTATTGGCATGTGAGGAAACAATTTTTTTTTTTTT  300

seq1  TTATTTTTAAGAATCTTACATTTAAGCACAATATTTACATATTCTGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAGAATCTTACATTTAAGCACAATATTTACATATTCTGCCCC  350

seq1  TTCTTCTCTCCATTGCCTCCTATATCTTTACCACTCCTTAAATTCTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTCCATTGCCTCCTATATCTTTACCACTCCTTAAATTCTCAGC  400

seq1  CTCTTATAATATAATTATAATTTTATCT--CACACACACACACACACACA  448
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTCTTATAATATAATTATAATTTTATCTCACACACACACACACACACACA  450

seq1  CACACACACACACACACATCACACTTTTGTATGTTTGTATGAATGAAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATCACACTTTTGTATGTTTGTATGAATGAAGTT  500

seq1  TATAAGCACAGCCTGCTGACATCACCTGGTGTTGCTGGCTAGGTCTGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCACAGCCTGCTGACATCACCTGGTGTTGCTGGCTAGGTCTGCCC  550

seq1  CTTGGGATTGGCTAGTCTATCCCTGTGCTTGATCCTCCCTCTCTCTGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATTGGCTAGTCTATCCCTGTGCTTGATCCTCCCTCTCTCTGCTC  600

seq1  TCTCAGTACCATTATTTACCCATAGCTCTTTGAGGACTGAAATCTTATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTACCATTATTTACCCATAGCTCTTTGAGGACTGAAATCTTATAA  650

seq1  GAATTCCTGAATCCTTTTTTAGGTCTTGTTTAGGCAACCATGTTGTTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAATCCTTTTTTAGGTCTTGTTTAGGCAACCATGTTGTTGAG  700

seq1  ATTTGCTGGGTAACTTCCCTCCCCCAGGGAAGAAGACACTTTCTGGCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGGGTAACTTCCCTCCCCCAGGGAAGAAGACACTTTCTGGCAGC  750

seq1  AGACTTTCTGTCCTGGCCCTCTGGTGCTTAGAATTCTTCCACCCTCTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCTGTCCTGGCCCTCTGGTGCTTAGAATTCTTCCACCCTCTCTT  800

seq1  CCACACTGACACCTGAGTGCAGGAGGTCACTTTGTAAATGTGGCATTTA-  847
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCACACTGACACCTGAGTGCAGGAGGTCACTTTGTAAATGTGGCATTTAG  850

seq1  GGGAGGTGCACCAAAGAGTCTGTTGTTCTCTGCATTTTAAACAATTGTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGCACCAAAGAGTCTGTTGTTCTCTGCATTTTAAACAATTGTGG  900

seq1  CTTTCACTGTGGTTTTGGTGAGCTTTGTCAAGGGTGAGAGCTACACTTAT  947
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTGTGG-TTTGGTGAGCTTTGTCAAGGGTGAGAGCTACACTTAT  949

seq1  CTGTGGGTATAAGGTAAGGATAAGTATTTAGAACACAGTTAGAAAATTAT  997
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTGGGTATAAGGTAAGGATAAGTA-TTAGAACACAGTTAGAAAATTAT  998

seq1  ACTGGTTTACTAAAGTGGAAGTAGTGGGATCTCTTCC-AGGGTCAGTGGC  1046
      ||||||||||||||||||||||||||||||||||||| ||||||||||  
seq2  ACTGGTTTACTAAAGTGGAAGTAGTGGGATCTCTTCCAAGGGTCAGTG--  1046

seq1  CCTGCTAACCACAGGTTATGGTCTAGGTTTACAGAACCAGACATAAATTC  1096
      |||||||  |||||  ||  ||||||||| || ||  ||||||| |||||
seq2  CCTGCTA--CACAG--TAATGTCTAGGTTAACGGA--CAGACAT-AATTC  1089

seq1  TCTCCTATTGAGTGTGACTTGTGCCTCATTCAACAAGTGCTGG  1139
      ||||||| |||||||||||   | ||||||| |||||||||||
seq2  TCTCCTA-TGAGTGTGACT--GGGCTCATTC-ACAAGTGCTGG  1128