BAC Information

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BAC

Clone NameB6Ng01-287I06
Chromosome12 (Build37)
Map Location 63,039,257 - 63,164,071
singlet/doubletdoublet
Overlap geneLOC100040403
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707
Downstream geneLOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287I06.bB6Ng01-287I06.g
ACCGA085418GA085419
length1,1111,149
definitionB6Ng01-287I06.b B6Ng01-287I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,163,037 - 63,164,071)(63,039,257 - 63,040,454)
sequence
gaattcattgttgtcattcaatatattctgaaaagctagacattgttaat
tttatgatataaaccatccttatctttgtcaatttatccagtgatgctaa
gaaccagcatcattattttccttatttttccacaaactataaagtgttta
tatacagtcactgaatccattgactctctcacaatttttaagtcagggta
ttcaaatgtatctgtcaccttaagttcataaaacagttcacacaatggaa
tttgtgtattctttaaactcccaagagaggcttcttcggtaactgtatgt
gttggcaaattggaaaacttaccccagatacttaaaatattcatcattat
acttttattgctctagaagactggctcttagcttttctaatgctgcaacc
ctttaatacaattcctcatgttgtggcgaacctcaaaataaaattcttta
ttaattatttaataaaattaagattatatcatttcataactataatcttg
ctactgttatgaatcataatgtaagtgattgatatgcaaggtatctgata
tgcaatgtcacagtggacatgacagacaaggtgaaaacgactgctacaga
atcacctctgatatcaaaatttgtattactcagggtaactgttcagactc
tcatcacatatgcatatgaaatttattagaatttattagaatggcttatg
ctccagttaatccaacaatggatgctaccaatggaaggtccaaggattca
atagttttttgtctacaagtctagatgtctcaaatgatatttggtaattt
gagagaatcacaagacagtaaggtctaatgccagtaaagtgatggacttg
ctaggaatattgaaagaaaggaggcaaagagtcactaacattccttattc
caagtcctttatatagactaccagcacaagctgtagtccagactaaagat
gaatcttcccacctcatgaggtttagattaaaccatcaataactgaattg
acttcagctcactcacaattatacaacccatacctaactgtgcagtgtcc
agacctgagactacataaacttggactgagcataagactaatgctatgtt
ctactaacaga
gaattcaatgtcatgtgtctgtgctttgtgtcaggagtttctttggcaag
aaacaggaaagtttttagtaggaatgcaagttttgactttcagatttcta
ctagactccataagaaatgcatcatccttgaagttagcttgcctcttttt
gtgttataatcactgagttattttttttaaatcaaacagagtatatacca
aatgaaccttctacagtgtacaggggtctattcttaatgtattgttatta
gcaaaaggaactactgtcctttttaatctaaatgatttgagtgctttaac
attaccaaataaaatgggcaatttataaagtcagtctagctaaatgtttt
taacatatctgaacatcagaatttcctataaatttcaaagtatatttaca
cccagctgtctctccatatcaaataaatttgagcttctatatatctgggg
atctgacataacaagactcccttggtgactttaaactgtagcctaggcta
gaattactgctcaaagccttatttttttatctttaagatggtattggctc
taactactaaggccatcattgcaggtctattttaagaatcaaaagtaaat
ggatgtcagaaacataacatgatgcctggaacgttataaataattcatat
ctctcactctctaactgcactataaatacaattaaggggaacattatatc
tttttcactgtttcctgtatggcacagagaaggtacttaaaagtattttt
ttggttcaatgtatcacctgaactgtcctttagggaacaaaatatgctag
tgtttaaatttgttcaattacaaaactccttattaaaaatatttttgtgt
aactgattgtttttcccttccagctgacacagtccctcattctctctttt
cttttctttctttctttcttttttttttttttttgattttctgagaaaag
gtttcttttgtgcatccctgctgtctgtacctcactctgtagaacatagc
acctcattctacattctttaaatgctatccatatacactcccaacttact
ctctttcccactggcacctattccctcctccattcttcctccggatccta
gttttatctcctgactcgacgttcaagtcggtcatctccatctttcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63163037_63164071
seq2: B6Ng01-287I06.b_130_1155 (reverse)

seq1  TCTGTTAGTAGAACATTAGCATTTAGTCTTATGCTCAGTCCCAGGTTTAT  50
      ||||||||||||||| ||||| ||||||||||||||||| ||| ||||||
seq2  TCTGTTAGTAGAACA-TAGCA-TTAGTCTTATGCTCAGT-CCAAGTTTAT  47

seq1  GTAGTCTCAGGTTCTTGGACACTTGCACAGTTTAGGGTATGGGTTGTAT-  99
      ||||||||||||   ||||||| |||||||||   |||||||||||||| 
seq2  GTAGTCTCAGGT--CTGGACAC-TGCACAGTT--AGGTATGGGTTGTATA  92

seq1  ATTGTGGAGTGAGCCTGAAGTCAATTCAGTTATTGATGGTTTAATCTAAA  149
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTGT-GAGTGAG-CTGAAGTCAATTCAGTTATTGATGGTTTAATCTAAA  140

seq1  CCTCATGAGGTGGGAAGATTCATCTTTAGTCTGGACTACAGCTTGTGCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGAGGTGGGAAGATTCATCTTTAGTCTGGACTACAGCTTGTGCTG  190

seq1  GTAGTCTATATAAAGGACTTGGAATAAGGAATGTTAGTGACTCTTTGCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTATATAAAGGACTTGGAATAAGGAATGTTAGTGACTCTTTGCCT  240

seq1  CCTTTCTTTCAATATTCCTAGCAAGTCCATCACTTTACTGGCATTAGACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTCAATATTCCTAGCAAGTCCATCACTTTACTGGCATTAGACC  290

seq1  TTACTGTCTTGTGATTCTCTCAAATTACCAAATATCATTTGAGACATCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCTTGTGATTCTCTCAAATTACCAAATATCATTTGAGACATCTA  340

seq1  GACTTGTAGACAAAAAACTATTGAATCCTTGGACCTTCCATTGGTAGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTAGACAAAAAACTATTGAATCCTTGGACCTTCCATTGGTAGCAT  390

seq1  CCATTGTTGGATTAACTGGAGCATAAGCCATTCTAATAAATTCTAATAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTGGATTAACTGGAGCATAAGCCATTCTAATAAATTCTAATAAA  440

seq1  TTTCATATGCATATGTGATGAGAGTCTGAACAGTTACCCTGAGTAATACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGCATATGTGATGAGAGTCTGAACAGTTACCCTGAGTAATACA  490

seq1  AATTTTGATATCAGAGGTGATTCTGTAGCAGTCGTTTTCACCTTGTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATATCAGAGGTGATTCTGTAGCAGTCGTTTTCACCTTGTCTGT  540

seq1  CATGTCCACTGTGACATTGCATATCAGATACCTTGCATATCAATCACTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCACTGTGACATTGCATATCAGATACCTTGCATATCAATCACTTA  590

seq1  CATTATGATTCATAACAGTAGCAAGATTATAGTTATGAAATGATATAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGATTCATAACAGTAGCAAGATTATAGTTATGAAATGATATAATC  640

seq1  TTAATTTTATTAAATAATTAATAAAGAATTTTATTTTGAGGTTCGCCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTATTAAATAATTAATAAAGAATTTTATTTTGAGGTTCGCCACA  690

seq1  ACATGAGGAATTGTATTAAAGGGTTGCAGCATTAGAAAAGCTAAGAGCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGAATTGTATTAAAGGGTTGCAGCATTAGAAAAGCTAAGAGCCA  740

seq1  GTCTTCTAGAGCAATAAAAGTATAATGATGAATATTTTAAGTATCTGGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAGAGCAATAAAAGTATAATGATGAATATTTTAAGTATCTGGGG  790

seq1  TAAGTTTTCCAATTTGCCAACACATACAGTTACCGAAGAAGCCTCTCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTCCAATTTGCCAACACATACAGTTACCGAAGAAGCCTCTCTTG  840

seq1  GGAGTTTAAAGAATACACAAATTCCATTGTGTGAACTGTTTTATGAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTAAAGAATACACAAATTCCATTGTGTGAACTGTTTTATGAACTT  890

seq1  AAGGTGACAGATACATTTGAATACCCTGACTTAAAAATTGTGAGAGAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACAGATACATTTGAATACCCTGACTTAAAAATTGTGAGAGAGTC  940

seq1  AATGGATTCAGTGACTGTATATAAACACTTTATAGTTTGTGGAAAAATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTCAGTGACTGTATATAAACACTTTATAGTTTGTGGAAAAATAA  990

seq1  GGAAAATAATGATGCTGGTTCTTAGCATCACTGGAT  1035
      ||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAATGATGCTGGTTCTTAGCATCACTGGAT  1026

seq1: chr12_63039257_63040454
seq2: B6Ng01-287I06.g_64_1212

seq1  GAATTCAATGTCATGTGTCTGTGCTTTGTGTCAGGAGTTTCTTTGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCATGTGTCTGTGCTTTGTGTCAGGAGTTTCTTTGGCAAG  50

seq1  AAACAGGAAAGTTTTTAGTAGGAATGCAAGTTTTGACTTTCAGATTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAAAGTTTTTAGTAGGAATGCAAGTTTTGACTTTCAGATTTCTA  100

seq1  CTAGACTCCATAAGAAATGCATCATCCTTGAAGTTAGCTTGCCTCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCCATAAGAAATGCATCATCCTTGAAGTTAGCTTGCCTCTTTTT  150

seq1  GTGTTATAATCACTGAGTTATTTTTTTTAAATCAAACAGAGTATATACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATAATCACTGAGTTATTTTTTTTAAATCAAACAGAGTATATACCA  200

seq1  AATGAACCTTCTACAGTGTACAGGGGTCTATTCTTAATGTATTGTTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCTTCTACAGTGTACAGGGGTCTATTCTTAATGTATTGTTATTA  250

seq1  GCAAAAGGAACTACTGTCCTTTTTAATCTAAATGATTTGAGTGCTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGAACTACTGTCCTTTTTAATCTAAATGATTTGAGTGCTTTAAC  300

seq1  ATTACCAAATAAAATGGGCAATTTATAAAGTCAGTCTAGCTAAATGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAAATAAAATGGGCAATTTATAAAGTCAGTCTAGCTAAATGTTTT  350

seq1  TAACATATCTGAACATCAGAATTTCCTATAAATTTCAAAGTATATTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATCTGAACATCAGAATTTCCTATAAATTTCAAAGTATATTTACA  400

seq1  CCCAGCTGTCTCTCCATATCAAATAAATTTGAGCTTCTATATATCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTCTCTCCATATCAAATAAATTTGAGCTTCTATATATCTGGGG  450

seq1  ATCTGACATAACAAGACTCCCTTGGTGACTTTAAACTGTAGCCTAGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACATAACAAGACTCCCTTGGTGACTTTAAACTGTAGCCTAGGCTA  500

seq1  GAATTACTGCTCAAAGCCTTATTTTTTTATCTTTAAGATGGTATTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTGCTCAAAGCCTTATTTTTTTATCTTTAAGATGGTATTGGCTC  550

seq1  TAACTACTAAGGCCATCATTGCAGGTCTATTTTAAGAATCAAAAGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTAAGGCCATCATTGCAGGTCTATTTTAAGAATCAAAAGTAAAT  600

seq1  GGATGTCAGAAACATAACATGATGCCTGGAACGTTATAAATAATTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGAAACATAACATGATGCCTGGAACGTTATAAATAATTCATAT  650

seq1  CTCTCACTCTCTAACTGCACTATAAATACAATTAAGGGGAACATTATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTCTCTAACTGCACTATAAATACAATTAAGGGGAACATTATATC  700

seq1  TTTTTCACTGTTTCCTGTATGGCACAGAGAAGGTACTTAAAAGTATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTGTTTCCTGTATGGCACAGAGAAGGTACTTAAAAGTATTTTT  750

seq1  TTGGTTCAATGTATCACCTGAACTGTCCTTTAGGGAACAAAATATGCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAATGTATCACCTGAACTGTCCTTTAGGGAACAAAATATGCTAG  800

seq1  TGTTTAAATTTGTTCAATTACAAAACTCCTTATTAAAAATATTTTTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATTTGTTCAATTACAAAACTCCTTATTAAAAATATTTTTGTGT  850

seq1  AACTGATTGTTTTTCCCTTCCAGCTGACACAGTCCCTCATTCTTCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||        
seq2  AACTGATTGTTTTTCCCTTCCAGCTGACACAGTCCCTCATTC--------  892

seq1  TTTCTTTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGAT  950
      | ||||||||||||||||||||     ||| |||||||||||||||||| 
seq2  TCTCTTTTCTTTTCTTTCTTTC-----TTTCTTTTTTTTTTTTTTTTGA-  936

seq1  TTTTCTGAGACAGGGTTTC-TTTGTGCATCCCTGGCTGTCCTGGAACTCA  999
      |||||||||| | |||||| ||||||||||||| ||||| ||| | ||||
seq2  TTTTCTGAGAAAAGGTTTCTTTTGTGCATCCCT-GCTGT-CTGTACCTCA  984

seq1  CTCTGTAGACCATAGCACCTCATTCTTACATTCCTTTAAATGCTATTCAT  1049
      ||||||||| ||||||||||||||| |||||| ||||||||||||| || 
seq2  CTCTGTAGAACATAGCACCTCATTC-TACATT-CTTTAAATGCTATCCA-  1031

seq1  TATACCACTCCACAC-TACTCTCTTTCCCCAACTGCACCCTAATCTCTTC  1098
      |||| ||||||  || |||||||||||||  ||||   |||| ||    |
seq2  TATA-CACTCCCAACTTACTCTCTTTCCC--ACTGGCACCTATTC----C  1074

seq1  TTCCTCTATTTCTTTTCCTCTCCCTGTTTTCTATGTTTTTATTCTTTCCT  1148
       ||||| ||   | |||||    | |  | ||| ||||            
seq2  CTCCTCCAT---TCTTCCT----CCGGATCCTA-GTTT------------  1104

seq1  CTGTCTTCTG--TCCTCTTTCCAACTTCCTGCTCATCTCTCCATCTTTCA  1196
       | ||| |||  ||  | || ||| |    | |||  |||||||||||||
seq2  -TATCTCCTGACTCGACGTT-CAAGT---CGGTCA--TCTCCATCTTTCA  1147

seq1  GT  1198
      ||
seq2  GT  1149