BAC Information

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BAC

Clone NameB6Ng01-286L14
Chromosome12 (Build37)
Map Location 52,897,266 - 53,079,730
singlet/doubletdoublet
Overlap geneHectd1, EG544864, LOC100039476, Heatr5a, LOC676784
Upstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1
Downstream gene6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5, Akap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286L14.bB6Ng01-286L14.g
ACCGA084843GA084844
length1,1841,085
definitionB6Ng01-286L14.b B6Ng01-286L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,897,266 - 52,898,444)(53,078,681 - 53,079,730)
sequence
ggaattctttcctcataattctgcctcatattttgaaacatacaactctt
taaaccgtacaacaaaccacttgaagtaggttttgttactgaagttttat
aaagaatgtttaagaaaatagagataacaaatccatttgaattcactttc
ctttatcagcatatttttatacatacatataaatgtgatacaaacttcct
aattaacactactttataaattaagttctcttaaaagtatttttctatta
cattaaaaatagcatcatttggggaaagcaagttttttcctttagtacac
agaagagactaatccatctaagcacgtaaacacttttatacagactgaat
gcatatgcgtacaccctccacacatgcaaactgatttttaaaaggccaga
aaccctagtgtggtggcttagacctatagttctaatgcacagttacagcc
tgaggattgctagcctgggacaccatgaagctaaaaagcttctgtacagc
aaaggacatcatggtactgacgagacagtcaatacgttgctgtatacgtc
tgacagggctggtacctagaatatacagagggaaaaacacctaaccatgg
aaaaaagaactcaaaaattggagcatggccgggcgtggtggctcacgcct
ttaatcccagcactagagaggcagcggcaggcagatttctgagttcgagg
ccagtccagtgtatagagtgagtggcaggacagccagggctacacagaga
aaccctgtctcaaaacaaacaaacaaacaaacaaacaaaattggagcatg
gaaatatttagagtttcacaaaagataggaaaacaaatacctatgtggat
gtgtgaaaagggaaacaattagtgttggtagaataaactatgtatagcca
ctgtggaaatcagtgtggcaattcctcaaaaggctagaaacgaatctatc
tatgatccccctgtccacacctgggcagattacccaaagaattctaatat
catactctagaagtgatttgctcaactgctggttcttatttatagtaacc
agaaatggaaacagcatagatttccatcactgaaagatggattaatgaaa
tggtggtgccatatacacctgtggactattatttaaccaattaagaaaat
gaagttgccagtcatatggtcaacaacagttatg
gaattccaggacagccagtagctacacagagaaaccctgtctcaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaa
gaaagaaagaaaagaaaagaaaagaagagaaaaatactatgttctaccaa
attagaaaagctaaacagatgcatttttatgcctatttcctaacaaaatt
aaacaaagatgaaatatacaatctagacagatctataagaagcaatgaaa
ttggccaggtgtggtggtgcatgcctttaagcccagctcttgggagggag
agacaagcaaatctctgtgagtaccaggtcagcctgatccacattgtaag
ttccaggaccaccagagcttttagagacaccctgtcttaaaaggaaaaaa
aagaagtgtaagaataaaaagcaatgtggtagaaatagcaataaaaaata
atctagccaaaaaaagtccagaaccagatagatttactgaaaaactctac
tagacttacaaataagaactaacaccaaaagatcataatatctttatcat
aaataataagtaagaatatgtctttttttgattttggtctcatagaatct
cagcaagaaatggcaagcaagaggagaaaatgtgcaagccaataaagcat
tccctaacacgagggcgaatggcctgtaaatgggttgtgctctgctccag
cagtgcctggaggatggtaaattgaattcaagagtgtatgatcctattcc
tttattattagcatttcctttttttatcctgatgactcagggccctacac
attagtgttgaccatatttcatgagccacctccacttctagctattggtc
catactggccagtaaatattttgcacccagattcagttcttttccctgaa
ttgtaaggaacgaaaggaggtttgaaactataaattcttttttctccact
tcaggaataatgagaaacccaaagaggtattgggaagattgtattttcat
taaaaacagtaccttttaaccattggctttgcttgttgtttttgtttttg
gaacggttcttcatatgtagtctggctatctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_52897266_52898444
seq2: B6Ng01-286L14.b_49_1232

seq1  GGAATTCTTTCCTCATAATTCTGCCTCATATTTTGAAACATACAACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTTTCCTCATAATTCTGCCTCATATTTTGAAACATACAACTCTT  50

seq1  TAAACCGTACAACAAACCACTTGAAGTAGGTTTTGTTACTGAAGTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGTACAACAAACCACTTGAAGTAGGTTTTGTTACTGAAGTTTTAT  100

seq1  AAAGAATGTTTAAGAAAATAGAGATAACAAATCCATTTGAATTCACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTTTAAGAAAATAGAGATAACAAATCCATTTGAATTCACTTTC  150

seq1  CTTTATCAGCATATTTTTATACATACATATAAATGTGATACAAACTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAGCATATTTTTATACATACATATAAATGTGATACAAACTTCCT  200

seq1  AATTAACACTACTTTATAAATTAAGTTCTCTTAAAAGTATTTTTCTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACACTACTTTATAAATTAAGTTCTCTTAAAAGTATTTTTCTATTA  250

seq1  CATTAAAAATAGCATCATTTGGGGAAAGCAAGTTTTTTCCTTTAGTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAATAGCATCATTTGGGGAAAGCAAGTTTTTTCCTTTAGTACAC  300

seq1  AGAAGAGACTAATCCATCTAAGCACGTAAACACTTTTATACAGACTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGACTAATCCATCTAAGCACGTAAACACTTTTATACAGACTGAAT  350

seq1  GCATATGCGTACACCCTCCACACATGCAAACTGATTTTTAAAAGGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCGTACACCCTCCACACATGCAAACTGATTTTTAAAAGGCCAGA  400

seq1  AACCCTAGTGTGGTGGCTTAGACCTATAGTTCTAATGCACAGTTACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGTGTGGTGGCTTAGACCTATAGTTCTAATGCACAGTTACAGCC  450

seq1  TGAGGATTGCTAGCCTGGGACACCATGAAGCTAAAAAGCTTCTGTACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTGCTAGCCTGGGACACCATGAAGCTAAAAAGCTTCTGTACAGC  500

seq1  AAAGGACATCATGGTACTGACGAGACAGTCAATACGTTGCTGTATACGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACATCATGGTACTGACGAGACAGTCAATACGTTGCTGTATACGTC  550

seq1  TGACAGGGCTGGTACCTAGAATATACAGAGGGAAAAACACCTAACCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGCTGGTACCTAGAATATACAGAGGGAAAAACACCTAACCATGG  600

seq1  AAAAAAGAACTCAAAAATTGGAGCATGGCCGGGCGTGGTGGCTCACGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACTCAAAAATTGGAGCATGGCCGGGCGTGGTGGCTCACGCCT  650

seq1  TTAATCCCAGCACTAGAGAGGCAGCGGCAGGCAGATTTCTGAGTTCGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTAGAGAGGCAGCGGCAGGCAGATTTCTGAGTTCGAGG  700

seq1  CCAGTCCAGTGTATAGAGTGAGTGGCAGGACAGCCAGGGCTACACAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCAGTGTATAGAGTGAGTGGCAGGACAGCCAGGGCTACACAGAGA  750

seq1  AACCCTGTCTCAAAACAAACAAACAAACAAACAAACAAAATTGGAGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCAAAACAAACAAACAAACAAACAAACAAAATTGGAGCATG  800

seq1  GAAATATTTAGAG-TTCACAAAAGATAGGAAAACAAATACCTATGTGGAT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTAGAGTTTCACAAAAGATAGGAAAACAAATACCTATGTGGAT  850

seq1  GTGTGAAAAGGGAAACAATTAGTGTTGGTAGAAATAAAACTATGTATAGC  899
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  GTGTGAAAAGGGAAACAATTAGTGTTGGTAGAA--TAAACTATGTATAGC  898

seq1  CACTGTGGAAATCAGTGTGGCAATTCCTCAAAAGGCTAGAAACGAATCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGAAATCAGTGTGGCAATTCCTCAAAAGGCTAGAAACGAATCTA  948

seq1  TCTATGATCCCCCTGTCCCACACCTGGGCAGA-TACCCAAAGGATTCT-A  997
      |||||||||||||||| ||||||||||||||| ||||||||| ||||| |
seq2  TCTATGATCCCCCTGT-CCACACCTGGGCAGATTACCCAAAGAATTCTAA  997

seq1  TATCATACTCTAG-AGTGATTTGCTCAACTGCT-GTTC-TATTTATAGTA  1044
      ||||||||||||| ||||||||||||||||||| |||| |||||||||||
seq2  TATCATACTCTAGAAGTGATTTGCTCAACTGCTGGTTCTTATTTATAGTA  1047

seq1  ACCAAGAAATGGAAACAGCATAGATTTCCATCAACTGAAGAATGGA-TAA  1093
      ||| |||||||||||||||||||||||||||| ||||||  ||||| |||
seq2  ACC-AGAAATGGAAACAGCATAGATTTCCATC-ACTGAAAGATGGATTAA  1095

seq1  TGAAAATGTGGTG-CATATACA-CTGTGGACTATTATTTAA-CAATTAAG  1140
      |||||  |||||| |||||||| |||||||||||||||||| ||||||||
seq2  TGAAATGGTGGTGCCATATACACCTGTGGACTATTATTTAACCAATTAAG  1145

seq1  AAAAATGAAATTTGCAGGTA-ATGGTCAACAACAGTTATG  1179
       |||||||| ||  |||  | |||||||||||||||||||
seq2  -AAAATGAAGTTGCCAGTCATATGGTCAACAACAGTTATG  1184

seq1: chr12_53078681_53079730
seq2: B6Ng01-286L14.g_106_1161 (reverse)

seq1  TTCCAGAATAGCCAGACTACATAGAAAGACCCTGTTTCAAAAAACAAAAC  50
      |||||| ||||||||||||||||  |||| ||   ||| |||||||||| 
seq2  TTCCAG-ATAGCCAGACTACATATGAAGAACC--GTTCCAAAAACAAAAA  47

seq1  AAACAAGCAAAACCCAATGGTTTAAAAGTTACTGTTTTTTAATGAATATA  100
       ||||||| ||| ||||||| ||||||| ||||| ||||||||||| |||
seq2  CAACAAGC-AAAGCCAATGG-TTAAAAGGTACTG-TTTTTAATGAAAATA  94

seq1  C-ATC-TCCCATTACCTTCTTTGG--TTCTCATTATTCCTGAAGTGGAGA  146
      | ||| ||||| |||| |||||||  ||||||||||||||||||||||||
seq2  CAATCTTCCCAATACC-TCTTTGGGTTTCTCATTATTCCTGAAGTGGAGA  143

seq1  AAAAATGAATTTATAG-TTCAAA-CTCC-TTCGTTCCTAACAAATCAGGG  193
      ||||| |||||||||| |||||| |||| ||||||||| |||| ||||||
seq2  AAAAA-GAATTTATAGTTTCAAACCTCCTTTCGTTCCTTACAATTCAGGG  192

seq1  AAAAGAACTGAATCTGGGTGC-AAATATTTAACTGGCCAGTAT-GAACAA  241
      ||||||||||||||||||||| |||||||| |||||||||||| || |||
seq2  AAAAGAACTGAATCTGGGTGCAAAATATTT-ACTGGCCAGTATGGACCAA  241

seq1  TAGCTAGAAGT-GAAGTTGCTCATGAAATATGGTC-ACACTAATGTGTA-  288
      ||||||||||| || || ||||||||||||||||| ||||||||||||| 
seq2  TAGCTAGAAGTGGAGGTGGCTCATGAAATATGGTCAACACTAATGTGTAG  291

seq1  GGCCCTGAGTCATCAGGATAAAAAAAGGAAATGCTAATAAT-AAGGAATA  337
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCCCTGAGTCATCAGGATAAAAAAAGGAAATGCTAATAATAAAGGAATA  341

seq1  GAATCATACACTCTTGAATTCAATTTACCATCCTCCAGGCACTGCTGGAG  387
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATACACTCTTGAATTCAATTTACCATCCTCCAGGCACTGCTGGAG  391

seq1  CAGAGCACAACCCATTTACAGGCCATTCGCCCTCGTGTTA-GGAATGCTT  436
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGAGCACAACCCATTTACAGGCCATTCGCCCTCGTGTTAGGGAATGCTT  441

seq1  TATTGGCTTGCACATTTTCTCCTCTTGCTTGCCATTTCTTGCTGAGATTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTTGCACATTTTCTCCTCTTGCTTGCCATTTCTTGCTGAGATTC  491

seq1  TATGAGACCAAAATCAAAAAAAGACATATTCTTACTTATTATTTATGATA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACCAAAATCAAAAAAAGACATATTCTTACTTATTATTTATGATA  541

seq1  AAGATATTATGATCTTTTGGTGTTAGTTCTTATTTGTAAGTCTAGTAGAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTATGATCTTTTGGTGTTAGTTCTTATTTGTAAGTCTAGTAGAG  591

seq1  TTTTTCAGTAAATCTATCTGGTTCTGGACTTTTTTTGGCTAGATTATTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTAAATCTATCTGGTTCTGGACTTTTTTTGGCTAGATTATTTT  641

seq1  TTATTGCTATTTCTACCACATTGCTTCTTATTCTTACACTTCTTTTTTTT  686
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTATTGCTATTTCTACCACATTGCTTTTTATTCTTACACTTCTTTTTTTT  691

seq1  CCTTTTAAGACAGGGTGTCTCTAAAAGCTCTGGTGGTCCTGGAACTTACA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAGACAGGGTGTCTCTAAAAGCTCTGGTGGTCCTGGAACTTACA  741

seq1  ATGTGGATCAGGCTGACCTGGTACTCACAGAGATCTGCTTGTCTCTCCCT  786
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTGGATCAGGCTGACCTGGTACTCACAGAGATTTGCTTGTCTCTCCCT  791

seq1  CCCAAGAGCTGGGCTTAAAGGCATGCACCACCACACCTGGCCAATTTCAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGCTGGGCTTAAAGGCATGCACCACCACACCTGGCCAATTTCAT  841

seq1  TGCTTCTTATAGATCTGTCTAGATTGTATATTTCATCTTTGTTTAATTTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTATAGATCTGTCTAGATTGTATATTTCATCTTTGTTTAATTTT  891

seq1  GTTAGGAAATAGGCATAAAAATGCATCTGTTTAGCTTTTCTAATTTGGTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAAATAGGCATAAAAATGCATCTGTTTAGCTTTTCTAATTTGGTA  941

seq1  GAACATAGTATTTTTCTCTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTATTTTTCTCTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTT  991

seq1  TCTTTC-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  1035
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  1041

seq1  TGAGACAGGGTTTCT  1050
      |||||||||||||||
seq2  TGAGACAGGGTTTCT  1056