BAC Information

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BAC

Clone NameB6Ng01-281I08
Chromosome12 (Build37)
Map Location 49,427,349 - 49,537,049
singlet/doubletdoublet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281I08.bB6Ng01-281I08.g
ACCGA080976GA080977
length1,0201,111
definitionB6Ng01-281I08.b B6Ng01-281I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,536,406 - 49,537,049)(49,427,349 - 49,428,455)
sequence
gaattcaagaccacccagtaccttcccccgttgaaaatgactttccaaac
ggtactaacagacaaagtgcagagctggccgactaaacaaatgtaaaaac
atagttttagcagtcaaaatgattcagcctaaaagctgccaaaacaatat
taactcttctcagagaaattaccataacaagattagcaattctcctgctc
ccttcccccacaaaattctgacaaagaccaaaaacaaccctgacattgtt
gtgagaattcccctgacattaatatctgtgatattaatagctgctccata
gttcaaaatgtagtactattttgctgaccaaatcataataacccactata
gggacaaacaaagtgaatcactaggccaaagtgttactgagtcactacac
aaaccaacaaatgcctgaaagggttacttgctacaccaatgagaacccag
ttgctcaaatctgccccttacaaagatataaaaagtgtgttctttgtttg
ttctgggtctctcctctggcctgtgagctaagaggggagtccccaacatg
ttggatcaataaaaattctcatgcagtttgcagcgatggtgatctctgtg
gtctttgtaagtgagggtctccaacaccaccaccaaaactgtcctctgac
tgcagtgtgctgggagggaggggagtctaagctagttcaaatagaaataa
agacagtgctgtgagttacatcagatgtgctcctgtctattttgagggct
atctctacacttccctggtactaaagtcctacttatccaaagtcctaaat
ctacagtcctctagaaaacagcatgtccaggactatcagagcaatatcac
atatccccgctatcaatttctttatatttttctattgtatgtgtgtgttt
ctcatgctgtaagaaataacataaccaaggcatctaaattttgagtgcat
tattcctgatgtttagagtctatgatggggagcatgacacatgaagtagg
cctgacattggagacttaca
gaattcaagaagttagattccagagaaccaaataaccttattaaaaatgg
ggtacagaactaaataaagaattctcaactgaggaacacagcaactaaag
aaatgttcaacatccttggtcatcagggaaattcaaatcaaaacaaccct
gagattgcacctcacagagtcagaatggttaagatcagaagctcaggtga
cagcagatactgatgaggctgtgaagaaagaggaacacttctccaattgc
tgtgtggtattacaagctggtacaaatgctctggaaatcagtttggcagc
tcctcagaaaataggacattgtactacctgaggacccagctatacctctc
ctgggtatatacccagaagatgccccaagagtctgtttttcttctaaagt
tacaggaaatttgttctgttttctcattccataatctgagttttaatgag
tctaacatatgctggtaatacgtttcatagagacagttaatatctagaat
atataaagaattataaaaattcaataccaaaacaacataaagaaaagaaa
attacaaatcagctaatatgctaacaaaatttggatatttctcaaaagaa
gaaacataaatgctcaataaatatttttcaaatcgtcaacatccctagct
ctcagaaggatgcaaattcaatcttttttcaggttgcaccttgccatggt
cagagcagttattattaacaaattagccaagaacaaatgctgcaaagaat
atggggaaaggaaaaacttactctttgctggaggggctgcacactactgc
caccactatggaaccattttgctgattcctcaaaaacttgaaaataaaat
ttccatttgatgaataggactaggactataccaaaagactccatacccta
ctgcagagatgcttgcaaatccatgggttattgttttaatatttgcaatt
atctgaatgtgggaaatatgggcataagcaatagaagccatgagaggaaa
taattggcatgtggaaaagttggagagatattgggggggtgcatagaaaa
tgaatgggaaggaaactatggggctattgagggaaaatacaagggagtag
gagaggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49536406_49537049
seq2: B6Ng01-281I08.b_46_689 (reverse)

seq1  GGACAGTTTTGGTGGTGGTGTTGGAGACCCTCACTTACAAAGACCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTTGGTGGTGGTGTTGGAGACCCTCACTTACAAAGACCACAGA  50

seq1  GATCACCATCGCTGCAAACTGCATGAGAATTTTTATTGATCCAACATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCATCGCTGCAAACTGCATGAGAATTTTTATTGATCCAACATGTT  100

seq1  GGGGACTCCCCTCTTAGCTCACAGGCCAGAGGAGAGACCCAGAACAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTCCCCTCTTAGCTCACAGGCCAGAGGAGAGACCCAGAACAAACA  150

seq1  AAGAACACACTTTTTATATCTTTGTAAGGGGCAGATTTGAGCAACTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACACTTTTTATATCTTTGTAAGGGGCAGATTTGAGCAACTGGGT  200

seq1  TCTCATTGGTGTAGCAAGTAACCCTTTCAGGCATTTGTTGGTTTGTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGGTGTAGCAAGTAACCCTTTCAGGCATTTGTTGGTTTGTGTAG  250

seq1  TGACTCAGTAACACTTTGGCCTAGTGATTCACTTTGTTTGTCCCTATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGTAACACTTTGGCCTAGTGATTCACTTTGTTTGTCCCTATAGT  300

seq1  GGGTTATTATGATTTGGTCAGCAAAATAGTACTACATTTTGAACTATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTATGATTTGGTCAGCAAAATAGTACTACATTTTGAACTATGGA  350

seq1  GCAGCTATTAATATCACAGATATTAATGTCAGGGGAATTCTCACAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATTAATATCACAGATATTAATGTCAGGGGAATTCTCACAACAAT  400

seq1  GTCAGGGTTGTTTTTGGTCTTTGTCAGAATTTTGTGGGGGAAGGGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGTTGTTTTTGGTCTTTGTCAGAATTTTGTGGGGGAAGGGAGCAG  450

seq1  GAGAATTGCTAATCTTGTTATGGTAATTTCTCTGAGAAGAGTTAATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGCTAATCTTGTTATGGTAATTTCTCTGAGAAGAGTTAATATTG  500

seq1  TTTTGGCAGCTTTTAGGCTGAATCATTTTGACTGCTAAAACTATGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAGCTTTTAGGCTGAATCATTTTGACTGCTAAAACTATGTTTTT  550

seq1  ACATTTGTTTAGTCGGCCAGCTCTGCACTTTGTCTGTTAGTACCGTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTTTAGTCGGCCAGCTCTGCACTTTGTCTGTTAGTACCGTTTGG  600

seq1  AAAGTCATTTTCAACGGGGGAAGGTACTGGGTGGTCTTGAATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATTTTCAACGGGGGAAGGTACTGGGTGGTCTTGAATTC  644

seq1: chr12_49427349_49428455
seq2: B6Ng01-281I08.g_69_1179

seq1  GAATTCAAGAAGTTAGATTCCAGAGAACCAAATAACCTTATTAAAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGTTAGATTCCAGAGAACCAAATAACCTTATTAAAAATGG  50

seq1  GGTACAGAACTAAATAAAGAATTCTCAACTGAGGAACACAGCAACTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGAACTAAATAAAGAATTCTCAACTGAGGAACACAGCAACTAAAG  100

seq1  AAATGTTCAACATCCTTGGTCATCAGGGAAATTCAAATCAAAACAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCAACATCCTTGGTCATCAGGGAAATTCAAATCAAAACAACCCT  150

seq1  GAGATTGCACCTCACAGAGTCAGAATGGTTAAGATCAGAAGCTCAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCACCTCACAGAGTCAGAATGGTTAAGATCAGAAGCTCAGGTGA  200

seq1  CAGCAGATACTGATGAGGCTGTGAAGAAAGAGGAACACTTCTCCAATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATACTGATGAGGCTGTGAAGAAAGAGGAACACTTCTCCAATTGC  250

seq1  TGTGTGGTATTACAAGCTGGTACAAATGCTCTGGAAATCAGTTTGGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTATTACAAGCTGGTACAAATGCTCTGGAAATCAGTTTGGCAGC  300

seq1  TCCTCAGAAAATAGGACATTGTACTACCTGAGGACCCAGCTATACCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAAAATAGGACATTGTACTACCTGAGGACCCAGCTATACCTCTC  350

seq1  CTGGGTATATACCCAGAAGATGCCCCAAGAGTCTGTTTTTCTTCTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATATACCCAGAAGATGCCCCAAGAGTCTGTTTTTCTTCTAAAGT  400

seq1  TACAGGAAATTTGTTCTGTTTTCTCATTCCATAATCTGAGTTTTAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAATTTGTTCTGTTTTCTCATTCCATAATCTGAGTTTTAATGAG  450

seq1  TCTAACATATGCTGGTAATACGTTTCATAGAGACAGTTAATATCTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATATGCTGGTAATACGTTTCATAGAGACAGTTAATATCTAGAAT  500

seq1  ATATAAAGAATTATAAAAATTCAATACCAAAACAACATAAAGAAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAATTATAAAAATTCAATACCAAAACAACATAAAGAAAAGAAA  550

seq1  ATTACAAATCAGCTAATATGCTAACAAAATTTGGATATTTCTCAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAATCAGCTAATATGCTAACAAAATTTGGATATTTCTCAAAAGAA  600

seq1  GAAACATAAATGCTCAATAAATATTTTTCAAATCGTCAACATCCCTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATAAATGCTCAATAAATATTTTTCAAATCGTCAACATCCCTAGCT  650

seq1  CTCAGAAGGATGCAAATTCAATCTTTTTTCAGGTTGCACCTTGCCATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGGATGCAAATTCAATCTTTTTTCAGGTTGCACCTTGCCATGGT  700

seq1  CAGAGCAGTTATTATTAACAAATTAGCCAAGAACAAATGCTGCAAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGTTATTATTAACAAATTAGCCAAGAACAAATGCTGCAAAGAAT  750

seq1  ATGGGGAAAGGAAAAACTTACTCTTTGCTGGAGGGGCTGCACACTACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAAGGAAAAACTTACTCTTTGCTGGAGGGGCTGCACACTACTGC  800

seq1  CACCACTATGGAACCATTTTGCTGATTCCTCAAAAACTTGAAAATAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTATGGAACCATTTTGCTGATTCCTCAAAAACTTGAAAATAAAAT  850

seq1  TTCCATTTGATGAATAGGACTAGGACTATACCAAAAGACTCCATACCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTGATGAATAGGACTAGGACTATACCAAAAGACTCCATACCCTA  900

seq1  CTGCAGAGATGCTTGCAAATCCAT-GGTTATTGTTTTAATATTTGCAATT  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGCAGAGATGCTTGCAAATCCATGGGTTATTGTTTTAATATTTGCAATT  950

seq1  ATCTGAATGT-GGAAATAT-GGCATAAGC-ATAGAAGCCATGAGAGGAAA  996
      |||||||||| |||||||| ||||||||| ||||||||||||||||||||
seq2  ATCTGAATGTGGGAAATATGGGCATAAGCAATAGAAGCCATGAGAGGAAA  1000

seq1  TAA-TGGCATGTGGAAAAAGTGGAGAAGATAAT--GGGGGTGCATAGAAA  1043
      ||| ||||||||||||||  ||||| ||||| |  |||||||||||||||
seq2  TAATTGGCATGTGGAAAAGTTGGAG-AGATATTGGGGGGGTGCATAGAAA  1049

seq1  ATGAAATGGAAAGGAAACTATGGGGCTATTGAAGGGAAAATACAAAGGAG  1093
      ||| ||||| ||||||||||||||||||||| ||||||||||||| ||||
seq2  ATG-AATGGGAAGGAAACTATGGGGCTATTG-AGGGAAAATACAAGGGAG  1097

seq1  TAAGAGAAGAGAAA  1107
      || |||| ||||||
seq2  TAGGAGAGGAGAAA  1111