BAC Information

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BAC

Clone NameB6Ng01-282N12
Chromosome12 (Build37)
Map Location 96,272,579 - 96,436,799
singlet/doubletdoublet
Overlap geneLOC100039603
Upstream geneLOC217786
Downstream geneLOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282N12.bB6Ng01-282N12.g
ACCGA081953GA081954
length1,1201,174
definitionB6Ng01-282N12.b B6Ng01-282N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,272,579 - 96,273,701)(96,435,627 - 96,436,799)
sequence
gaattccagaaagctgctaaagaagattacttttgtttcacacgacttac
cttgatctatgggtttaagacttagctcagtggtaaagtactttcctaac
aaaagcaaggatccagatttgatacccaaaacttgaaaaaaaataagtaa
tttacatataattaaatgcacttgtataaaaatctattcatactccacat
ccaccaccaaaatcactacttctccaaaacagtgtaactctttccaatat
aggattatttatttctctttattgtcacaaaagcaagctctcagaggaga
taaccactcatctgttttctgtctataaatactagctttgtctcttctga
atttttaaatacaaccatccatgatgaaatttgcctctgatcttctattc
aggaaaattatttctagacagagcttcattgctgtttctatccatgttct
ttctatctctatctatctctatctctatctctatctctatcatctctatc
tctatctctatctctatctctatctctatctctatctctatctctatctc
tatctctatctctcttgttttataggaacacacatttttgaataaaatac
ttgctctctacatacctggtgaataatagattatctaagacttgtcaatt
ttctaaaaaaatctgctgggtctttatgtagaaattatctctagatgtat
attttgaaggagaaaatacagagctaaattatgatagtttacatggatac
tttgtgattagctttatttaaaaagccaaattgctatatttgtagatgat
acaataatatgcgtatgctaccttaaaattgcatcaggaaactactacag
ctgataaaactttcctgtaaagtgtttggatattaaataaccaacgaaac
atcagaaaccttcatctacataaatggcaaatggaccgaaaaaaaaaaat
caagtaacaatacaatactgcagaaaatataactatctttagttgctctg
actatgcaaatgaaacacctgtatattaacattaaggtcattgaggagac
cttagaagaatagagatcttgctatttcctcagcatagtaggatatatag
gtaaaattgcattctgtcaa
gaattccattatctaaaaaaaaaaaaaactaatgaatttactaaaagctt
aggtgaaaatgcataaactgcttgcagggaaagaagcgatggaggactta
gggctaagaaagtttcttcaaatcaatttttgttttcgcttttaactctc
cccttacttcttctttgcaataggattatctctaggaagaagaagccata
atggtacagacaagcatattgaattcccatggagcttcattagagtcttt
agtgatacagttacagccctctatacctacttctcccagtattggtttta
aaaacatgacatttatagcattcctgctcatttgattatttccaagtttg
tttccttggtctctactaaagattctttcatttgatctctctataaatat
gatgctaatttgtaaaataaaatactaatttgaacatctaaaacttaatt
caaaaagtgtaccaagtactaattgctaaaaggaaatttaaaagtttgcc
cttttgtttttcatttatgtttaatttacacttgaaatattgaatagggt
aagaattaacaaaattcattttctccagcatcatactaaaatatttaata
cccatcaaaaatgtgggtgtctttattctctcatgttaatattcttattt
aagtaaaaaaaaatgtttattggaattcatggctgacttttacatgtgtt
aatgaaatgatagatagatgctatgaaaactaaccaagcatgctagaatg
ttaacatagaacagtggtttcaatatctatcaccacacataaactaggtc
tgtaagcttgagttttgaatgaacacttgattatttgctattgctgtggt
aaaatttctcacatttctgagattgtaagccacctcttctctgcacatgg
ctcagaattaaaactgcagagctgaaactaagttgtctagaatggtgtac
ttgcccattaatgacgacacaacaaattaccattaactgacagattcaca
aataacagaaagtgcattttcttttcccttttattgttatttatatacat
tcaaatttcgcctccgtctgttcacttcgaagaagttccttacaccattc
gttggccctctgaaaggattgcctcacctcacagccagatgacatcttca
tgtgcagccccttcctttggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96272579_96273701
seq2: B6Ng01-282N12.b_47_1166

seq1  GAATTCCAGAAAGCTGCTAAAGAAGATTACTTTTGTTTCACACGACTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGCTGCTAAAGAAGATTACTTTTGTTTCACACGACTTAC  50

seq1  CTTGATCTATGGGTTTAAGACTTAGCTCAGTGGTAAAGTACTTTCCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTATGGGTTTAAGACTTAGCTCAGTGGTAAAGTACTTTCCTAAC  100

seq1  AAAAGCAAGGATCCAGATTTGATACCCAAAACTTGAAAAAAAATAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGGATCCAGATTTGATACCCAAAACTTGAAAAAAAATAAGTAA  150

seq1  TTTACATATAATTAAATGCACTTGTATAAAAATCTATTCATACTCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATAATTAAATGCACTTGTATAAAAATCTATTCATACTCCACAT  200

seq1  CCACCACCAAAATCACTACTTCTCCAAAACAGTGTAACTCTTTCCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCAAAATCACTACTTCTCCAAAACAGTGTAACTCTTTCCAATAT  250

seq1  AGGATTATTTATTTCTCTTTATTGTCACAAAAGCAAGCTCTCAGAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATTTATTTCTCTTTATTGTCACAAAAGCAAGCTCTCAGAGGAGA  300

seq1  TAACCACTCATCTGTTTTCTGTCTATAAATACTAGCTTTGTCTCTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTCATCTGTTTTCTGTCTATAAATACTAGCTTTGTCTCTTCTGA  350

seq1  ATTTTTAAATACAACCATCCATGATGAAATTTGCCTCTGATCTTCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATACAACCATCCATGATGAAATTTGCCTCTGATCTTCTATTC  400

seq1  AGGAAAATTATTTCTAGACAGAGCTTCATTGCTGTTTCTATCCATGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTATTTCTAGACAGAGCTTCATTGCTGTTTCTATCCATGTTCT  450

seq1  TTCTATCTCTATCTATCTCTATCTCTATCTCTATCTCTATCATCTCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCTATCTATCTCTATCTCTATCTCTATCTCTATCATCTCTATC  500

seq1  TCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTC  550

seq1  TATCTCTATCTCTCTTGTTTTATAGGAACACACATTTTTGAATAAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATCTCTCTTGTTTTATAGGAACACACATTTTTGAATAAAATAC  600

seq1  TTGCTCTCTACATACCTGGTGAATAATAGATTATCTAAGACTTGTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTACATACCTGGTGAATAATAGATTATCTAAGACTTGTCAATT  650

seq1  TTCTAAAAAAATCTGCTGGGTCTTTATGTAGAAATTATCTCTAGATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAAAATCTGCTGGGTCTTTATGTAGAAATTATCTCTAGATGTAT  700

seq1  ATTTTGAAGGAGAAAATACAGAGCTAAATTATGATAGTTTACATGGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAGGAGAAAATACAGAGCTAAATTATGATAGTTTACATGGATAC  750

seq1  TTTGTGATTAGCTTTATTTAAAAAGCCAAATTGCTATATTTGTAGATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATTAGCTTTATTTAAAAAGCCAAATTGCTATATTTGTAGATGAT  800

seq1  ACAATAATATGCGTATGCTACCTTAAAATTGCATCAGGAAACTACTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATATGCGTATGCTACCTTAAAATTGCATCAGGAAACTACTACAG  850

seq1  CTGATAAAACTTTCCTGTAAAGTGTTTGGATATTAAATAACCAACGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAACTTTCCTGTAAAGTGTTTGGATATTAAATAACCAACGAAAC  900

seq1  ATCAGAAACCTTCATCTACATAAATGGCAAATGGACCG-AAAAAAAAAAT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCAGAAACCTTCATCTACATAAATGGCAAATGGACCGAAAAAAAAAAAT  950

seq1  CAAGTAAACAATACAATACTGCAGAAAAATATAAACTATCTTTAGTTGCT  999
      ||||| |||||||||||||||||| ||||||| |||||||||||||||||
seq2  CAAGT-AACAATACAATACTGCAG-AAAATAT-AACTATCTTTAGTTGCT  997

seq1  CTGACTATGCAAATGAAACACCTGTATATTAACATTAA-GTCATTGAAGA  1048
      |||||||||||||||||||||||||||||||||||||| ||||||| || 
seq2  CTGACTATGCAAATGAAACACCTGTATATTAACATTAAGGTCATTG-AGG  1046

seq1  AGACCTTAGAAG-ATAGAGATC-TGCTATT--CTCAGGCATTAGTAGGAT  1094
      |||||||||||| ||||||||| |||||||  |||| ||| |||||||||
seq2  AGACCTTAGAAGAATAGAGATCTTGCTATTTCCTCA-GCA-TAGTAGGAT  1094

seq1  TAATATAGTAAAAATTGCCATCCTGTCAA  1123
        ||||||  ||||||| ||| |||||||
seq2  --ATATAGGTAAAATTG-CATTCTGTCAA  1120

seq1: chr12_96435627_96436799
seq2: B6Ng01-282N12.g_64_1237 (reverse)

seq1  GCCTC--AAGGAAGGGGCTGCAGGGGAGAGGGGTGATCTGGGTTGGTGAG  48
      |||||  |||||||||||||||   || ||  || |||||| |  |||||
seq2  GCCTCCAAAGGAAGGGGCTGCACATGA-AGATGTCATCTGGCT--GTGAG  47

seq1  TGGGGGCCATCCTCTCAGAGG--CAAAGGATGGTGTGAAGAAC-TCTTCG  95
        | ||| ||||| |||||||  ||| | ||||||| | |||| ||||||
seq2  GTGAGGCAATCCTTTCAGAGGGCCAACGAATGGTGTAAGGAACTTCTTCG  97

seq1  AAGTGGGACCAGGAAGGGAGGCGAAATTTGGAATGTATATAAAT-ACAAT  144
      ||||  || |||  | ||||||||||||| |||||||||||||| |||||
seq2  AAGT--GAACAG--ACGGAGGCGAAATTT-GAATGTATATAAATAACAAT  142

seq1  AAAAGGGAAA--GAAATGCACTTTCTGTTATTTGTGAATCTGTCAGTTAA  192
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAAAGAAAATGCACTTTCTGTTATTTGTGAATCTGTCAGTTAA  192

seq1  TGGTAATTTGTTGTGTCGTCATTAATGGGCAAGTACACCATTCTAGACAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTGTTGTGTCGTCATTAATGGGCAAGTACACCATTCTAGACAA  242

seq1  CTTAGTTTCAGCTCTGCAGTTTT-ATTCTGAGCCATGTGCAGAGAAGAGG  291
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTAGTTTCAGCTCTGCAGTTTTAATTCTGAGCCATGTGCAGAGAAGAGG  292

seq1  TGGCTTACAATCTCAGAAATGTGAGAAATTTTACCACAGCAATAGCAAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACAATCTCAGAAATGTGAGAAATTTTACCACAGCAATAGCAAAT  342

seq1  AATCAAGTGTTCATTCAAAACTCAAGCTTACAGACCTAGTTTATGTGTGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTGTTCATTCAAAACTCAAGCTTACAGACCTAGTTTATGTGTGG  392

seq1  TGATAGATATTGAAACCACTGTTCTATGTTAACATTCTAGCATGCTTGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATATTGAAACCACTGTTCTATGTTAACATTCTAGCATGCTTGGT  442

seq1  TAGTTTTCATAGCATCTATCTATCATTTCATTAACACATGTAAAAGTCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCATAGCATCTATCTATCATTTCATTAACACATGTAAAAGTCAG  492

seq1  CCATGAATTCCAATAAACATTTTTTTTTACTTAAATAAGAATATTAACAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATTCCAATAAACATTTTTTTTTACTTAAATAAGAATATTAACAT  542

seq1  GAGAGAATAAAGACACCCACATTTTTGATGGGTATTAAATATTTTAGTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATAAAGACACCCACATTTTTGATGGGTATTAAATATTTTAGTAT  592

seq1  GATGCTGGAGAAAATGAATTTTGTTAATTCTTACCCTATTCAATATTTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGAGAAAATGAATTTTGTTAATTCTTACCCTATTCAATATTTCA  642

seq1  AGTGTAAATTAAACATAAATGAAAAACAAAAGGGCAAACTTTTAAATTTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAATTAAACATAAATGAAAAACAAAAGGGCAAACTTTTAAATTTC  692

seq1  CTTTTAGCAATTAGTACTTGGTACACTTTTTGAATTAAGTTTTAGATGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCAATTAGTACTTGGTACACTTTTTGAATTAAGTTTTAGATGTT  742

seq1  CAAATTAGTATTTTATTTTACAAATTAGCATCATATTTATAGAGAGATCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGTATTTTATTTTACAAATTAGCATCATATTTATAGAGAGATCA  792

seq1  AATGAAAGAATCTTTAGTAGAGACCAAGGAAACAAACTTGGAAATAATCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAATCTTTAGTAGAGACCAAGGAAACAAACTTGGAAATAATCA  842

seq1  AATGAGCAGGAATGCTATAAATGTCATGTTTTTAAAACCAATACTGGGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAGGAATGCTATAAATGTCATGTTTTTAAAACCAATACTGGGAG  892

seq1  AAGTAGGTATAGAGGGCTGTAACTGTATCACTAAAGACTCTAATGAAGCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTATAGAGGGCTGTAACTGTATCACTAAAGACTCTAATGAAGCT  942

seq1  CCATGGGAATTCAATATGCTTGTCTGTACCATTATGGCTTCTTCTTCCTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGAATTCAATATGCTTGTCTGTACCATTATGGCTTCTTCTTCCTA  992

seq1  GAGATAATCCTATTGCAAAGAAGAAGTAAGGGGAGAGTTAAAAGCGAAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATCCTATTGCAAAGAAGAAGTAAGGGGAGAGTTAAAAGCGAAAA  1042

seq1  CAAAAATTGATTTGAAGAAACTTTCTTAGCCCTAAGTCCTCCATCGCTTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTGATTTGAAGAAACTTTCTTAGCCCTAAGTCCTCCATCGCTTC  1092

seq1  TTTCCCTGCAAGCAGTTTATGCATTTTCACCTAAGCTTTTAGTAAATTCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGCAAGCAGTTTATGCATTTTCACCTAAGCTTTTAGTAAATTCA  1142

seq1  TTAGTTTTTTTTTTTTTTAGATAATGGAATTC  1173
      ||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTTTTTTTTTTAGATAATGGAATTC  1174