BAC Information

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BAC

Clone NameB6Ng01-285E04
Chromosome12 (Build37)
Map Location 3,749,627 - 3,886,243
singlet/doubletdoublet
Overlap geneDtnb, Dnmt3a
Upstream geneLOC668260, LOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040, Asxl2, LOC627245, LOC668197
Downstream geneLOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285E04.bB6Ng01-285E04.g
ACCGA083754GA083755
length1,185713
definitionB6Ng01-285E04.b B6Ng01-285E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,885,043 - 3,886,243)(3,749,627 - 3,750,339)
sequence
gaattccagggatgcaaagtagggatagatgtaacctccaagcttttagg
gcagggtgggcagctctgcagctcacctgcaatggcattattttcctggt
agcaagcagatggtgtgagaagcatgaggtaagccatattcatttatcct
tagagacgggcagtggcctgagcctgctgaccttgggagaattcccatta
gcagcatctaatgaagaagttagaggatccactaaaagcctaaaagccag
tccttccttcttgctgactccttgactccacccaccctgtgtgactagcc
caagcactctccagccctaccgagctcctgggttctctcccatacttgga
agctccaatccaccaggctgcctgtgggttcctgctacatcttcctcatg
ccaccatggccatccatcttctgcccatttccctgcagctctggagccag
tcccccagccagcctcccttttgcctatgcctacactgttgttcctctga
tgcctatatctggggacctgggcaagagacactgaggagaccttgggggt
ggggaaggctatgcggcacagacccagggctcacttaccagacagtgatg
acaggattctacgtgaccacctagcttctctaaccagtctaataggtcta
gagaaaccatctgtccaataccgatgggattaaggaagctagaggggcta
acacaagagcagaaagtacctgaggataagtttgctcaagtggatgttat
caccctggagaaacctcagtctgcagagaggtgctaatcacccccagtag
ggagagtgtgccaagaggaacacagtattctacccctcccccaacctttc
tccagaatccaggggtcagcggaagaggcagagggaccaccatttctgat
tcaggcatgcagaccctctcaagtttcagggtccaaagaagatgggagga
gcccagaatgcttggcttggctattgccgaaaacaatggggtggcctcca
tctccatccggagagaaatttaatcaagcttgggtccttcgcctttccac
tccccccccctcaccaggcttagaaaagtgagagtccaccccagcagcag
cactgtccaatacttgagaaccttgactgtcgtttcaatcagtgataact
ggccccaggcagatacaaagcagctctcatggttg
gaattcctgtattgggaaaccaaactagtgagacagaatctgttcatcag
tagaacctgacgtcagaacaggctgcctgcgagacccagcaaccactctg
gggaggggctcctcagtcaccattacagagctaggtgagaactgggctcc
ctcaaatccctagtgggtggtggttgtcatccagaggttgtttttaaaag
acagctatgagttcctatcctgtcaaggcggggagaggcggggctcgtgt
ttgttaacaagttacagctctggctctcttgtcagccctgatgtagaggc
tcctgtcagcctccttcagacagggagggctaggcagcatggtgcctgag
caccagctctgagacggcaaactgagggtgaagaaatgcctttcacttcc
actgtggtacagggtacagtgactccagagctgagaacgtaaggctatag
ggtcaggatagaacagagctgtattggctccctgtttgtgatctctggga
gaggaacctggcatgtaatgaccagatctgtgatgagagcctttttcccc
tctataccacagaaatctgtgtgttcccgtgactgaagacattatggaaa
ccaagtctgatgccttagttcttatcaaactttagattcttgaatagtgt
gcctttctgtttcttttgtagcatttagaattctacatttgatatttgaa
tgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_3885043_3886243
seq2: B6Ng01-285E04.b_46_1230 (reverse)

seq1  CAACCA--GGAGCTG-TTTGTTTAATCTGCCTGGGGCAGATTAATCACAC  47
      ||||||   |||||| |||||   |||||||||||||   |||    |||
seq2  CAACCATGAGAGCTGCTTTGT---ATCTGCCTGGGGCCAGTTA---TCAC  44

seq1  TGGGAATTG-AACGACAGCTCAGGTCTTCAGGTAATTGGACAGTGCCTGC  96
      ||   |||| ||||||||   ||||  ||| || ||||||||||| ||||
seq2  TG---ATTGAAACGACAGTCAAGGTTCTCAAGT-ATTGGACAGTG-CTGC  89

seq1  TGCTGGGGTTGCGACTCTCAC-TTTCTAAGCCTGGTTGGGGGGGGGGGGA  145
      |||||||||   ||||||||| ||||||||||||||  | ||||||||||
seq2  TGCTGGGGT--GGACTCTCACTTTTCTAAGCCTGGT--GAGGGGGGGGGA  135

seq1  GGTGGAAAGGCCGGAAAGGACCCAGGCTTTGATTTAAATTTCCTCTTCCG  195
       ||||||||||    ||||||||| || |||| |||||||| ||| ||||
seq2  -GTGGAAAGGC---GAAGGACCCAAGC-TTGA-TTAAATTT-CTC-TCCG  177

seq1  GATGGAGATGGAGGCCACCCCATTGTTTTCGGCAATAGCCAAGCC-AGCA  244
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATGGAGATGGAGGCCACCCCATTGTTTTCGGCAATAGCCAAGCCAAGCA  227

seq1  TTCTGGGCTCCTCCCATCTTCTTTGGACCCTGAAACTTGAGAGGGTCTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTCCTCCCATCTTCTTTGGACCCTGAAACTTGAGAGGGTCTGC  277

seq1  ATGCCTGAATCAG-AATGGTGGTCCCTCTGCCTCTTCCGCTGACCCCTGG  343
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGAATCAGAAATGGTGGTCCCTCTGCCTCTTCCGCTGACCCCTGG  327

seq1  ATTCTGGAGAAAGGTTGGGGGAGGGGTAGAATACTGTGTTCCTCTTGGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAGAAAGGTTGGGGGAGGGGTAGAATACTGTGTTCCTCTTGGCA  377

seq1  CACTCTCCCTACTGGGGGTGATTAGCACCTCTCTGCAGACTGAGGTTTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCCTACTGGGGGTGATTAGCACCTCTCTGCAGACTGAGGTTTCT  427

seq1  CCAGGGTGATAACATCCACTTGAGCAAACTTATCCTCAGGTACTTTCTGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGATAACATCCACTTGAGCAAACTTATCCTCAGGTACTTTCTGC  477

seq1  TCTTGTGTTAGCCCCTCTAGCTTCCTTAATCCCATCGGTATTGGACAGAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTTAGCCCCTCTAGCTTCCTTAATCCCATCGGTATTGGACAGAT  527

seq1  GGTTTCTCTAGACCTATTAGACTGGTTAGAGAAGCTAGGTGGTCACGTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTAGACCTATTAGACTGGTTAGAGAAGCTAGGTGGTCACGTAG  577

seq1  AATCCTGTCATCACTGTCTGGTAAGTGAGCCCTGGGTCTGTGCCGCATAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTCATCACTGTCTGGTAAGTGAGCCCTGGGTCTGTGCCGCATAG  627

seq1  CCTTCCCCACCCCCAAGGTCTCCTCAGTGTCTCTTGCCCAGGTCCCCAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCACCCCCAAGGTCTCCTCAGTGTCTCTTGCCCAGGTCCCCAGA  677

seq1  TATAGGCATCAGAGGAACAACAGTGTAGGCATAGGCAAAAGGGAGGCTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCATCAGAGGAACAACAGTGTAGGCATAGGCAAAAGGGAGGCTGG  727

seq1  CTGGGGGACTGGCTCCAGAGCTGCAGGGAAATGGGCAGAAGATGGATGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGACTGGCTCCAGAGCTGCAGGGAAATGGGCAGAAGATGGATGGC  777

seq1  CATGGTGGCATGAGGAAGATGTAGCAGGAACCCACAGGCAGCCTGGTGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCATGAGGAAGATGTAGCAGGAACCCACAGGCAGCCTGGTGGA  827

seq1  TTGGAGCTTCCAAGTATGGGAGAGAACCCAGGAGCTCGGTAGGGCTGGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTTCCAAGTATGGGAGAGAACCCAGGAGCTCGGTAGGGCTGGAG  877

seq1  AGTGCTTGGGCTAGTCACACAGGGTGGGTGGAGTCAAGGAGTCAGCAAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGGCTAGTCACACAGGGTGGGTGGAGTCAAGGAGTCAGCAAGA  927

seq1  AGGAAGGACTGGCTTTTAGGCTTTTAGTGGATCCTCTAACTTCTTCATTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGACTGGCTTTTAGGCTTTTAGTGGATCCTCTAACTTCTTCATTA  977

seq1  GATGCTGCTAATGGGAATTCTCCCAAGGTCAGCAGGCTCAGGCCACTGCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGCTAATGGGAATTCTCCCAAGGTCAGCAGGCTCAGGCCACTGCC  1027

seq1  CGTCTCTAAGGATAAATGAATATGGCTTACCTCATGCTTCTCACACCATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTAAGGATAAATGAATATGGCTTACCTCATGCTTCTCACACCATC  1077

seq1  TGCTTGCTACCAGGAAAATAATGCCATTGCAGGTGAGCTGCAGAGCTGCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTACCAGGAAAATAATGCCATTGCAGGTGAGCTGCAGAGCTGCC  1127

seq1  CACCCTGCCCTAAAAGCTTGGAGGTTACATCTATCCCTACTTTGCATCCC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCCCTAAAAGCTTGGAGGTTACATCTATCCCTACTTTGCATCCC  1177

seq1  TGGAATTC  1201
      ||||||||
seq2  TGGAATTC  1185

seq1: chr12_3749627_3750339
seq2: B6Ng01-285E04.g_67_779

seq1  GAATTCCTGTATTGGGAAACCAAACTAGTGAGACAGAATCTGTTCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTATTGGGAAACCAAACTAGTGAGACAGAATCTGTTCATCAG  50

seq1  TAGAACCTGACGTCAGAACAGGCTGCCTGCGAGACCCAGCAACCACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTGACGTCAGAACAGGCTGCCTGCGAGACCCAGCAACCACTCTG  100

seq1  GGGAGGGGCTCCTCAGTCACCATTACAGAGCTAGGTGAGAACTGGGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGCTCCTCAGTCACCATTACAGAGCTAGGTGAGAACTGGGCTCC  150

seq1  CTCAAATCCCTAGTGGGTGGTGGTTGTCATCCAGAGGTTGTTTTTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCCCTAGTGGGTGGTGGTTGTCATCCAGAGGTTGTTTTTAAAAG  200

seq1  ACAGCTATGAGTTCCTATCCTGTCAAGGCGGGGAGAGGCGGGGCTCGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATGAGTTCCTATCCTGTCAAGGCGGGGAGAGGCGGGGCTCGTGT  250

seq1  TTGTTAACAAGTTACAGCTCTGGCTCTCTTGTCAGCCCTGATGTAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACAAGTTACAGCTCTGGCTCTCTTGTCAGCCCTGATGTAGAGGC  300

seq1  TCCTGTCAGCCTCCTTCAGACAGGGAGGGCTAGGCAGCATGGTGCCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAGCCTCCTTCAGACAGGGAGGGCTAGGCAGCATGGTGCCTGAG  350

seq1  CACCAGCTCTGAGACGGCAAACTGAGGGTGAAGAAATGCCTTTCACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTCTGAGACGGCAAACTGAGGGTGAAGAAATGCCTTTCACTTCC  400

seq1  ACTGTGGTACAGGGTACAGTGACTCCAGAGCTGAGAACGTAAGGCTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTACAGGGTACAGTGACTCCAGAGCTGAGAACGTAAGGCTATAG  450

seq1  GGTCAGGATAGAACAGAGCTGTATTGGCTCCCTGTTTGTGATCTCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGATAGAACAGAGCTGTATTGGCTCCCTGTTTGTGATCTCTGGGA  500

seq1  GAGGAACCTGGCATGTAATGACCAGATCTGTGATGAGAGCCTTTTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACCTGGCATGTAATGACCAGATCTGTGATGAGAGCCTTTTTCCCC  550

seq1  TCTATACCACAGAAATCTGTGTGTTCCCGTGACTGAAGACATTATGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCACAGAAATCTGTGTGTTCCCGTGACTGAAGACATTATGGAAA  600

seq1  CCAAGTCTGATGCCTTAGTTCTTATCAAACTTTAGATTCTTGAATAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTGATGCCTTAGTTCTTATCAAACTTTAGATTCTTGAATAGTGT  650

seq1  GCCTTTCTGTTTCTTTTGTAGCATTTAGAATTCTACATTTGATATTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGTTTCTTTTGTAGCATTTAGAATTCTACATTTGATATTTGAA  700

seq1  TGGGGGGGGGGGG  713
      |||||||||||||
seq2  TGGGGGGGGGGGG  713