BAC Information

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BAC

Clone NameB6Ng01-284G10
Chromosome12 (Build37)
Map Location 96,250,746 - 96,346,621
singlet/doubletdoublet
Overlap geneLOC100039603
Upstream geneEG633639, LOC217786
Downstream geneLOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284G10.bB6Ng01-284G10.g
ACCGA083112GA083113
length1,0841,155
definitionB6Ng01-284G10.b B6Ng01-284G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,250,746 - 96,251,838)(96,345,474 - 96,346,621)
sequence
gaattcagggtgacactgttttctttcagcactttcctggcaccttttta
ttccttctcttttatgtgctaaacaagaaagaatttcctgataccttcat
ctctgtcttttccatttgatcctgtaggactattatcaagaattcgatat
atctgctttttatagagtttattgaaactgatcactacacatacctattc
ttttcacttagcatgaaaattgctcagctatctttttacaatattttatt
gtatttttttttctcccactctactggccttttcactcttctccacgtac
acatgtttaaactgttgtacccacattctgcttctgttcagtctattcct
tttgtgatgcatgagggtggctttctggaagtattttgaaataactctaa
tcagaagtggataacagaatgtgtaagaagcaggtatcagtgactgtaaa
catcaaacctcacgattcctcaggaccctaggctttgcattctatcgttt
aaaaatagaaagaaattttatcttttgcctgcttcaaggccatcatccca
taaggatattatctcctcttcatttcttctatgagcttactatgcagact
gatcttttcatggggctgcattcatcactctgttccagcaggtgatgaga
cattcccctctttgtgcactacactgttcttaagaacagcttccactaaa
ccagagaggaagtgctttcttccattctgtctatgatttatagagaagag
aattcttaccacagcttgttctcatatttggatacaaattgctaatccac
agaggagatctgtcacttataaagaaatctaaagctggtgttttatttgt
tttgtttttcagtacaggagattgaatttaggcccttagcatgctaacta
agccttcttctactaagctacctttcccagccctctaatcccgatgcttt
ggagaattatgaaaagaaagcccattagccaatatttaattgtttctcta
tgagagggctattttttggttcattgggcaatcccacttatttcataaat
actaaatgaaaatgttacactgcctatttagatg

aatcccagtatcttgtgagccattctcttctcctatcaatgaatttcttt
tcttcaccactttacaaggctcttcctctgtttaaattcattctaagtat
tatcttctgtttagttctctcttcttataaacacaccattcagactgagt
accatgctaataatgtcactttaacttaataatctagttgaagacaaaac
acccaaatatagtcaccacttgagacatttaagacattaaaatgaatttt
caggatacaaaatattgataataaaaaagtctgatagaaccaagataaag
gagtaatactcatatcacatgggtattactctcttaagcttattagttat
aggcaaggttattttgagcaggactgagagggtaggaaggaaaataaata
aatacaaatgaatttatcagtgagtcttcttaggttttctacttgttcaa
tgacaatcaagcatttgcagattgctatttatggaagtccttgcatgata
ctcttttgtgtgattgcagtatactttgagaaccaagtattcaagggcac
agtatgattaagaattgccccacctcccactctcaccctttccactccct
tgttgttagtcttgcttctgcttgtcccataggtcttcttttcttccttg
tattgtgctatgctatttattcagtcattctcatgttctgaggcaaagag
aaaatctcttcctgtttgccatccaaatcagaggtagagcctcgactgta
caaagggaacagataacctctaccattctttatcataagtgccaaatttc
tccttgttctgctccacaggctcagttttcaagtcaaatgttcaaaagga
tcctaaggaggatagaggagtgaagcaggaacaagaacagaggaaaaagc
ttgggtgacgccaaggaaaggcaagctgaggcaaaaacagcaggctggga
tcccgccagcactagtacccagttgtggccttaagagaacccaccagtca
tcctattggttgggaacaacaggttccctatgaaggaggcttagactaaa
gtatcaggagctgagggcttgtagctccaatagaggagcacatatgacct
aaccagtgcttcgagctcctctggactagcatcgaaccaaagaataccca
catgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96250746_96251838
seq2: B6Ng01-284G10.b_46_1129

seq1  GAATTCAGGGTGACACTGTTTTCTTTCAGCACTTTCCTGGCACCTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTGACACTGTTTTCTTTCAGCACTTTCCTGGCACCTTTTTA  50

seq1  TTCCTTCTCTTTTATGTGCTAAACAAGAAAGAATTTCCTGATACCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCTTTTATGTGCTAAACAAGAAAGAATTTCCTGATACCTTCAT  100

seq1  CTCTGTCTTTTCCATTTGATCCTGTAGGACTATTATCAAGAATTCGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTTTCCATTTGATCCTGTAGGACTATTATCAAGAATTCGATAT  150

seq1  ATCTGCTTTTTATAGAGTTTATTGAAACTGATCACTACACATACCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTTTTATAGAGTTTATTGAAACTGATCACTACACATACCTATTC  200

seq1  TTTTCACTTAGCATGAAAATTGCTCAGCTATCTTTTTACAATATTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTAGCATGAAAATTGCTCAGCTATCTTTTTACAATATTTTATT  250

seq1  GTATTTTTTTTTCTCCCACTCTACTGGCCTTTTCACTCTTCTCCACGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTTTCTCCCACTCTACTGGCCTTTTCACTCTTCTCCACGTAC  300

seq1  ACATGTTTAAACTGTTGTACCCACATTCTGCTTCTGTTCAGTCTATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTAAACTGTTGTACCCACATTCTGCTTCTGTTCAGTCTATTCCT  350

seq1  TTTGTGATGCATGAGGGTGGCTTTCTGGAAGTATTTTGAAATAACTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGCATGAGGGTGGCTTTCTGGAAGTATTTTGAAATAACTCTAA  400

seq1  TCAGAAGTGGATAACAGAATGTGTAAGAAGCAGGTATCAGTGACTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTGGATAACAGAATGTGTAAGAAGCAGGTATCAGTGACTGTAAA  450

seq1  CATCAAACCTCACGATTCCTCAGGACCCTAGGCTTTGCATTCTATCGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAACCTCACGATTCCTCAGGACCCTAGGCTTTGCATTCTATCGTTT  500

seq1  AAAAATAGAAAGAAATTTTATCTTTTGCCTGCTTCAAGGCCATCATCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAAAGAAATTTTATCTTTTGCCTGCTTCAAGGCCATCATCCCA  550

seq1  TAAGGATATTATCTCCTCTTCATTTCTTCTATGAGCTTACTATGCAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATATTATCTCCTCTTCATTTCTTCTATGAGCTTACTATGCAGACT  600

seq1  GATCTTTTCATGGGGCTGCATTCATCACTCTGTTCCAGCAGGTGATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTCATGGGGCTGCATTCATCACTCTGTTCCAGCAGGTGATGAGA  650

seq1  CATTCCCCTCTTTGTGCACTACACTGTTCTTAAGAACAGCTTCCACTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCTCTTTGTGCACTACACTGTTCTTAAGAACAGCTTCCACTAAA  700

seq1  CCAGAGAGGAAGTGCTTTCTTCCATTCTGTCTATGATTTATAGAGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGGAAGTGCTTTCTTCCATTCTGTCTATGATTTATAGAGAAGAG  750

seq1  AATTCTTACCACAGCTTGTTCTCATATTTGGATACAAATTGCTAATCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTACCACAGCTTGTTCTCATATTTGGATACAAATTGCTAATCCAC  800

seq1  AGAGGAGATCTGTCACTTATAAAGAAATCTAAAGCTGGTGTTTTATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGATCTGTCACTTATAAAGAAATCTAAAGCTGGTGTTTTATTTGT  850

seq1  TTTGTTTTTCAGTACAGGAGATTGAATTTAGGCCCTTAGCATGCTAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCAGTACAGGAGATTGAATTTAGGCCCTTAGCATGCTAACTA  900

seq1  AGCCTTCTTCTACTAAGCTACC-TTCCCAGCCCTCTAATCCCGATGCTTT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCCTTCTTCTACTAAGCTACCTTTCCCAGCCCTCTAATCCCGATGCTTT  950

seq1  GGAGAATTATTGAAAAGAAAGCCCATTAGGCCAATATTTAATTGTTTCTC  999
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  GGAGAATTA-TGAAAAGAAAGCCCATTA-GCCAATATTTAATTGTTTCTC  998

seq1  TATGAGAGGGCTA-TTTTTGGTTCAATTTGGGGCAAATCCCAACTAATTT  1048
      ||||||||||||| |||||||||||  |||||   |||||| ||| ||||
seq2  TATGAGAGGGCTATTTTTTGGTTCA--TTGGG--CAATCCC-ACTTATTT  1043

seq1  CATTAAAATACTAAATGAAAATGTTAACACTTGCTATTTAAGATG  1093
      |||  |||||||||||||||||||| |||||  |||||| |||||
seq2  CAT--AAATACTAAATGAAAATGTT-ACACTGCCTATTT-AGATG  1084


seq1: chr12_96345474_96346621
seq2: B6Ng01-284G10.g_76_1230 (reverse)

seq1  ACATGT--GTATTCTTTGGTTGGTGGTTTAGTCCCAGA-GAGCTCTGGAA  47
      ||||||  ||||||||||||| |  |  |||| ||||| ||||||  |||
seq2  ACATGTGGGTATTCTTTGGTTCGATG-CTAGT-CCAGAGGAGCTC--GAA  46

seq1  GCACTGGTTAGTTCATATTGTTGCTCCTCCTATGGAGCTACAAACCCCTT  97
      ||||||||||| ||||||   ||||||||   ||||||||||| |||  |
seq2  GCACTGGTTAGGTCATAT--GTGCTCCTCTATTGGAGCTACAAGCCC--T  92

seq1  CAGCTCCTTGGATACTTT-GTCTA--GCTCCTTCATTGGGGACCCTGTGT  144
      ||||||||  |||||||| |||||   ||||||||| ||| |||   |||
seq2  CAGCTCCT--GATACTTTAGTCTAAGCCTCCTTCATAGGGAACCTGTTGT  140

seq1  T-CCAACCAATA-GATGACT-GTGGGTTCTCTTAA-GCCAC-ACTGGTTT  189
      | |||||||||| ||||||| |||||||||||||| ||||| ||||| | 
seq2  TCCCAACCAATAGGATGACTGGTGGGTTCTCTTAAGGCCACAACTGGGTA  190

seq1  CTAGTGCTGGC-GGAT-CCAGCCTGCTG-TTTTGCCTCAGCTTGCC-TTC  235
      ||||||||||| |||| ||||||||||| ||||||||||||||||| |||
seq2  CTAGTGCTGGCGGGATCCCAGCCTGCTGTTTTTGCCTCAGCTTGCCTTTC  240

seq1  CTTGGCGTCA-CCAAGCTTTTTCCTCTGTTCTTGTTCCTGCTTCACTCCT  284
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGTCACCCAAGCTTTTTCCTCTGTTCTTGTTCCTGCTTCACTCCT  290

seq1  CTATCCTCCTTAGGATCCTTTTGAACATTTGACTTG-AAACTGAGCCTGT  333
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTATCCTCCTTAGGATCCTTTTGAACATTTGACTTGAAAACTGAGCCTGT  340

seq1  GGAGCAGAACAAGGAGAAATTTGGCACTTATGATAAAGAATGGTAGAGGT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAACAAGGAGAAATTTGGCACTTATGATAAAGAATGGTAGAGGT  390

seq1  TATCTGTTCCCTTTGTACAGTCGAGGCTCTACCTCTGATTTGGATGGCAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTCCCTTTGTACAGTCGAGGCTCTACCTCTGATTTGGATGGCAA  440

seq1  ACAGGAAGAGATTTTCTCTTTGCCTCAGAACATGAGAATGACTGAATAAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGAGATTTTCTCTTTGCCTCAGAACATGAGAATGACTGAATAAA  490

seq1  TAGCATAGCACAATACAAGGAAGAAAAGAAGACCTATGGGACAAGCAGAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAGCACAATACAAGGAAGAAAAGAAGACCTATGGGACAAGCAGAA  540

seq1  GCAAGACTAACAACAAGGGAGTGGAAAGGGTGAGAGTGGGAGGTGGGGCA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACTAACAACAAGGGAGTGGAAAGGGTGAGAGTGGGAGGTGGGGCA  590

seq1  ATTCTTAATCATACTGTGCCCTTGAATACTTGGTTCTCAAAGTATACTGC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATCATACTGTGCCCTTGAATACTTGGTTCTCAAAGTATACTGC  640

seq1  AATCACACAAAAGAGTATCATGCAAGGACTTCCATAAATAGCAATCTGCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACAAAAGAGTATCATGCAAGGACTTCCATAAATAGCAATCTGCA  690

seq1  AATGCTTGATTGTCATTGAACAAGTAGAAAACCTAAGAAGACTCACTGAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGATTGTCATTGAACAAGTAGAAAACCTAAGAAGACTCACTGAT  740

seq1  AAATTCATTTGTATTTATTTATTTTCCTTCCTACCCTCTCAGTCCTGCTC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTTGTATTTATTTATTTTCCTTCCTACCCTCTCAGTCCTGCTC  790

seq1  AAAATAACCTTGCCTATAACTAATAAGCTTAAGAGAGTAATACCCATGTG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCTTGCCTATAACTAATAAGCTTAAGAGAGTAATACCCATGTG  840

seq1  ATATGAGTATTACTCCTTTATCTTGGTTCTATCAGACTTTTTTATTATCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTATTACTCCTTTATCTTGGTTCTATCAGACTTTTTTATTATCA  890

seq1  ATATTTTGTATCCTGAAAATTCATTTTAATGTCTTAAATGTCTCAAGTGG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTATCCTGAAAATTCATTTTAATGTCTTAAATGTCTCAAGTGG  940

seq1  TGACTATATTTGGGTGTTTTGTCTTCAACTAGATTATTAAGTTAAAGTGA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATATTTGGGTGTTTTGTCTTCAACTAGATTATTAAGTTAAAGTGA  990

seq1  CATTATTAGCATGGTACTCAGTCTGAATGGTGTGTTTATAAGAAGAGAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAGCATGGTACTCAGTCTGAATGGTGTGTTTATAAGAAGAGAGA  1040

seq1  ACTAAACAGAAGATAATACTTAGAATGAATTTAAACAGAGGAAGAGCCTT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGAAGATAATACTTAGAATGAATTTAAACAGAGGAAGAGCCTT  1090

seq1  GTAAAGTGGTGAAGAAAAGAAATTCATTGATAGGAGAAGAGAATGGCTCA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGGTGAAGAAAAGAAATTCATTGATAGGAGAAGAGAATGGCTCA  1140

seq1  CAAGATACTGGGATT  1148
      |||||||||||||||
seq2  CAAGATACTGGGATT  1155


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