BAC Information

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BAC

Clone NameB6Ng01-281K21
Chromosome12 (Build37)
Map Location 8,391,886 - 8,543,791
singlet/doubletdoublet
Overlap geneBC106175, Rhob, Slc7a15
Upstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
Downstream geneLOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281K21.bB6Ng01-281K21.g
ACCGA081096GA081097
length8581,154
definitionB6Ng01-281K21.b B6Ng01-281K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,391,886 - 8,392,743)(8,542,637 - 8,543,791)
sequence
gaattccattgtttcaatgtgtgtttctccagtaatcagttagtgagctt
gttagtcccttggatttctctctgatttttttcttagtcattctttgggt
gtgtagtacacatgtgatgggccagaggaagacatactgtgttctactct
atcgcatccactgaatttccttgagacagagtctctcactaaggctggag
ctaggttcgtggtcagcaagcccctgaaattctggtgtttcccagcctca
ccctggggctacagaagcacacagcatcataccattcactttctgtagac
tctgggaattttaactcagttcctcatacttactcagaaaatcagtttac
ccactgaactgtctccccacccctcctttcatctctttaagatgtgtctt
ttcttctccctcctcccccacgacaagcctctaatgtatctgaaagctgg
ggcagcccctcagtcaccttgcctaatgcccacatctgtgcttagctatg
accattggcctctgtgcttcctaccctaagctgggtccccttggtactgt
gtcctccaggaggagcccaattctggggtagacggtgataagtgagttca
gagtgcctcagtcctggtcacaccctgtacgttaggagagaagtgggtgg
gctgcttcctccagtggcctgaagattgggaagcgaggactaagtataga
gtcgtcgtggcttcaaagcctgagctggtcactgtctgtgccttgccggc
acagattgatcatcctcataagagctttgtcttttaaaattattattgcc
attggaaagaagaagacaattgaatgaatgagttttagagatttgtgtgt
gtgtgtgt
gaattcaggaccctcagaatgaaatcagaagacctcattctttgtgtgct
atagtggccagaaacatgtctttgagccaacccagggctctactgttgtc
atggctcattacctgggaaagaggttagatttaaaagtgtctcttgccct
gactacctgtgaggttgggtcatgcatactgggtgctcactgtgccaggg
ccatcccaataaagcccgtgagaacgagaacaccttggctacaggcagac
ttgtgtgagcctaggcagagccacattccacaccctgggtggcaaagcag
tagttgctatacctcttctgtgctcaaggcaactttcctttgaactcctt
tggagtcccagattttcaggctggagggggctgggagaactcacatacaa
gagttgctatcctgcttgctttatgttccctagtttgcaatatagtcctc
ttgggagggtggaccggaccgacacagcagaacagtcaaataagacctcc
tgggagaggagactggagtcccggcacggctctgcagagggcagaaagga
cagagcctgccactgtaccagggtacacagggaaggagacagcatcaaca
ctgaggctgactgccaagagctgagctaggtcgggatggccgccttgttc
tcagtgtccctctccacttttaagaatttctatgagcagagctcagtcct
ggcagaaagctctggaaactgtcctttctttaaggccgctatgctaatca
gaagtggatgttcccaggaggggcaaatactatgtatggcaaagcacact
agtgaggtctttagctttctttctcttctgttttcttttgttaaaaaaaa
aaatcctcttcacatctccctgagccatttccaagcctcagagagagtcc
cagtgacggcccttcttcatcctggaagctttggtgatgccaccactgtt
ccctctgtatgtctactgctgtctgccaacctcttgtcagttcccacaca
tctgtctttctgtgcccatgcatggatcatgaccttcacgtggagaaccc
agagctttccaaaccccaaggtctgccagtaccttgtgcattgcatagtt
ctggagtttgtttctgatgtcctagacgacttactgacttacgttggccc
tctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8391886_8392743
seq2: B6Ng01-281K21.b_47_904

seq1  GAATTCCATTGTTTCAATGTGTGTTTCTCCAGTAATCAGTTAGTGAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTTTCAATGTGTGTTTCTCCAGTAATCAGTTAGTGAGCTT  50

seq1  GTTAGTCCCTTGGATTTCTCTCTGATTTTTTTCTTAGTCATTCTTTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCCCTTGGATTTCTCTCTGATTTTTTTCTTAGTCATTCTTTGGGT  100

seq1  GTGTAGTACACATGTGATGGGCCAGAGGAAGACATACTGTGTTCTACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTACACATGTGATGGGCCAGAGGAAGACATACTGTGTTCTACTCT  150

seq1  ATCGCATCCACTGAATTTCCTTGAGACAGAGTCTCTCACTAAGGCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATCCACTGAATTTCCTTGAGACAGAGTCTCTCACTAAGGCTGGAG  200

seq1  CTAGGTTCGTGGTCAGCAAGCCCCTGAAATTCTGGTGTTTCCCAGCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTCGTGGTCAGCAAGCCCCTGAAATTCTGGTGTTTCCCAGCCTCA  250

seq1  CCCTGGGGCTACAGAAGCACACAGCATCATACCATTCACTTTCTGTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGCTACAGAAGCACACAGCATCATACCATTCACTTTCTGTAGAC  300

seq1  TCTGGGAATTTTAACTCAGTTCCTCATACTTACTCAGAAAATCAGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAATTTTAACTCAGTTCCTCATACTTACTCAGAAAATCAGTTTAC  350

seq1  CCACTGAACTGTCTCCCCACCCCTCCTTTCATCTCTTTAAGATGTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAACTGTCTCCCCACCCCTCCTTTCATCTCTTTAAGATGTGTCTT  400

seq1  TTCTTCTCCCTCCTCCCCCACGACAAGCCTCTAATGTATCTGAAAGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCCTCCTCCCCCACGACAAGCCTCTAATGTATCTGAAAGCTGG  450

seq1  GGCAGCCCCTCAGTCACCTTGCCTAATGCCCACATCTGTGCTTAGCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCCTCAGTCACCTTGCCTAATGCCCACATCTGTGCTTAGCTATG  500

seq1  ACCATTGGCCTCTGTGCTTCCTACCCTAAGCTGGGTCCCCTTGGTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGGCCTCTGTGCTTCCTACCCTAAGCTGGGTCCCCTTGGTACTGT  550

seq1  GTCCTCCAGGAGGAGCCCAATTCTGGGGTAGACGGTGATAAGTGAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCAGGAGGAGCCCAATTCTGGGGTAGACGGTGATAAGTGAGTTCA  600

seq1  GAGTGCCTCAGTCCTGGTCACACCCTGTACGTTAGGAGAGAAGTGGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTCAGTCCTGGTCACACCCTGTACGTTAGGAGAGAAGTGGGTGG  650

seq1  GCTGCTTCCTCCAGTGGCCTGAAGATTGGGAAGCGAGGACTAAGTATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCCTCCAGTGGCCTGAAGATTGGGAAGCGAGGACTAAGTATAGA  700

seq1  GTCGTCGTGGCTTCAAAGCCTGAGCTGGTCACTGTCTGTGCCTTGCCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCGTGGCTTCAAAGCCTGAGCTGGTCACTGTCTGTGCCTTGCCGGC  750

seq1  ACAGATTGATCATCCTCATAAGAGCTTTGTCTTTTAAAATTATTATTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGATCATCCTCATAAGAGCTTTGTCTTTTAAAATTATTATTGCC  800

seq1  ATTGGAAAGAAGAAGACAATTGAATGAATGAGTTTTAGAGATTTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAGAAGAAGACAATTGAATGAATGAGTTTTAGAGATTTGTGTGT  850

seq1  GTGTGTGT  858
      ||||||||
seq2  GTGTGTGT  858

seq1: chr12_8542637_8543791
seq2: B6Ng01-281K21.g_70_1223 (reverse)

seq1  AAGAGGGCAAAGGTTAGTCAGTGAGGTCGTTCTAGGCCTTCAG-AACAAA  49
      |||||||| || || ||||||| | |||| |||||| | |||| ||||||
seq2  AAGAGGGCCAACGTAAGTCAGT-AAGTCG-TCTAGGACATCAGAAACAAA  48

seq1  CT-CAGAACTATGCTATGCACAGGGTACTGGCCAGACCCTGGGGGTTGG-  97
      || ||||||||||| ||||||| |||||||| |||||| ||||| |||| 
seq2  CTCCAGAACTATGCAATGCACAAGGTACTGG-CAGACCTTGGGGTTTGGA  97

seq1  AAGCTCTGTGTTCCTCCACCGTG-AGGTCATGATTCCATGCATGGGCACA  146
      |||||||| ||| ||||| |||| ||||||||| ||||||||||||||||
seq2  AAGCTCTGGGTT-CTCCA-CGTGAAGGTCATGA-TCCATGCATGGGCACA  144

seq1  GAAAGACAGATGTGTGGGAACTGACAAGAGGTTGGCAGACAGCAGTAGAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGATGTGTGGGAACTGACAAGAGGTTGGCAGACAGCAGTAGAC  194

seq1  ATACAGAGGGAACAGTGGTGGCATCACCAAAGCTTCCAGGATGAAG-AGG  245
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATACAGAGGGAACAGTGGTGGCATCACCAAAGCTTCCAGGATGAAGAAGG  244

seq1  GCCGTCACTGGGACTCTCTCTGAGGCTTGGAAATGGCTCAGGGAGATGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCACTGGGACTCTCTCTGAGGCTTGGAAATGGCTCAGGGAGATGTG  294

seq1  AAGAGGATTTTTTTTTTTAACAAAAGAAAACAGAAGAGAAAGAAAGCTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATTTTTTTTTTTAACAAAAGAAAACAGAAGAGAAAGAAAGCTAA  344

seq1  AGACCTCACTAGTGTGCTTTGCCATACATAGTATTTGCCCCTCCTGGGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCACTAGTGTGCTTTGCCATACATAGTATTTGCCCCTCCTGGGAA  394

seq1  CATCCACTTCTGATTAGCATAGCGGCCTTAAAGAAAGGACAGTTTCCAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTTCTGATTAGCATAGCGGCCTTAAAGAAAGGACAGTTTCCAGA  444

seq1  GCTTTCTGCCAGGACTGAGCTCTGCTCATAGAAATTCTTAAAAGTGGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGCCAGGACTGAGCTCTGCTCATAGAAATTCTTAAAAGTGGAGA  494

seq1  GGGACACTGAGAACAAGGCGGCCATCCCGACCTAGCTCAGCTCTTGGCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTGAGAACAAGGCGGCCATCCCGACCTAGCTCAGCTCTTGGCAG  544

seq1  TCAGCCTCAGTGTTGATGCTGTCTCCTTCCCTGTGTACCCTGGTACAGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCAGTGTTGATGCTGTCTCCTTCCCTGTGTACCCTGGTACAGTG  594

seq1  GCAGGCTCTGTCCTTTCTGCCCTCTGCAGAGCCGTGCCGGGACTCCAGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCTGTCCTTTCTGCCCTCTGCAGAGCCGTGCCGGGACTCCAGTC  644

seq1  TCCTCTCCCAGGAGGTCTTATTTGACTGTTCTGCTGTGTCGGTCCGGTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCAGGAGGTCTTATTTGACTGTTCTGCTGTGTCGGTCCGGTCC  694

seq1  ACCCTCCCAAGAGGACTATATTGCAAACTAGGGAACATAAAGCAAGCAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCAAGAGGACTATATTGCAAACTAGGGAACATAAAGCAAGCAGG  744

seq1  ATAGCAACTCTTGTATGTGAGTTCTCCCAGCCCCCTCCAGCCTGAAAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACTCTTGTATGTGAGTTCTCCCAGCCCCCTCCAGCCTGAAAATC  794

seq1  TGGGACTCCAAAGGAGTTCAAAGGAAAGTTGCCTTGAGCACAGAAGAGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCCAAAGGAGTTCAAAGGAAAGTTGCCTTGAGCACAGAAGAGGT  844

seq1  ATAGCAACTACTGCTTTGCCACCCAGGGTGTGGAATGTGGCTCTGCCTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACTACTGCTTTGCCACCCAGGGTGTGGAATGTGGCTCTGCCTAG  894

seq1  GCTCACACAAGTCTGCCTGTAGCCAAGGTGTTCTCGTTCTCACGGGCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACAAGTCTGCCTGTAGCCAAGGTGTTCTCGTTCTCACGGGCTTT  944

seq1  ATTGGGATGGCCCTGGCACAGTGAGCACCCAGTATGCATGACCCAACCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGATGGCCCTGGCACAGTGAGCACCCAGTATGCATGACCCAACCTC  994

seq1  ACAGGTAGTCAGGGCAAGAGACACTTTTAAATCTAACCTCTTTCCCAGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGTCAGGGCAAGAGACACTTTTAAATCTAACCTCTTTCCCAGGT  1044

seq1  AATGAGCCATGACAACAGTAGAGCCCTGGGTTGGCTCAAAGACATGTTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCATGACAACAGTAGAGCCCTGGGTTGGCTCAAAGACATGTTTC  1094

seq1  TGGCCACTATAGCACACAAAGAATGAGGTCTTCTGATTTCATTCTGAGGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTATAGCACACAAAGAATGAGGTCTTCTGATTTCATTCTGAGGG  1144

seq1  TCCTGAATTC  1155
      ||||||||||
seq2  TCCTGAATTC  1154