BAC Information

Click to search

BAC

Clone NameB6Ng01-284D01
Chromosome12 (Build37)
Map Location 98,341,952 - 98,361,150
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284D01.bB6Ng01-284D01.g
ACCGA082956GA082957
length1,0961,111
definitionB6Ng01-284D01.b B6Ng01-284D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,341,952 - 98,343,055)(98,360,104 - 98,361,150)
sequence
gaattcaatttgatgaatgatgtcaagtcactgctactgtgagggccctg
ccatgatagattataacctgaaatggtgatgattttattttctgagtagt
gtatcactgcaacaagaaaggaaactaagacacaaatgagaatgtgatgt
cttaaccatttttctaggtgttatcagacatccttagacatatgatattt
gaagataaattcattcaccaccaagtttatcatatacttcaattttttat
caactttcaatctatgagtgcacactcatcctaaaaaatacttgaaaggg
ttggaggacatattttattagagaacagtctactgtgttcatcaatattg
caatcattcctattctcataaatagagagtttggaaaatggtacttgttt
ttcactgctcagaagacagctaactgaatacttcattgtgtggcagtttt
attttctgccttgaaattatcatgcacgtctaagaagaagaagaaaagtt
tctttacaatacggagttgctgaatacataattattttattgagaaaatt
gagaaaacaagagcggtgattgatgttttttggtgcctttaatcattgac
ctaatttgatgtttatctaagagaaatgtctgcactgagttgaattttat
acaagtagataaagccctgggcagtcacccaagatacttcacatggaaga
ttagcattaacattttacaacaccattaaatacaaagtcgatgaacataa
ccaaaataaagcctacatctgttctgcttagtttttgtcaatgtgaaaga
aactaggctcacctgaagagagggaatcttaactgagaaattgccttcat
ccttcattgtggcaggtttatgaagcttttttttttctttcttaatgatt
gatatgagtgcccagcccactgttgggtgatatatccctaggcacatgag
taggactctttaagaaatttagctgatgagctacattgtctggcctcagt
gagattggaagtgtgcagcctcatagagactaagtgtcagtggggggata
ctcaggggcctctacgctcagagagatggacgagggatgggggaaa

gaattctaggacagccagggctacacagagaaaccccgtctaaacaacaa
catcaacaacaacaaagactatagtgcataaatgtgcatatttgtttcaa
agtttatagcaggtaagatttcctatggtatgttgatgtttcgatagtta
aaggaaaaaaaatattaaaaccaacatttctttacattctgcagtgtgtt
tgttcttcagtgggttacaaaggctcatgaaatgagaactcctgacagtt
tggtttgaaagaaaagggaaaaaatattaaagggataggtgaagtcactg
ggagaacaatgtggagtcgggcagtgggcatttagtcatttccccttctt
ttctcttggaagggtttccagtaaatgagtttgctcgcacacatgttccc
gtgtcatcttacttagaacccaagacaaagaagccaactggttatggcct
gcaagctcgaaggctgtgaattccaatatgccttccttatttagaagttg
tctatcactgatgtttgatgtggtggagaaaattgttctaaccaagactc
tttgtcatttcaaatagtaggtcttctacagttggaaatatgtccataag
cagattcagtggactctttccctaaggaaagcacccatcattccttatga
tacacaacttcagaaagaggagaaagtgttagtgcaaggctcctaacttg
ggaaagttgtactgatctaaatgtagggatgtggctttacaccttaagaa
tgcaatactttcttgtttattgcatgacttaaccttggaatcagccttct
gagagccgagtttcagcattcagcatgagagtaatttctgcctaatttaa
ttaaagtaaaacaacaaaacaaaatgctttcttaagtatttttttcaaca
tattctctgccacaaaaacttaaagtgagtgtgcattatactaattatac
taactcttctggtgtatcaaggagtcataaaatgagagttcttccccgat
ctgcctacttgtaactattattatcagaagaactgtgtcccatttaagct
ctaatgactagtaattaattacatatactgaagccatactatcccttccc
aatgttctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_98341952_98343055
seq2: B6Ng01-284D01.b_47_1142

seq1  GAATTCAATTTGATGAATGATGTCAAGTCACTGCTACTGTGAGGGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTGATGAATGATGTCAAGTCACTGCTACTGTGAGGGCCCTG  50

seq1  CCATGATAGATTATAACCTGAAATGGTGATGATTTTATTTTCTGAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATAGATTATAACCTGAAATGGTGATGATTTTATTTTCTGAGTAGT  100

seq1  GTATCACTGCAACAAGAAAGGAAACTAAGACACAAATGAGAATGTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTGCAACAAGAAAGGAAACTAAGACACAAATGAGAATGTGATGT  150

seq1  CTTAACCATTTTTCTAGGTGTTATCAGACATCCTTAGACATATGATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCATTTTTCTAGGTGTTATCAGACATCCTTAGACATATGATATTT  200

seq1  GAAGATAAATTCATTCACCACCAAGTTTATCATATACTTCAATTTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAATTCATTCACCACCAAGTTTATCATATACTTCAATTTTTTAT  250

seq1  CAACTTTCAATCTATGAGTGCACACTCATCCTAAAAAATACTTGAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAATCTATGAGTGCACACTCATCCTAAAAAATACTTGAAAGGG  300

seq1  TTGGAGGACATATTTTATTAGAGAACAGTCTACTGTGTTCATCAATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGACATATTTTATTAGAGAACAGTCTACTGTGTTCATCAATATTG  350

seq1  CAATCATTCCTATTCTCATAAATAGAGAGTTTGGAAAATGGTACTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTCCTATTCTCATAAATAGAGAGTTTGGAAAATGGTACTTGTTT  400

seq1  TTCACTGCTCAGAAGACAGCTAACTGAATACTTCATTGTGTGGCAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCTCAGAAGACAGCTAACTGAATACTTCATTGTGTGGCAGTTTT  450

seq1  ATTTTCTGCCTTGAAATTATCATGCACGTCTAAGAAGAAGAAGAAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCCTTGAAATTATCATGCACGTCTAAGAAGAAGAAGAAAAGTT  500

seq1  TCTTTACAATACGGAGTTGCTGAATACATAATTATTTTATTGAGAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAATACGGAGTTGCTGAATACATAATTATTTTATTGAGAAAATT  550

seq1  GAGAAAACAAGAGCGGTGATTGATGTTTTTTGGTGCCTTTAATCATTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACAAGAGCGGTGATTGATGTTTTTTGGTGCCTTTAATCATTGAC  600

seq1  CTAATTTGATGTTTATCTAAGAGAAATGTCTGCACTGAGTTGAATTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTGATGTTTATCTAAGAGAAATGTCTGCACTGAGTTGAATTTTAT  650

seq1  ACAAGTAGATAAAGCCCTGGGCAGTCACCCAAGATACTTCACATGGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGATAAAGCCCTGGGCAGTCACCCAAGATACTTCACATGGAAGA  700

seq1  TTAGCATTAACATTTTACAACACCATTAAATACAAAGTCGATGAACATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTAACATTTTACAACACCATTAAATACAAAGTCGATGAACATAA  750

seq1  CCAAAATAAAGCCTACATCTGTTCTGCTTAGTTTTTGTCAATGTGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAAGCCTACATCTGTTCTGCTTAGTTTTTGTCAATGTGAAAGA  800

seq1  AACTAGGCTCACCTGAAGAGAGGGAATCTTAACTGAGAAATTGCCTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCTCACCTGAAGAGAGGGAATCTTAACTGAGAAATTGCCTTCAT  850

seq1  CCTTCATTGTGGCAGGTTTATGAAGC-TTTTTTTTTCTTTCTTAATGATT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTTCATTGTGGCAGGTTTATGAAGCTTTTTTTTTTCTTTCTTAATGATT  900

seq1  GATATGAGTGCCCAGCCCACTGTT-GGTGATAATATCCCTAGGCACATGA  948
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GATATGAGTGCCCAGCCCACTGTTGGGTGAT-ATATCCCTAGGCACATGA  949

seq1  GTAGGACTCTTTAAGAAATTTAGCTGATGAGCTACATTTGTCTGGCCTCA  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTAGGACTCTTTAAGAAATTTAGCTGATGAGCTACA-TTGTCTGGCCTCA  998

seq1  GTGAGATTGGAAGTGTGCAGCCTCATAGAGACTTAAGTGTCAGGTGGGGG  1048
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  GTGAGATTGGAAGTGTGCAGCCTCATAGAGAC-TAAGTGTCA-GTGGGGG  1046

seq1  GATACTCAGGGGGCCCTCTACGCTCAGAGGAGAAGGGGACGGAGGGATGG  1098
      ||||||||||||  |||||||||||||| ||||   |||| |||||||||
seq2  GATACTCAGGGG--CCTCTACGCTCAGA-GAGA--TGGAC-GAGGGATGG  1090

seq1  GGGAAA  1104
      ||||||
seq2  GGGAAA  1096


seq1: chr12_98360104_98361150
seq2: B6Ng01-284D01.g_141_1178 (reverse)

seq1  TTGAG-ACATTTGGGAGAGATAGTATGGCTTTCAGTATATGTAATTAATA  49
      ||||| ||||| || || ||||||||||| ||||||||||||||||||| 
seq2  TTGAGAACATTGGGAAGGGATAGTATGGC-TTCAGTATATGTAATTAAT-  48

seq1  AACTAGTCATTAGAGCTTTAAATGGGACACCAGTTTCTTCTGAT-ATAAT  98
       ||||||||||||||| |||||||||||| ||| |||||||||| |||||
seq2  TACTAGTCATTAGAGC-TTAAATGGGACA-CAG-TTCTTCTGATAATAAT  95

seq1  AGTTTACAAGTTAGGCAGATCGGGGAAGAACTCTTCATTTTTATGACTCT  148
      || ||||||| |||||||||||||||||||||| ||| ||||||||||| 
seq2  AG-TTACAAG-TAGGCAGATCGGGGAAGAACTC-TCA-TTTTATGACTCC  141

seq1  TGAATACACCAGAAGAGTTAGTATAATTAGTATAATGCACACTCACTTTA  198
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACACCAGAAGAGTTAGTATAATTAGTATAATGCACACTCACTTTA  191

seq1  AGTTTTTGTGGCAGAGAATATGTTTGAAAAAAATACTTTAAGAAAGCATT  248
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  AGTTTTTGTGGCAGAGAATATG-TTGAAAAAAATAC-TTAAGAAAGCATT  239

seq1  TTGTTTTGTTTGTTTTAC-TTAATTAAATTAGGCAGAAATTACTCTCATG  297
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TTGTTTTG-TTGTTTTACTTTAATTAAATTAGGCAGAAATTACTCTCATG  288

seq1  CTGAATGCTGAAACTCGGCTCTCAGAAGGCTGATTCCAAGGTTAAGTCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCTGAAACTCGGCTCTCAGAAGGCTGATTCCAAGGTTAAGTCAT  338

seq1  GCAATAAACAAGAAAGTATTGCATTCTTAAGGTGTAAAGCCACATCCCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAACAAGAAAGTATTGCATTCTTAAGGTGTAAAGCCACATCCCTA  388

seq1  CATTTAGATCAGTACAACTTTCCCAAGTTAGGAGCCTTGCACTAACACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGATCAGTACAACTTTCCCAAGTTAGGAGCCTTGCACTAACACTT  438

seq1  TCTCCTCTTTCTGAAGTTGTGTATCATAAGGAATGATGGGTGCTTTCCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTTCTGAAGTTGTGTATCATAAGGAATGATGGGTGCTTTCCTT  488

seq1  AGGGAAAGAGTCCACTGAATCTGCTTATGGACATATTTCCAACTGTAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGAGTCCACTGAATCTGCTTATGGACATATTTCCAACTGTAGAA  538

seq1  GACCTACTATTTGAAATGACAAAGAGTCTTGGTTAGAACAATTTTCTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACTATTTGAAATGACAAAGAGTCTTGGTTAGAACAATTTTCTCCA  588

seq1  CCACATCAAACATCAGTGATAGACAACTTCTAAATAAGGAAGGCATATTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAAACATCAGTGATAGACAACTTCTAAATAAGGAAGGCATATTG  638

seq1  GAATTCACAGCCTTCGAGCTTGCAGGCCATAACCAGTTGGCTTCTTTGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCTTCGAGCTTGCAGGCCATAACCAGTTGGCTTCTTTGTC  688

seq1  TTGGGTTCTAAGTAAGATGACACGGGAACATGTGTGCGAGCAAACTCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCTAAGTAAGATGACACGGGAACATGTGTGCGAGCAAACTCATT  738

seq1  TACTGGAAACCCTTCCAAGAGAAAAGAAGGGGAAATGACTAAATGCCCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAAACCCTTCCAAGAGAAAAGAAGGGGAAATGACTAAATGCCCAC  788

seq1  TGCCCGACTCCACATTGTTCTCCCAGTGACTTCACCTATCCCTTTAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGACTCCACATTGTTCTCCCAGTGACTTCACCTATCCCTTTAATAT  838

seq1  TTTTTCCCTTTTCTTTCAAACCAAACTGTCAGGAGTTCTCATTTCATGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTTTCTTTCAAACCAAACTGTCAGGAGTTCTCATTTCATGAG  888

seq1  CCTTTGTAACCCACTGAAGAACAAACACACTGCAGAATGTAAAGAAATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTAACCCACTGAAGAACAAACACACTGCAGAATGTAAAGAAATGT  938

seq1  TGGTTTTAATATTTTTTTTCCTTTAACTATCGAAACATCAACATACCATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTAATATTTTTTTTCCTTTAACTATCGAAACATCAACATACCATA  988

seq1  GGAAATCTTACCTGCTATAAACTTTGAAACAAATATGCACATTTATGCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTTACCTGCTATAAACTTTGAAACAAATATGCACATTTATGCAC  1038


| Home | SequenceCutter | Blast | Download |