BAC Information

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BAC

Clone NameB6Ng01-286N11
Chromosome12 (Build37)
Map Location 34,687,682 - 34,812,961
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286N11.bB6Ng01-286N11.g
ACCGA084933GA084934
length1,1391,097
definitionB6Ng01-286N11.b B6Ng01-286N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,811,798 - 34,812,961)(34,687,682 - 34,688,782)
sequence
gaattccaactccaaaatctcttctgttcactgagttaaagaaagcctct
ttgaaatattttgacaacagcatatagggaagttgagtaccatgtcaagt
agtctagccatatgtatcattgaatgttttgagctattttgtcattaact
ctatgctcaaggtataagcataggagaaactgagaaagaggggtaaaaat
ataattgaggatgtactattagatatatttaattagtctggttactgatg
tgtccaatctatagcctgcaggttgcatgtgtcccagaataactataact
gtgccccaaaagtttgaacacttctgccagtgggtctacaaaaaaatatt
ttactagcagtgtgtgattgaagacaagagctaggaaagctatgtgagag
aaaatacaaagttctgtgtttgccttagtgaagtggggacgggaagaatt
cacactgatgggaagagctcccagagaggcagaaggatggaaacagtctt
ggacttgagaaataacagttctcagcagggagaaacagagacccctacaa
ccacagcaggaagggacagttggcaaaaatctgaggatatgttcctgcat
agttggttgagcagagatttttttaataagccaaaggaaatcaaatgtta
acaaaaatgtcactcaggagagatattttatgtttcataattcacagtat
gactaactagcatagtaagcaagaccaatgctaaatatgagtacattgtt
tccttgaatagtataatttgtgagaggcaaaacacagaataattcttcct
tatagaaaaaaaataaaaatcaaaaggtcctttaccactccagtttaaca
tgcaagtatagaactctgaaattttctgttattttcttctttttttctta
atcattttatttcttacatcccaaaagttgcccctcccaatgcttccttg
cagagtcttcccctcccatcactctgagagggtgctccctggtatcccca
atcctggtcatcaagtctctacagatcagcatcttccagtgagcagacag
caacctctgctatgtatgtggctgggacttggacaggctgtatatgttcc
ttggttgtgctcagtctcttggggctgagaggtcaaggt

gaattcttcctttactcaggagtacatgaacatagcgctctggctgccga
atggcacagtaattctgtgctggtgattgagaatcccatgtgatcccacg
caattgaccattagaaagcattcactctcaggtacaaatatccagtagta
gcttgtttttactgactatttaatagtgtaattgattggggagctcacta
ataacatgcacaccaagatcatgttaaaaatacacaagttccataagact
ccatgcatggtaggaggagactgtagaagagtcataagtctatggaatac
aaatcacagttcttcttttctcatagtaataaccttgtgtagacgtcctc
agtaacttccttcctttcctgcagttagttcttatcacacctgcttggag
aattgggtagatgatgccagtctgaaagcattgaggcactggggtgatgg
tgcacaccttcaatcccagcagttgggaggcagaggaagatggatctctg
taagtttgaggccagtcagatttacatagtgagttctaggctagccagag
ctacaggacaaaactctgtctcaaaaagcaagcaaacaaacaaagaaaaa
agaaaataaaagaaggtgaaagaaaaaaaaaaaacagaaaacaggtctaa
atgaagtcactatttggtatattttatcaggcatcacattatccatgctt
ctaaaatattctcttggaagatgaaacttttatggaattaggaaaggaaa
gatgtgcaattgggtgtggataattaaactagagcaagggaaagtgagcc
gaagagagactgacttcatttgtttgaagaaagtgtttaaaacataatga
tgtccatgtttaatgttagcagaaacatgaacagagaagttaaatagttc
tagtgttagtcaccattttccagtaatccaaaccctcttccttgtttcat
ggtggacatcagagttttcctgatagaagacagtgacctgagcacggaaa
tagattagcatgacacagaagagacatattgtgcatgttcataaacagaa
cgtataagttttaggcagttatgtgactttatactatgtagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34811798_34812961
seq2: B6Ng01-286N11.b_47_1185 (reverse)

seq1  ACCTT-TCCTCTCAGAGCCCCCAGAGACTGAGCCACCAACCAAAGAACAT  49
      |||||  ||||||  |||||| |||||||||||   ||||||| ||||||
seq2  ACCTTGACCTCTC--AGCCCCAAGAGACTGAGC--ACAACCAAGGAACAT  46

seq1  ATACAGGCTGGTCAAAGGTTCCCAG-CACATACATAGCAGAGGGTTGCCT  98
      |||||| || ||| |||  |||||| ||||||||||||||| ||||||  
seq2  ATACAGCCT-GTCCAAG--TCCCAGCCACATACATAGCAGA-GGTTGC--  90

seq1  TGTCTGGCCTCACTGGGAAAGGATGCCCTGAATCCTGTAGAGACTTGATG  148
      ||||||  ||||||||   | ||||  ||||   ||||||||||||||||
seq2  TGTCTG--CTCACTGG---AAGATG--CTGA--TCTGTAGAGACTTGATG  131

seq1  ACCCAGGATTGGGGGATACCCAGGGAGCACCCTCTCAGAGGTGAATGGGA  198
      | |||||||| ||||||| |||||||||||||||||||| ||| ||||||
seq2  A-CCAGGATT-GGGGATA-CCAGGGAGCACCCTCTCAGA-GTG-ATGGGA  176

seq1  GGGGGAAGAACTCTGCAAGGAAGCATTGGGAGGGGCAACTTTTGGGATGT  248
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -GGGGAAG-ACTCTGCAAGGAAGCATTGGGAGGGGCAACTTTTGGGATGT  224

seq1  AAAGAAATAAAATGATTAAGAAAAAAAGAAGAAAATAACAGAAAATTTCA  298
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGAAATAAAATGATTAAGAAAAAAAGAAGAAAATAACAGAAAATTTCA  273

seq1  GAGTTCTATACTTGCATGTTAAACTGGAGTGGTAAAGGACCTTTTGATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTATACTTGCATGTTAAACTGGAGTGGTAAAGGACCTTTTGATTT  323

seq1  TTATTTTTTTTCTATAAGGAAGAATTATTCTGTGTTTTGCCTCTCACAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTTCTATAAGGAAGAATTATTCTGTGTTTTGCCTCTCACAAA  373

seq1  TTATACTATTCAAGGAAACAATGTACTCATATTTAGCATTGGTCTTGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTATTCAAGGAAACAATGTACTCATATTTAGCATTGGTCTTGCTT  423

seq1  ACTATGCTAGTTAGTCATACTGTGAATTATGAAACATAAAATATCTCTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCTAGTTAGTCATACTGTGAATTATGAAACATAAAATATCTCTCC  473

seq1  TGAGTGACATTTTTGTTAACATTTGATTTCCTTTGGCTTATTAAAAAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACATTTTTGTTAACATTTGATTTCCTTTGGCTTATTAAAAAAAT  523

seq1  CTCTGCTCAACCAACTATGCAGGAACATATCCTCAGATTTTTGCCAACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCAACCAACTATGCAGGAACATATCCTCAGATTTTTGCCAACTG  573

seq1  TCCCTTCCTGCTGTGGTTGTAGGGGTCTCTGTTTCTCCCTGCTGAGAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTGCTGTGGTTGTAGGGGTCTCTGTTTCTCCCTGCTGAGAACT  623

seq1  GTTATTTCTCAAGTCCAAGACTGTTTCCATCCTTCTGCCTCTCTGGGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCTCAAGTCCAAGACTGTTTCCATCCTTCTGCCTCTCTGGGAGC  673

seq1  TCTTCCCATCAGTGTGAATTCTTCCCGTCCCCACTTCACTAAGGCAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATCAGTGTGAATTCTTCCCGTCCCCACTTCACTAAGGCAAACA  723

seq1  CAGAACTTTGTATTTTCTCTCACATAGCTTTCCTAGCTCTTGTCTTCAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTTGTATTTTCTCTCACATAGCTTTCCTAGCTCTTGTCTTCAAT  773

seq1  CACACACTGCTAGTAAAATATTTTTTTGTAGACCCACTGGCAGAAGTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTGCTAGTAAAATATTTTTTTGTAGACCCACTGGCAGAAGTGTT  823

seq1  CAAACTTTTGGGGCACAGTTATAGTTATTCTGGGACACATGCAACCTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTTGGGGCACAGTTATAGTTATTCTGGGACACATGCAACCTGCA  873

seq1  GGCTATAGATTGGACACATCAGTAACCAGACTAATTAAATATATCTAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGATTGGACACATCAGTAACCAGACTAATTAAATATATCTAATA  923

seq1  GTACATCCTCAATTATATTTTTACCCCTCTTTCTCAGTTTCTCCTATGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCCTCAATTATATTTTTACCCCTCTTTCTCAGTTTCTCCTATGCT  973

seq1  TATACCTTGAGCATAGAGTTAATGACAAAATAGCTCAAAACATTCAATGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTGAGCATAGAGTTAATGACAAAATAGCTCAAAACATTCAATGA  1023

seq1  TACATATGGCTAGACTACTTGACATGGTACTCAACTTCCCTATATGCTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGGCTAGACTACTTGACATGGTACTCAACTTCCCTATATGCTGT  1073

seq1  TGTCAAAATATTTCAAAGAGGCTTTCTTTAACTCAGTGAACAGAAGAGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATATTTCAAAGAGGCTTTCTTTAACTCAGTGAACAGAAGAGAT  1123

seq1  TTTGGAGTTGGAATTC  1164
      ||||||||||||||||
seq2  TTTGGAGTTGGAATTC  1139


seq1: chr12_34687682_34688782
seq2: B6Ng01-286N11.g_69_1165

seq1  GAATTCTTCCTTTACTCAGGAGTACATGAACATAGCGCTCTGGCTGCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTTACTCAGGAGTACATGAACATAGCGCTCTGGCTGCCGA  50

seq1  ATGGCACAGTAATTCTGTGCTGGTGATTGAGAATCCCATGTGATCCCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGTAATTCTGTGCTGGTGATTGAGAATCCCATGTGATCCCACG  100

seq1  CAATTGACCATTAGAAAGCATTCACTCTCAGGTACAAATATCCAGTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGACCATTAGAAAGCATTCACTCTCAGGTACAAATATCCAGTAGTA  150

seq1  GCTTGTTTTTACTGACTATTTAATAGTGTAATTGATTGGGGAGCTCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTTACTGACTATTTAATAGTGTAATTGATTGGGGAGCTCACTA  200

seq1  ATAACATGCACACCAAGATCATGTTAAAAATACACAAGTTCCATAAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGCACACCAAGATCATGTTAAAAATACACAAGTTCCATAAGACT  250

seq1  CCATGCATGGTAGGAGGAGACTGTAGAAGAGTCATAAGTCTATGGAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATGGTAGGAGGAGACTGTAGAAGAGTCATAAGTCTATGGAATAC  300

seq1  AAATCACAGTTCTTCTTTTCTCATAGTAATAACCTTGTGTAGACGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGTTCTTCTTTTCTCATAGTAATAACCTTGTGTAGACGTCCTC  350

seq1  AGTAACTTCCTTCCTTTCCTGCAGTTAGTTCTTATCACACCTGCTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTCCTTCCTTTCCTGCAGTTAGTTCTTATCACACCTGCTTGGAG  400

seq1  AATTGGGTAGATGATGCCAGTCTGAAAGCATTGAGGCACTGGGGTGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTAGATGATGCCAGTCTGAAAGCATTGAGGCACTGGGGTGATGG  450

seq1  TGCACACCTTCAATCCCAGCAGTTGGGAGGCAGAGGAAGATGGATCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCTTCAATCCCAGCAGTTGGGAGGCAGAGGAAGATGGATCTCTG  500

seq1  TAAGTTTGAGGCCAGTCAGATTTACATAGTGAGTTCTAGGCTAGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGAGGCCAGTCAGATTTACATAGTGAGTTCTAGGCTAGCCAGAG  550

seq1  CTACAGGACAAAACTCTGTCTCAAAAAGCAAGCAAACAAACAAAGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGACAAAACTCTGTCTCAAAAAGCAAGCAAACAAACAAAGAAAAA  600

seq1  AGAAAATAAAAGAAGGTGAAAGAAAAAAAAAAAACAGAAAACAGGTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAAAGAAGGTGAAAGAAAAAAAAAAAACAGAAAACAGGTCTAA  650

seq1  ATGAAGTCACTATTTGGTATATTTTATCAGGCATCACATTATCCATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCACTATTTGGTATATTTTATCAGGCATCACATTATCCATGCTT  700

seq1  CTAAAATATTCTCTTGGAAGATGAAACTTTTATGGAATTAGGAAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATTCTCTTGGAAGATGAAACTTTTATGGAATTAGGAAAGGAAA  750

seq1  GATGTGCAATTGGGTGTGGATAATTAAACTAGAGCAAGGGAAAGTGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCAATTGGGTGTGGATAATTAAACTAGAGCAAGGGAAAGTGAGCC  800

seq1  GAAGAGAGACTGACTTCATTTGTTTGAAGAAAGTGTTTAAAACATAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGACTGACTTCATTTGTTTGAAGAAAGTGTTTAAAACATAATGA  850

seq1  TGTCCATGTTTAATGTTAGCAG-AACATGAACAGAGAAGTTAAATAGTTC  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCCATGTTTAATGTTAGCAGAAACATGAACAGAGAAGTTAAATAGTTC  900

seq1  TAGTGTTAGTCACCA-TTTCCAGTAATCCAAACCCTCTTTCCTTGTTTCA  948
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TAGTGTTAGTCACCATTTTCCAGTAATCCAAACCCTC-TTCCTTGTTTCA  949

seq1  T-GTGGACAATCAAGAGTTTTCCCGGATTAGAGACAGTGACCCTGAGCAC  997
      | |||||| ||| |||||||| || |||   ||||||||| |||||||||
seq2  TGGTGGAC-ATC-AGAGTTTT-CCTGATAGAAGACAGTGA-CCTGAGCAC  995

seq1  GGAAATAGATTAGCATGACACAGAAGAGACCATATTGTGCATG-TCATAA  1046
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  GGAAATAGATTAGCATGACACAGAAGAGA-CATATTGTGCATGTTCATAA  1044

seq1  ACAAGGACAGTAATAAATTTTAGGGCAG-TATGTGAC-TTATACTATGTA  1094
      |||  ||  || |||| ||||| ||||| |||||||| ||||||||||||
seq2  ACA--GAACGT-ATAAGTTTTA-GGCAGTTATGTGACTTTATACTATGTA  1090

seq1  GAAAAAA  1101
      |||||||
seq2  GAAAAAA  1097


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