BAC Information

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BAC

Clone NameB6Ng01-285K20
Chromosome12 (Build37)2 (Build37)
Map Location 4,154,005 - 4,154,86390,846,330 - 90,847,455
singlet/doubletsingletsinglet
Overlap geneAdcy3
Upstream geneLOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c, LOC100043040, Asxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik
Downstream geneCenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285K20.bB6Ng01-285K20.g
ACCGA084065GA084066
length8091,144
definitionB6Ng01-285K20.b B6Ng01-285K20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,154,005 - 4,154,863)(90,846,330 - 90,847,455)
sequence
gaattcactctatagaccaggctgacctcagactcacagagatctatctg
cctctgctttctgagtgctgggattaaaggtgtgagtcaccaaagtccag
ctaagatgccttctattactttttaatatttgtaccaaaactcaaaagca
gtcttgaatagactgtggcacattgctatcctgacactgaactatgtagc
cccaccctcacctccatgcatcctgttctgtaaaagagacagttttgtaa
gctgtcatggtgtcaagcctggtctacagagagagttccaagacagccag
ggctccaggcctgcagagagaaaaaaagacagtgtttggtaagatagctc
agtaggtaaaggtactgttgccaaacctgacaacctaagtttgatccttg
gaacccacgtggtagaaatagaaaactgattcctgcaagctgtcctctac
ctgcacatgagcttcatagcacatgcctgcccacacacagacacactacc
cacccacccacactcacacaatgaataaatgaattaataagtaaataaaa
tataatttaaggactaaagagttgggtcagtggttaagagcacttgtctc
agcacccatatggtggttcacaactatctgtatctaggggatccaattcc
ctcttctgacctttgagagcaccagacatgcacacagtgtacataaatac
acacatacatataaatattatacatacatatatatgtgtgtgtatatata
tacatatgtatatatatatatatatatatatgtgtgtgtgtatgtatgca
gagtgtgtg
gaattcaagaccagtctggtctacatgttgagtttgaggccaaccagggc
tacaacaacaacaacaactggttgatggttgtaacctaaagaatgtgatg
tgttggcctcactaggagagcatgggagagaggaagaaactaggaatggc
atgaaccaaggtgtgctgtgctggggtccagattgtttctctgtgctagt
tttgtcctttactatgctgtactctgctgcacagagacttgagcttgtct
cactatccagagaatggtcttttgagccagggcactagctctgcagtcag
acttgcatgtctgttggcttgggttatgtttgactttgttctctctgggg
gcttctgcactcttgctttgctgtgctgtagagttatcccagatgcagaa
ccagccctcactctcactcttgttctgttttttggtgtaatgtctagctt
tatttgcagctcctacagcagactgcctcctctgggaacctcaacaccct
gagcagcctccacccaatgggaggtaagtgcttccctgctgcagaggagc
accagtgcacaggtcagcagacagcttcctcagtctgagagatgggtacc
atttgtgtcaaaatgttactgctcgtgacataagtctcaggactcagctt
tcttgattctatcatgtgaccctgttgttggtcaatgccacttagctctt
tagttgtgtggtatcttttaagttcctgttggggaaggaaaatggcaaag
aaaacttagggaccattcatgctttaggccattcagatgcagaaaaacct
atatagtaaagttagtttctatgacttacccaaagctactagaaccaggg
agtttttgtgtttctgaattcatgctgttgttgctgttaaggtttatgga
aaatgtaagtaacagatacatgggtttatagcaaaatgaagctctaaaga
cagtcaggagccaggggctatcaaatgagtcctgaagaggcagaatgtga
ggagtctacagtagccttgttgcctgtaccctgccagtgggggctgtaag
ttagggcaatggccaattggagaaagggggagcacggctgggtggagatg
gcctcatgggtaagagccacccccgactgctcctctcccgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_4154005_4154863
seq2: B6Ng01-285K20.b_310_633

seq1  AGCCTGGTCTACAGAGCGAGTTCCAGGACAGCCAGGGCTACACAAGGATA  50
      |||||||||||||||| |||||||| |||||||||||||   | |||   
seq2  AGCCTGGTCTACAGAGAGAGTTCCAAGACAGCCAGGGCT---CCAGG---  44

seq1  CCTGTCTTGGAAAACAAAAACAAAACAAAACAAAACAAAACAAAACACCC  100
      ||||          || | | |||| || |||         || | | | 
seq2  CCTG----------CAGAGAGAAAAAAAGACAGTGTTTGGTAAGATAGCT  84

seq1  CAATA-------ATTCTGAGGCCAATTCTGCCA--CCACG------CCTT  135
      || ||        | |||  |||||  ||| ||  | | |      ||||
seq2  CAGTAGGTAAAGGTACTGTTGCCAAACCTGACAACCTAAGTTTGATCCTT  134

seq1  CTCGGCCA--TGGTGGGA--AGTGTCCTTATT-CTGTAGGCTAGAATTAA  180
           |||  |||| | |  ||    || ||| ||| | ||     |   
seq2  GGAACCCACGTGGTAGAAATAGAAAACTGATTCCTGCAAGC-----TGTC  179

seq1  TTCTTCCTTCCTTCTTTTGGTTCTTGTCAGGGGTTTAGTTAAAACAACA-  229
       ||| ||| |   | |  | ||| |  ||   |  |        | ||| 
seq2  CTCTACCTGC--ACATGAGCTTCATAGCACATGCCT------GCCCACAC  221

seq1  ACAACAACAACAACAACAACAACAACAACAACAAAAT-AACCAATGAACT  278
      |||   |||  | | ||  || | |||   ||| ||| ||  |||||| |
seq2  ACAGACACACTACCCAC-CCACCCACACTCACACAATGAATAAATGAATT  270

seq1  CTGTCTCAAAAAAAGAAAAAAAGATGGCTCAATATTCACATGCAAAACTG  328
               || ||| ||| || ||     |  ||| |    | |||  |
seq2  ---------AATAAGTAAATAAAAT-----ATAATTTAAGGACTAAAGAG  306

seq1  CCTATGGCAGTG--TGAGTGTAACCCCGACATGGTGGAGTAGAGACTAGA  376
        |  | |||||  | ||                                
seq2  -TTGGGTCAGTGGTTAAGA-------------------------------  324

seq1  AGGTTCTCGGGCTCACGCCAGCCAGGCTAGCTGTAATGGCAAGCTTCCGG  426
                                                        
seq2  --------------------------------------------------  324

seq1  TTCAGTGAGAGCCCCTGTTCCCTGTTTACACACCCACACTCACACAAAGC  476
                                                        
seq2  --------------------------------------------------  324

seq1  ATGCATACAGGAAAGAAAACAAACAAAAAAGACACAGCCTGATCTAGTTT  526
                                                        
seq2  --------------------------------------------------  324

seq1  AGCAAAAAGTGACGAAACTAAAAGAATGAGTGAGCCCATAATTGTGTTTG  576
                                                        
seq2  --------------------------------------------------  324

seq1  GAGATTTCTGCACTCCTTAGTTACTGACAGAACAAACTGAAATTAGTATC  626
                                                        
seq2  --------------------------------------------------  324

seq1  TGTCTGTTACGTACATGGAACATTTGAGCAAACTGAACAGTCAGCAATAC  676
                                                        
seq2  --------------------------------------------------  324

seq1  CTACAGCACATTCCTGAAAGCTTATCCCTATCAGCTGAAGCGCGTAGGCT  726
                                                        
seq2  --------------------------------------------------  324

seq1  TCTCAAAGACTCTGACATGCTCTTGGGGTATGTATGTACTAAAGAATTGT  776
                                                        
seq2  --------------------------------------------------  324

seq1  AGCTCAGCACATACCATATCACATCTTCTTATACATTTAAAAGCAATGCA  826
                                                        
seq2  --------------------------------------------------  324

seq1  GTTAGGGCTAGAGAGATGGCTCAGTGGTTAAGA  859
                                       
seq2  ---------------------------------  324

seq1: chr2_90846330_90847455
seq2: B6Ng01-285K20.g_66_1209

seq1  GAATTCAAGACCAGTCTGGTCTACATGTTGAGTTTGAGGCCAACCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCAGTCTGGTCTACATGTTGAGTTTGAGGCCAACCAGGGC  50

seq1  TACAACAACAACAACAACTGGTTGATGGTTGTAACCTAAAGAATGTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAACAACAACAACTGGTTGATGGTTGTAACCTAAAGAATGTGATG  100

seq1  TGTTGGCCTCACTAGGAGAGCATGGGAGAGAGGAAGAAACTAGGAATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCTCACTAGGAGAGCATGGGAGAGAGGAAGAAACTAGGAATGGC  150

seq1  ATGAACCAAGGTGTGCTGTGCTGGGGTCCAGATTGTTTCTCTGTGCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCAAGGTGTGCTGTGCTGGGGTCCAGATTGTTTCTCTGTGCTAGT  200

seq1  TTTGTCCTTTACTATGCTGTACTCTGCTGCACAGAGACTTGAGCTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTTACTATGCTGTACTCTGCTGCACAGAGACTTGAGCTTGTCT  250

seq1  CACTATCCAGAGAATGGTCTTTTGAGCCAGGGCACTAGCTCTGCAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCAGAGAATGGTCTTTTGAGCCAGGGCACTAGCTCTGCAGTCAG  300

seq1  ACTTGCATGTCTGTTGGCTTGGGTTATGTTTGACTTTGTTCTCTCTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGTCTGTTGGCTTGGGTTATGTTTGACTTTGTTCTCTCTGGGG  350

seq1  GCTTCTGCACTCTTGCTTTGCTGTGCTGTAGAGTTATCCCAGATGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCACTCTTGCTTTGCTGTGCTGTAGAGTTATCCCAGATGCAGAA  400

seq1  CCAGCCCTCACTCTCACTCTTGTTCTGTTTTTTGGTGTAATGTCTAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCACTCTCACTCTTGTTCTGTTTTTTGGTGTAATGTCTAGCTT  450

seq1  TATTTGCAGCTCCTACAGCAGACTGCCTCCTCTGGGAACCTCAACACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAGCTCCTACAGCAGACTGCCTCCTCTGGGAACCTCAACACCCT  500

seq1  GAGCAGCCTCCACCCAATGGGAGGTAAGTGCTTCCCTGCTGCAGAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTCCACCCAATGGGAGGTAAGTGCTTCCCTGCTGCAGAGGAGC  550

seq1  ACCAGTGCACAGGTCAGCAGACAGCTTCCTCAGTCTGAGAGATGGGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCACAGGTCAGCAGACAGCTTCCTCAGTCTGAGAGATGGGTACC  600

seq1  ATTTGTGTCAAAATGTTACTGCTCGTGACATAAGTCTCAGGACTCAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTCAAAATGTTACTGCTCGTGACATAAGTCTCAGGACTCAGCTT  650

seq1  TCTTGATTCTATCATGTGACCCTGTTGTTGGTCAATGCCACTTAGCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTCTATCATGTGACCCTGTTGTTGGTCAATGCCACTTAGCTCTT  700

seq1  TAGTTGTGTGGTATCTTTTAAGTTCCTGTTGGGGAAGGAAAATGGCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTGTGGTATCTTTTAAGTTCCTGTTGGGGAAGGAAAATGGCAAAG  750

seq1  AAAACTTAGGGACCATTCAGGC-TTAGGCCATTCAGATGCAGAAAAAACC  799
      ||||||||||||||||||| || ||||||||||||||||||| |||||||
seq2  AAAACTTAGGGACCATTCATGCTTTAGGCCATTCAGATGCAG-AAAAACC  799

seq1  TATATAGTAAAGTTAGTTTCTATGACTTACCCAAAGCTACTAGAACCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTAAAGTTAGTTTCTATGACTTACCCAAAGCTACTAGAACCAGG  849

seq1  GAGTTTTTGTGTTTCTGAATTCATGCTGTTGTTGCTGTTAAGGTTTATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTGTGTTTCTGAATTCATGCTGTTGTTGCTGTTAAGGTTTATGG  899

seq1  AAAATGTAAGTAACAGATACAT-GGTTTATAGCAAAATGAAGCTCTAAAG  948
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAATGTAAGTAACAGATACATGGGTTTATAGCAAAATGAAGCTCTAAAG  949

seq1  ACAGTCAGGAGCCAGGGGCTATCAAATGAGT-CTGAAGAGGCAGAATGTG  997
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAGTCAGGAGCCAGGGGCTATCAAATGAGTCCTGAAGAGGCAGAATGTG  999

seq1  AGGAGTTCTACAGTAGCCT--GTGCCTGTACCCTGCCCAGTGGGG--TGT  1043
      ||||| |||||||||||||   ||||||||||||| |||||||||  |||
seq2  AGGAG-TCTACAGTAGCCTTGTTGCCTGTACCCTG-CCAGTGGGGGCTGT  1047

seq1  -AGTTA-GGCATTG--CA--TTGAGAAA-GGGGAGCACGGGCTGGT-GAG  1085
       ||||| |||| ||  ||  | |||||| |||||||||||   ||| |||
seq2  AAGTTAGGGCAATGGCCAATTGGAGAAAGGGGGAGCACGGCTGGGTGGAG  1097

seq1  ATGG-CTCAGTGGGTAAGAG---CACCCGACTG---CTCTTCCGAAGG  1126
      |||| |||| ||||||||||   | ||||||||   |||| |||||||
seq2  ATGGCCTCA-TGGGTAAGAGCCACCCCCGACTGCTCCTCTCCCGAAGG  1144