BAC Information

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BAC

Clone NameB6Ng01-288B02
Chromosome12 (Build37)
Map Location 17,994,663 - 18,142,320
singlet/doubletdoublet
Overlap geneLOC673341, EG245297
Upstream geneRock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525
Downstream geneLOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160, 5730507C01Rik, EG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288B02.bB6Ng01-288B02.g
ACCGA085827GA085828
length1,127887
definitionB6Ng01-288B02.b B6Ng01-288B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,141,198 - 18,142,320)(17,994,663 - 17,995,548)
sequence
gaattctccaccagaacttcagtgaagggccagtgaagacattgttggta
gctcgccccctacaggacagtgaaatcctccagggcactttagagggaaa
agatgtagggacagttagttggggatgcaatgatagggaccatgttctgt
gtgtgcgccctctcacagccttaagaagccaggggtaaaggcaggtgttt
tgcatagggagttgaccatggtacaagccgaatgggaattcaaacccatt
accttcgacttggaagaatatttcaacccctagtaagcatcgtgttccct
aagcttgtacaattagggacactcccagttacttgatgacagttttaggg
tggtagggcaggctttaacctgagaaaatcatagaatgcactgatgtgct
gtcagaagtgagggatacccaagagaaccagaggtagagcataagggggg
tattgtatctgatggttctcagagagtactccaacccatagctgattgat
cacagacacaactgggccaataaatcgtctgaattaggacattttcgtct
atatctcattcagaaattctcagctgtatttttaaaacccaaaggttctc
aagacactagtcaaaaatcacaccctctaactccctaggcaagaggcatg
gttactgctgctgccaacaatacagcctagagaaactttacaaaaacctt
ttgtgtgtctgaaaaggagggaatgtgagggacattgtaaacccaacatg
ggaaataaaagtggtctcctactgccataggacagtagactactcaatct
ttttaaggctcccatgtacaaatctgctgtatgaggtggcagctgggttc
agacatttatgtattggcttctggtattttaccagcactgcgtgtgaata
agttcagccttcaaaaatagctgtgccagtgggtagctttttattcctgt
gataggcattaaatttcaattccaaacctctgcactctctgccaactttc
caccattgtgaacatcccttcatttagtgtctcaggtaccacacttatct
cagcatgtattaactcgaagggtattgtgtatggtaacagctgtcttcac
aatgcaatttctgattcctctggcctc
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaaa
aaaccaaaaaaccaaaaaaacaaacaaaaaaaaacaaaacaaaaaccaaa
aaacaacccaaaaccaaaaccaaaaccaaaaccccaaaacaactatctgt
aaccccagttcaaggggatctggcaccctctctggtctttgggcacacca
gcaaaaaactgacccccagatctaagtttccatctgtgttataattgtgt
ggtgccaaatccttcaatgcctctgacccaaagcacaaaccgtgaggtga
gtgacccatacatgtgactgtctctcaccttggggtgtaaatggcttgct
ttcacaacattatctgggggcaagtactctatgaggtggaggtgaaagtc
ccagtgacatttccctgttcacatcacaggtccttgtgggtgtccctatt
ttattgcattgtttaccacaaagttcctttaaggctcagacctgttcatt
ccaagagtaatcatttacaagttaactgcaagcaaactggaaatgtctgt
gttaaatcagccaagcctccagaaaattccggagctgagaacattacctt
ttcccttggctggacagtgagaaacctcaggttcttgggaattactagag
gcagaacattcctctggaaaatgggctgttagccaatcttactgggcacc
aggcatgggctttttctatccttcttcctttggttgccttagctgaatcg
agtaaaggatgaagcttatgttgcctacaggattagaggtttctgtcttt
tggtcttgctggtttggggactttaggtgaggcaggacattgtggtggaa
gaatgcagggggaggtgagagatgcttacgcatgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_18141198_18142320
seq2: B6Ng01-288B02.b_45_1171 (reverse)

seq1  GAGG-CAGAGGGATCAGAAAATTGCCTTGTGAAGGACAGCCTGTACCATA  49
      |||| |||||| ||||| ||||||| ||||||| ||||||   |||||| 
seq2  GAGGCCAGAGGAATCAG-AAATTGCATTGTGAA-GACAGCTGTTACCAT-  47

seq1  ACACAATACCC-TCGAGTT-ATACATGCTGAGATAGGTGT-GTCCCTGAG  96
      ||||||||||| ||||||| ||||||||||||||| |||| || ||||||
seq2  ACACAATACCCTTCGAGTTAATACATGCTGAGATAAGTGTGGTACCTGAG  97

seq1  ACACTAAATGGAAGGATGTTCACAATGGTGGAAAG-TGGCAGAGAGTTGC  145
      |||||||||| | |||||||||||||||||||||| |||||||||| |||
seq2  ACACTAAATGAAGGGATGTTCACAATGGTGGAAAGTTGGCAGAGAG-TGC  146

seq1  AGAGTTTTGGGATTGAAATTTATTGCCTATCACAGGAAT-AAAAGCTACC  194
      |||| ||||| ||||||||||| |||||||||||||||| ||||||||||
seq2  AGAGGTTTGGAATTGAAATTTAATGCCTATCACAGGAATAAAAAGCTACC  196

seq1  CACTGGCACAGCTATTTTTGAAGGCTGAACTTATTCACACGCAGTGCTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCACAGCTATTTTTGAAGGCTGAACTTATTCACACGCAGTGCTGG  246

seq1  TAAAATACCAGAAGCC-ATACAT-AATGTCTGAACCCAGCTGCCACCTCA  292
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TAAAATACCAGAAGCCAATACATAAATGTCTGAACCCAGCTGCCACCTCA  296

seq1  TACAGCAGATTTGTACATGGGAGCCTTAAAAAGATTGAGTAGTCTACTGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGATTTGTACATGGGAGCCTTAAAAAGATTGAGTAGTCTACTGT  346

seq1  CCTATGGCAGTAGGAGACCACTTTTATTTCCCATGTTGGGTTTACAATGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCAGTAGGAGACCACTTTTATTTCCCATGTTGGGTTTACAATGT  396

seq1  CCCTCACATTCCCTCCTTTTCAGACACACAAAAGGTTTTTGTAAAGTTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACATTCCCTCCTTTTCAGACACACAAAAGGTTTTTGTAAAGTTTC  446

seq1  TCTAGGCTGTATTGTTGGCAGCAGCAGTAACCATGCCTCTTGCCTAGGGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTGTATTGTTGGCAGCAGCAGTAACCATGCCTCTTGCCTAGGGA  496

seq1  GTTAGAGGGTGTGATTTTTGACTAGTGTCTTGAGAACCTTTGGGTTTTAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGGTGTGATTTTTGACTAGTGTCTTGAGAACCTTTGGGTTTTAA  546

seq1  AAATACAGCTGAGAATTTCTGAATGAGATATAGACGAAAATGTCCTAATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGCTGAGAATTTCTGAATGAGATATAGACGAAAATGTCCTAATT  596

seq1  CAGACGATTTATTGGCCCAGTTGTGTCTGTGATCAATCAGCTATGGGTTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGATTTATTGGCCCAGTTGTGTCTGTGATCAATCAGCTATGGGTTG  646

seq1  GAGTACTCTCTGAGAACCATCAGATACAATACCCCCCTTATGCTCTACCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTCTCTGAGAACCATCAGATACAATACCCCCCTTATGCTCTACCT  696

seq1  CTGGTTCTCTTGGGTATCCCTCACTTCTGACAGCACATCAGTGCATTCTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTCTTGGGTATCCCTCACTTCTGACAGCACATCAGTGCATTCTA  746

seq1  TGATTTTCTCAGGTTAAAGCCTGCCCTACCACCCTAAAACTGTCATCAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTCAGGTTAAAGCCTGCCCTACCACCCTAAAACTGTCATCAAG  796

seq1  TAACTGGGAGTGTCCCTAATTGTACAAGCTTAGGGAACACGATGCTTACT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGAGTGTCCCTAATTGTACAAGCTTAGGGAACACGATGCTTACT  846

seq1  AGGGGTTGAAATATTCTTCCAAGTCGAAGGTAATGGGTTTGAATTCCCAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGAAATATTCTTCCAAGTCGAAGGTAATGGGTTTGAATTCCCAT  896

seq1  TCGGCTTGTACCATGGTCAACTCCCTATGCAAAACACCTGCCTTTACCCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTGTACCATGGTCAACTCCCTATGCAAAACACCTGCCTTTACCCC  946

seq1  TGGCTTCTTAAGGCTGTGAGAGGGCGCACACACAGAACATGGTCCCTATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTAAGGCTGTGAGAGGGCGCACACACAGAACATGGTCCCTATC  996

seq1  ATTGCATCCCCAACTAACTGTCCCTACATCTTTTCCCTCTAAAGTGCCCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCCCCAACTAACTGTCCCTACATCTTTTCCCTCTAAAGTGCCCT  1046

seq1  GGAGGATTTCACTGTCCTGTAGGGGGCGAGCTACCAACAATGTCTTCACT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTTCACTGTCCTGTAGGGGGCGAGCTACCAACAATGTCTTCACT  1096

seq1  GGCCCTTCACTGAAGTTCTGGTGGAGAATTC  1123
      |||||||||||||||||||||||||||||||
seq2  GGCCCTTCACTGAAGTTCTGGTGGAGAATTC  1127

seq1: chr12_17994663_17995548
seq2: B6Ng01-288B02.g_68_954

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50

seq1  AAACCAAAAAACCAAAAAAACAAACAAAAAAAAACAAAACAAAAACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAACCAAAAAAACAAACAAAAAAAAACAAAACAAAAACCAAA  100

seq1  AAACAACCCAAAACCAAAACCAAAACCAAAACCCCAAAACAACTATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCAAAACCAAAACCAAAACCAAAACCCCAAAACAACTATCTGT  150

seq1  AACCCCAGTTCAAGGGGATCTGGCACCCTCTCTGGTCTTTGGGCACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGTTCAAGGGGATCTGGCACCCTCTCTGGTCTTTGGGCACACCA  200

seq1  GCAAAAAACTGACCCCCAGATCTAAGTTTCCATCTGTGTTATAATTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAACTGACCCCCAGATCTAAGTTTCCATCTGTGTTATAATTGTGT  250

seq1  GGTGCCAAATCCTTCAATGCCTCTGACCCAAAGCACAAACCGTGAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAAATCCTTCAATGCCTCTGACCCAAAGCACAAACCGTGAGGTGA  300

seq1  GTGACCCATACATGTGACTGTCTCTCACCTTGGGGTGTAAATGGCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCATACATGTGACTGTCTCTCACCTTGGGGTGTAAATGGCTTGCT  350

seq1  TTCACAACATTATCTGGGGGCAAGTACTCTATGAGGTGGAGGTGAAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACATTATCTGGGGGCAAGTACTCTATGAGGTGGAGGTGAAAGTC  400

seq1  CCAGTGACATTTCCCTGTTCACATCACAGGTCCTTGTGGGTGTCCCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACATTTCCCTGTTCACATCACAGGTCCTTGTGGGTGTCCCTATT  450

seq1  TTATTGCATTGTTTACCACAAAGTTCCTTTAAGGCTCAGACCTGTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCATTGTTTACCACAAAGTTCCTTTAAGGCTCAGACCTGTTCATT  500

seq1  CCAAGAGTAATCATTTACAAGTTAACTGCAAGCAAACTGGAAATGTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGTAATCATTTACAAGTTAACTGCAAGCAAACTGGAAATGTCTGT  550

seq1  GTTAAATCAGCCAAGCCTCCAGAAAATTCCGGAGCTGAGAACATTACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCAGCCAAGCCTCCAGAAAATTCCGGAGCTGAGAACATTACCTT  600

seq1  TTCCCTTGGCTGGACAGTGAGAAACCTCAGGTTCTTGGGAATTACTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGGCTGGACAGTGAGAAACCTCAGGTTCTTGGGAATTACTAGAG  650

seq1  GCAGAACATTCCTCTGGAAAATGGGCTGTTAGCCAATCTTACTGGGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACATTCCTCTGGAAAATGGGCTGTTAGCCAATCTTACTGGGCACC  700

seq1  AGGCATGGGC-TTTTCTATCCTTCTTCCTTTGGTTGCCTTAGCTGAATCG  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGGCTTTTTCTATCCTTCTTCCTTTGGTTGCCTTAGCTGAATCG  750

seq1  AGTAAAGGATGAAGCTTATGTTGCCTACAGGATTAGAGGTTTCTGTCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGATGAAGCTTATGTTGCCTACAGGATTAGAGGTTTCTGTCTTT  800

seq1  TGGTCTTGCTGGTTTGGGGACTTTAGGTGAGGCAAGACATTGTGGTGGAA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGTCTTGCTGGTTTGGGGACTTTAGGTGAGGCAGGACATTGTGGTGGAA  850

seq1  GAATGCA-GGGGAGGGGAGAGATGCTTACAGCATGACA  886
      ||||||| ||||||| ||||||||||||| ||||||||
seq2  GAATGCAGGGGGAGGTGAGAGATGCTTAC-GCATGACA  887