BAC Information

Click to search

BAC

Clone NameB6Ng01-284K13
Chromosome12 (Build37)
Map Location 25,623,834 - 25,781,061
singlet/doubletdoublet
Overlap geneMboat2, EG629397, C330002I19Rik, Id2
Upstream geneLOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284K13.bB6Ng01-284K13.g
ACCGA083305GA083306
length1,0911,126
definitionB6Ng01-284K13.b B6Ng01-284K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,623,834 - 25,624,925)(25,779,936 - 25,781,061)
sequence
gaattctaatgtgtctttagcactttctgtgacggatagcacagttgtaa
gttagaatgtattaatttgggggatttttctaataggataataatttcct
tcagactagtaactttcattccgccctgtgcaatgtttagcctttatagg
gcaaggtgggttgggccacgtgatgggtcagctgtgattggatctgtgtt
aacatgagaaagaaagaggcactcatttgggaccagacatggagaatagc
atgctcttcaagtggggcaagtgccattcttaagagaaaatctgactcac
aaaagtgcttctttctgattctcagggatgtttcggaaggatgaagaact
gactccgtcgcagaggggattagctgtgaggtatgtgtctttacatctac
cttggtttgtaccgttgcactggctcatgcaaagtaactgtcttccctcc
gcacagctgcaggccaccaagttgttctgtgctaggctggcaatccctcc
tgggctctgccaagtcctgggcctctgtaccgtgcgtgtctcctgtgaaa
cacaagaggtccactgagttttgtgtctgtgagactctcaaaggacagat
ggcggtgtctgcaactgtagtgataacagtcactgccacccatggacagg
gacttgacagcagtgagtgggccagcgtagtaacgcagcacaaaggtgta
acacacatgttattggttattatccgagggactcacctggccatcatttt
cctttgctctgcttctggaagagctgcctgaagagtggcttggtttcctg
gccacatctatttcaacctaacaccattaggatgaactcccccctttacc
tttggagtaattgcttctaaattaagaattaaagaatgcatgtctgccag
aagatgaaatgatgtccagatgtgtgtcactactcatcctttgacctctg
ggacccttctgtgcatcttcttgggcttcccattgctctgtgccagtctc
caacagcacacatagccattgcatgcacctccctggcgagcagttctggc
tggttcttgactttcccctgacctttggacattcctacctc
cctggtatgatggacgggagcccttccaccaatggcaattcagggatgcc
cgattgagcggccagggcgagtgcacataaaagacgccccgcccggctcg
cgcttcattctgaaccgagcctggtgccgcgcagtcagctcagccccctg
tggcggctccctcccggtcttcctcctacgagcagcatgaaagccttcag
tccggtgaggtccgttaggaaaaacagcctgtcggaccacagcttgggca
tctcccggagcaaaaccccggtggacgacccgatgagtctgctctacaac
atgaacgactgctactccaagctcaaggaactggtgcccagcatccccca
gaacaagaaggtgaccaagatggaaatcctgcagcacgtcatcgattaca
tcttggacctgcagatcgccctggactcgcatcccactatcgtcagcctg
catcaccagagacctggacagaaccaggcgtccaggacgccgctgaccac
cctgaacacggacatcagcatcctgtccttgcaggtgagactagcttgca
agtacgccactgcccagacgctccgggtctcccgagctgtcactcttaaa
gcccatcgtagagacaggttcattaactttatttttgaggaaactgtata
ttgagcgtcatgtgaaatcgctacttataagttctgtgtgggttgcatct
ggatctgcgctgtagcatgatcctgtttcatgggacttgttggcactttt
gtgaaaggaggagggggggctaccttcctttaagattacctaatatcctg
ccttttatcctctttctccccaggcatctgaattcccttctgagcttatg
tcgaatgatagcaaagtactctgtggctaaataaatggtgagtgttgcgg
gtgcctcctgtgttgcgcgtttcggtaatgtgcttgtgtgtctgttaaat
gtttggtttgggtaatgcatgcttacttcactgtgtacggtgccgcttga
cttaccacattaggcatgaggggcttgtagctgtggttgcctcaggacta
cagaacagtttgctttacaaaaggaaaggtaaggaataaaatggaagaaa
agaaatgccagtacttactattgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25623834_25624925
seq2: B6Ng01-284K13.b_47_1137

seq1  GAATTCTAATGTGTCTTTAGCACTTTCTGTGACGGATAGCACAGTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGTGTCTTTAGCACTTTCTGTGACGGATAGCACAGTTGTAA  50

seq1  GTTAGAATGTATTAATTTGGGGGATTTTTCTAATAGGATAATAATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATGTATTAATTTGGGGGATTTTTCTAATAGGATAATAATTTCCT  100

seq1  TCAGACTAGTAACTTTCATTCCGCCCTGTGCAATGTTTAGCCTTTATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTAGTAACTTTCATTCCGCCCTGTGCAATGTTTAGCCTTTATAGG  150

seq1  GCAAGGTGGGTTGGGCCACGTGATGGGTCAGCTGTGATTGGATCTGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGGGTTGGGCCACGTGATGGGTCAGCTGTGATTGGATCTGTGTT  200

seq1  AACATGAGAAAGAAAGAGGCACTCATTTGGGACCAGACATGGAGAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGAAAGAAAGAGGCACTCATTTGGGACCAGACATGGAGAATAGC  250

seq1  ATGCTCTTCAAGTGGGGCAAGTGCCATTCTTAAGAGAAAATCTGACTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTCAAGTGGGGCAAGTGCCATTCTTAAGAGAAAATCTGACTCAC  300

seq1  AAAAGTGCTTCTTTCTGATTCTCAGGGATGTTTCGGAAGGATGAAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCTTCTTTCTGATTCTCAGGGATGTTTCGGAAGGATGAAGAACT  350

seq1  GACTCCGTCGCAGAGGGGATTAGCTGTGAGGTATGTGTCTTTACATCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGTCGCAGAGGGGATTAGCTGTGAGGTATGTGTCTTTACATCTAC  400

seq1  CTTGGTTTGTACCGTTGCACTGGCTCATGCAAAGTAACTGTCTTCCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTGTACCGTTGCACTGGCTCATGCAAAGTAACTGTCTTCCCTCC  450

seq1  GCACAGCTGCAGGCCACCAAGTTGTTCTGTGCTAGGCTGGCAATCCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTGCAGGCCACCAAGTTGTTCTGTGCTAGGCTGGCAATCCCTCC  500

seq1  TGGGCTCTGCCAAGTCCTGGGCCTCTGTACCGTGCGTGTCTCCTGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTGCCAAGTCCTGGGCCTCTGTACCGTGCGTGTCTCCTGTGAAA  550

seq1  CACAAGAGGTCCACTGAGTTTTGTGTCTGTGAGACTCTCAAAGGACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGGTCCACTGAGTTTTGTGTCTGTGAGACTCTCAAAGGACAGAT  600

seq1  GGCGGTGTCTGCAACTGTAGTGATAACAGTCACTGCCACCCATGGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGTCTGCAACTGTAGTGATAACAGTCACTGCCACCCATGGACAGG  650

seq1  GACTTGACAGCAGTGAGTGGGCCAGCGTAGTAACGCAGCACAAAGGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGACAGCAGTGAGTGGGCCAGCGTAGTAACGCAGCACAAAGGTGTA  700

seq1  ACACACATGTTATTGGTTATTATCCGAGGGACTCACCTGGCCATCATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGTTATTGGTTATTATCCGAGGGACTCACCTGGCCATCATTTT  750

seq1  CCTTTGCTCTGCTTCTGGAAGAGCTGCCTGAAGAGTGGCTTGGTTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCTGCTTCTGGAAGAGCTGCCTGAAGAGTGGCTTGGTTTCCTG  800

seq1  GCCACATCTATTTCAACCTAACACCATTAGGATGAACTCCCCCCTTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATCTATTTCAACCTAACACCATTAGGATGAACTCCCCCCTTTACC  850

seq1  TTTGGAGTAATTGCTTCTAAATTAAGAATTAAGGAATGCATGTCTGCCAG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGGAGTAATTGCTTCTAAATTAAGAATTAAAGAATGCATGTCTGCCAG  900

seq1  AAGAATGAAATGATGTCCAGATGTGTGTCACTACTCATCCTTTGACCTCT  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-ATGAAATGATGTCCAGATGTGTGTCACTACTCATCCTTTGACCTCT  949

seq1  GGGACCCTTCTGTGCATCTTCTTTGGGCTTCCCATTGCTCTGTGGCCAGT  1000
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  GGGACCCTTCTGTGCATCTTC-TTGGGCTTCCCATTGCTCTGT-GCCAGT  997

seq1  CTCCAAACAGCAACACATAGCCATTGCATGCA-CTCCCTGGCGAGCAG-T  1048
      |||| |||||| |||||||||||||||||||| ||||||||||||||| |
seq2  CTCC-AACAGC-ACACATAGCCATTGCATGCACCTCCCTGGCGAGCAGTT  1045

seq1  CTGGCTGGTTCTTGACTTTTCCCTGACC-TTGGACATT-CTACCTC  1092
      ||||||||||||||||||| |||||||| ||||||||| |||||||
seq2  CTGGCTGGTTCTTGACTTTCCCCTGACCTTTGGACATTCCTACCTC  1091

seq1: chr12_25779936_25781061
seq2: B6Ng01-284K13.g_75_1200 (reverse)

seq1  CTTC-ATAGTAAGTTACTGGCATTTCTTTTCTTTC-TTTTTTTTCTTTCT  48
      |||| |||||||| ||||||||||||||||||| | |||| || ||| | 
seq2  CTTCAATAGTAAG-TACTGGCATTTCTTTTCTTCCATTTTATTCCTTACC  49

seq1  TTTCTGTTTTTGTAAAGGCAACTGTTCTGTAGTCCTGA-GCAACCACAGC  97
      ||||   ||||||||||  ||||||||||||||||||| |||||||||||
seq2  TTTC--CTTTTGTAAAGCAAACTGTTCTGTAGTCCTGAGGCAACCACAGC  97

seq1  TACAAGCCCCTTCATGCCT-ATGTGGTAAGTCAAGCGGCACCCGTAACAC  146
      |||||||||| |||||||| |||||||||||||||||||| |||| ||||
seq2  TACAAGCCCC-TCATGCCTAATGTGGTAAGTCAAGCGGCA-CCGT-ACAC  144

seq1  AGTGAAGTAAGCATGCATTTACCAAACCAAACATTTAACAGACACACAAG  196
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  AGTGAAGTAAGCATGCATTACCCAAACCAAACATTTAACAGACACACAAG  194

seq1  CACATTACCGAAACGCGC-ACACAGGAGGCACCCGCAACACTCACCATTT  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACATTACCGAAACGCGCAACACAGGAGGCACCCGCAACACTCACCATTT  244

seq1  ATTTAGCCACAGAGTACTTTGCTATCATTCGACATAAGCTCAGAAGGGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCACAGAGTACTTTGCTATCATTCGACATAAGCTCAGAAGGGAA  294

seq1  TTCAGATGCCTGGGGAGAAAGAGGATAAAAGGCAGGATATTAGGTAATCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGCCTGGGGAGAAAGAGGATAAAAGGCAGGATATTAGGTAATCT  344

seq1  TAAAGGAAGGTAG-CCCCCCTCCTCCTTTCACAAAAGTGCCAACAAGTCC  394
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGGTAGCCCCCCCTCCTCCTTTCACAAAAGTGCCAACAAGTCC  394

seq1  CATGAAACAGGATCATGCTACAGCGCAGATCCAGATGCAACCCACACAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACAGGATCATGCTACAGCGCAGATCCAGATGCAACCCACACAGA  444

seq1  ACTTATAAGTAGCGATTTCACATGACGCTCAATATACAGTTTCCTCAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAGTAGCGATTTCACATGACGCTCAATATACAGTTTCCTCAAAA  494

seq1  ATAAAGTTAATGAACCTGTCTCTACGATGGGCTTTAAGAGTGACAGCTCG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTAATGAACCTGTCTCTACGATGGGCTTTAAGAGTGACAGCTCG  544

seq1  GGAGACCCGGAGCGTCTGGGCAGTGGCGTACTTGCAAGCTAGTCTCACCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCGGAGCGTCTGGGCAGTGGCGTACTTGCAAGCTAGTCTCACCT  594

seq1  GCAAGGACAGGATGCTGATGTCCGTGTTCAGGGTGGTCAGCGGCGTCCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAGGATGCTGATGTCCGTGTTCAGGGTGGTCAGCGGCGTCCTG  644

seq1  GACGCCTGGTTCTGTCCAGGTCTCTGGTGATGCAGGCTGACGATAGTGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCTGGTTCTGTCCAGGTCTCTGGTGATGCAGGCTGACGATAGTGGG  694

seq1  ATGCGAGTCCAGGGCGATCTGCAGGTCCAAGATGTAATCGATGACGTGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAGTCCAGGGCGATCTGCAGGTCCAAGATGTAATCGATGACGTGCT  744

seq1  GCAGGATTTCCATCTTGGTCACCTTCTTGTTCTGGGGGATGCTGGGCACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTTCCATCTTGGTCACCTTCTTGTTCTGGGGGATGCTGGGCACC  794

seq1  AGTTCCTTGAGCTTGGAGTAGCAGTCGTTCATGTTGTAGAGCAGACTCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTGAGCTTGGAGTAGCAGTCGTTCATGTTGTAGAGCAGACTCAT  844

seq1  CGGGTCGTCCACCGGGGTTTTGCTCCGGGAGATGCCCAAGCTGTGGTCCG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCGTCCACCGGGGTTTTGCTCCGGGAGATGCCCAAGCTGTGGTCCG  894

seq1  ACAGGCTGTTTTTCCTAACGGACCTCACCGGACTGAAGGCTTTCATGCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGTTTTTCCTAACGGACCTCACCGGACTGAAGGCTTTCATGCTG  944

seq1  CTCGTAGGAGGAAGACCGGGAGGGAGCCGCCACAGGGGGCTGAGCTGACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAGGAGGAAGACCGGGAGGGAGCCGCCACAGGGGGCTGAGCTGACT  994

seq1  GCGCGGCACCAGGCTCGGTTCAGAATGAAGCGCGAGCCGGGCGGGGCGTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGCACCAGGCTCGGTTCAGAATGAAGCGCGAGCCGGGCGGGGCGTC  1044

seq1  TTTTATGTGCACTCGCCCTGGCCGCTCAATCGGGCATCCCTGAATTGCCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGCACTCGCCCTGGCCGCTCAATCGGGCATCCCTGAATTGCCA  1094

seq1  TTGGTGGAAGGGCTCCCGTCCATCATACCAGG  1126
      ||||||||||||||||||||||||||||||||
seq2  TTGGTGGAAGGGCTCCCGTCCATCATACCAGG  1126