BAC Information

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BAC

Clone NameB6Ng01-289J16
Chromosome12 (Build37)
Map Location 12,967,285 - 13,123,266
singlet/doubletdoublet
Overlap geneEG668473
Upstream geneLOC100043209, D12Ertd553e, LOC100043215, Mycn
Downstream geneLOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289J16.bB6Ng01-289J16.g
ACCGA086956GA086957
length1,163743
definitionB6Ng01-289J16.b B6Ng01-289J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,967,285 - 12,968,434)(13,122,443 - 13,123,266)
sequence
gaattctgtctcaggaggttggactaagtttaaatttattcccactggta
ggttttgttttttgagttagttagttagttagttagtttttgtttttgtt
tttgttcaattgctgaaaacactttcagtggcctttgggagtttatcctt
gagttgataaattctttttttttttttttaattcactttgcagtcggatt
ataaaactgtttcgtttcagaaggagggtttggctttttaaaggccatca
atcaattgtttggccctaattaattttgcctgagagcatctgacatgttc
acagaagtagcaattaacgtggaatggaggtgcaatcaccatctcaaata
tttaaacaatgtgattatataatatctatcaacagaattcttaaaaaaaa
aaacccacttagagatgtagatgcatagggggttaaagtcttgcttcagg
ggctggaaaatggagcttcagttttttaacctccctgatcttcagtctat
aagacaagatgttgccagcccctggtgccgacttccggttggccacacac
acttgggcccttggagcttaaacatgccttcagtagtctgcatagatcgt
atcagacaaaagattcactgtactttccctcagagtcagtctgtgggggg
tctacccagtcatcttccaagctcctggcaaaatgttcgcacaccctgtc
tcgcattttgcccagggtctgggatagcgctgagccccgggactgacttc
tccggcccctactttgtgccaggcgagaccttctaagtcttcagagcctt
acgttattttctctaaatgtataccatctatgagatactgctgcttcata
gaaatcttagagacactgctatcccttgcgtccctattctggtttgtttc
ttgagggggaggaaagagtttgcttgggcttacaaagtttacattttcat
caggtagggaagctaggggcaggaaccttaaaagcagagaccggcggagg
acgcttgcttttcttggctttgctcctcaatgctgcctcagactctctaa
atagaaacctgggacacctgtccagaggtactcacccacagtgggcttgg
cctttctgtgccaaggctattcagaaagttgccacaaacaggttacacaa
ggccagtctgttt
gaattcctaactcctttcctggtaggtgagaagagagagcagctctgaag
tcactggcaacacactgaggaactaaaacacagtagctgggagaggggac
aggagcaaaagccaaccattaactgcagagcacactgtggaggcagccag
cctacctggcgccatagtcactgaacttcatggactttgttaaagaagtc
aggaaggtgtctaatccatcttctattgcaaggcaaggagttaaaaatag
aagagctggtctcttcagatggagagtgaaagagatttaaaaaaaataag
actaatccgtgtttgtgaaacagttagctcacctcgatcagcagagggca
ggaagcagctgtaaggaagagatcctcaaccctcaggagaggggcagggg
gaggggattatggtattaaagtttctgttgccttcttctcaaaagaccta
gaacagctttaaaacaaacaacaacaagaaaaagacaatctgtcttgaag
aagatttttaaaaaaaaaaaaaaaaagaataatagacctgcactgtttgg
tttataacttttgaagtgtaatagtaaacaaatgagtgtcattttctgaa
agtctaaggatgtcatcagaccccttttctaaattctcccattttattaa
tcccacacaagatggacaatgcaatccaccttcatcaaaaggcttccagt
gagtgttacacgagattgctggaccacagtgttcaggggctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12967285_12968434
seq2: B6Ng01-289J16.b_49_1210

seq1  GAATTCTGTCTCAGGAGGTTGGACTAAGTTTAAATTTATTCCCACTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCAGGAGGTTGGACTAAGTTTAAATTTATTCCCACTGGTA  50

seq1  GGTTTTGTTTTTTGAGTTAGTTAGTTAGTTAGTTAGTTTTTGTTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTTTTGAGTTAGTTAGTTAGTTAGTTAGTTTTTGTTTTTGTT  100

seq1  TTTGTTCAATTGCTGAAAACACTTTCAGTGGCCTTTGGGAGTTTATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAATTGCTGAAAACACTTTCAGTGGCCTTTGGGAGTTTATCCTT  150

seq1  GAGTTGATAAATTCTTTTTTTTTTTTTTTAATTCACTTTGCAGTCGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATAAATTCTTTTTTTTTTTTTTTAATTCACTTTGCAGTCGGATT  200

seq1  ATAAAACTGTTTCGTTTCAGAAGGAGGGTTTGGCTTTTTAAAGGCCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGTTTCGTTTCAGAAGGAGGGTTTGGCTTTTTAAAGGCCATCA  250

seq1  ATCAATTGTTTGGCCCTAATTAATTTTGCCTGAGAGCATCTGACATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGTTTGGCCCTAATTAATTTTGCCTGAGAGCATCTGACATGTTC  300

seq1  ACAGAAGTAGCAATTAACGTGGAATGGAGGTGCAATCACCATCTCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTAGCAATTAACGTGGAATGGAGGTGCAATCACCATCTCAAATA  350

seq1  TTTAAACAATGTGATTATATAATATCTATCAACAGAATTCTTAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAATGTGATTATATAATATCTATCAACAGAATTCTTAAAAAAAA  400

seq1  AAACCCACTTAGAGATGTAGATGCATAGGGGGTTAAAGTCTTGCTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACTTAGAGATGTAGATGCATAGGGGGTTAAAGTCTTGCTTCAGG  450

seq1  GGCTGGAAAATGGAGCTTCAGTTTTTTAACCTCCCTGATCTTCAGTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAAATGGAGCTTCAGTTTTTTAACCTCCCTGATCTTCAGTCTAT  500

seq1  AAGACAAGATGTTGCCAGCCCCTGGTGCCGACTTCCGGTTGGCCACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGATGTTGCCAGCCCCTGGTGCCGACTTCCGGTTGGCCACACAC  550

seq1  ACTTGGGCCCTTGGAGCTTAAACATGCCTTCAGTAGTCTGCATAGATCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCCCTTGGAGCTTAAACATGCCTTCAGTAGTCTGCATAGATCGT  600

seq1  ATCAGACAAAAGATTCACTGTACTTTCCCTCAGAGTCAGTCTGTGGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAAAAGATTCACTGTACTTTCCCTCAGAGTCAGTCTGTGGGGGG  650

seq1  TCTACCCAGTCATCTTCCAAGCTCCTGGCAAAATGTTCGCACACCCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCAGTCATCTTCCAAGCTCCTGGCAAAATGTTCGCACACCCTGTC  700

seq1  TCGCATTTTGCCCAGGGTCTGGGATAGCGCTGAGCCCCGGGACTGACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATTTTGCCCAGGGTCTGGGATAGCGCTGAGCCCCGGGACTGACTTC  750

seq1  TCCGGCCCCTACTTTGTGCCAGGCGAGACCTTCTAAGTCTTCAGAGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCCCCTACTTTGTGCCAGGCGAGACCTTCTAAGTCTTCAGAGCCTT  800

seq1  ACGTTATTTTCTCTAAATGTATACCATCTATGAGATACTGCTGCTTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATTTTCTCTAAATGTATACCATCTATGAGATACTGCTGCTTCATA  850

seq1  GAAATCTTAGAGACACTGCTATCCCTTGCGTCCCTATTCTGGTTTGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTAGAGACACTGCTATCCCTTGCGTCCCTATTCTGGTTTGTTTC  900

seq1  TTGAGGGGGAGGAAAGAGTTTGCTT-GGCTTACAAAG-TTACA-TTTCAT  947
      ||||||||||||||||||||||||| ||||||||||| ||||| ||||||
seq2  TTGAGGGGGAGGAAAGAGTTTGCTTGGGCTTACAAAGTTTACATTTTCAT  950

seq1  CAGGTAGGGAAGCTA-GGGCAAGAA-CTTAAAAGCAGAGACC-GCGGAGG  994
      ||||||||||||||| ||||| ||| |||||||||||||||| |||||||
seq2  CAGGTAGGGAAGCTAGGGGCAGGAACCTTAAAAGCAGAGACCGGCGGAGG  1000

seq1  ACGC-TGCTTT--CTGGC-TTGCT-CTCATGGCTTGCTCAGACTCCTTAA  1039
      |||| ||||||   |||| ||||| ||||  |||  |||||||||  |||
seq2  ACGCTTGCTTTTCTTGGCTTTGCTCCTCAATGCTGCCTCAGACTCTCTAA  1050

seq1  ATA-AAACCTGGACCACCTGCCCAGAGGTAC-CACCCACAGTGGGCTGGG  1087
      ||| ||||||||  |||||| |||||||||| ||||||||||||||| ||
seq2  ATAGAAACCTGGGACACCTGTCCAGAGGTACTCACCCACAGTGGGCTTGG  1100

seq1  CCCTTCTGTGCCAAAAGCTAATCAAGAAAGTGGCCCACAGACATG-TACA  1136
      || ||||||||| || |||| || ||||||| | ||||| ||| | ||||
seq2  CCTTTCTGTGCC-AAGGCTATTC-AGAAAGTTG-CCACAAACAGGTTACA  1147

seq1  C-AGGCCAGTCTGTT  1150
      | |||||||||||||
seq2  CAAGGCCAGTCTGTT  1162

seq1: chr12_13122443_13123266
seq2: B6Ng01-289J16.g_67_809 (reverse)

seq1  GGAGCTCACATTCCCTAGTGTGCCTGAGCAGCAGTCAGTGTTCCTAACAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGATTTTGTTTTCCTTCAGGTTCATAGACAGTCATAGACAACAAGAG-CC  99
                                                  ||| ||
seq2  -------------------------------------------GGAGCCC  7

seq1  CTGAACACTGTCGT-CAGC-ATCTCGTGTAACACTCACTGG-AGCC-TTT  145
      ||||||||||| || |||| ||||||||||||||||||||| |||| |||
seq2  CTGAACACTGTGGTCCAGCAATCTCGTGTAACACTCACTGGAAGCCTTTT  57

seq1  GATGAAGGT-GATTGCATTGTCCATCTTGTGT-GGATTAATAAAAT-GGA  192
      ||||||||| |||||||||||||||||||||| ||||||||||||| |||
seq2  GATGAAGGTGGATTGCATTGTCCATCTTGTGTGGGATTAATAAAATGGGA  107

seq1  G-ATTTAG-AAAGGGGTCTGATGACATCCTTAGAC-TTCAG-AAATGACA  238
      | |||||| |||||||||||||||||||||||||| ||||| ||||||||
seq2  GAATTTAGAAAAGGGGTCTGATGACATCCTTAGACTTTCAGAAAATGACA  157

seq1  CTCATTTGTTTACTATTACACTTCAAAAGTTATAAACCAAACAGTGCAGG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTTTACTATTACACTTCAAAAGTTATAAACCAAACAGTGCAGG  207

seq1  TCTATTATTCTTTTTTTTTTTTTTTTTAAAAATCTTCTTCAAGACAGATT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATTCTTTTTTTTTTTTTTTTTAAAAATCTTCTTCAAGACAGATT  257

seq1  GTCTTTTTCTTGTTGTTGTTTGTTTTAAAGCTGTTCTAGGTCTTTTGAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTCTTGTTGTTGTTTGTTTTAAAGCTGTTCTAGGTCTTTTGAGA  307

seq1  AGAAGGCAACAGAAACTTTAATACCATAATCCCCTCCCCCTGCCCCTCTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAACAGAAACTTTAATACCATAATCCCCTCCCCCTGCCCCTCTC  357

seq1  CTGAGGGTTGAGGATCTCTTCCTTACAGCTGCTTCCTGCCCTCTGCTGAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTGAGGATCTCTTCCTTACAGCTGCTTCCTGCCCTCTGCTGAT  407

seq1  CGAGGTGAGCTAACTGTTTCACAAACACGGATTAGTCTTATTTTTTTTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGAGCTAACTGTTTCACAAACACGGATTAGTCTTATTTTTTTTAA  457

seq1  ATCTCTTTCACTCTCCATCTGAAGAGACCAGCTCTTCTATTTTTAACTCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTCACTCTCCATCTGAAGAGACCAGCTCTTCTATTTTTAACTCC  507

seq1  TTGCCTTGCAATAGAAGATGGATTAGACACCTTCCTGACTTCTTTAACAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGCAATAGAAGATGGATTAGACACCTTCCTGACTTCTTTAACAA  557

seq1  AGTCCATGAAGTTCAGTGACTATGGCGCCAGGTAGGCTGGCTGCCTCCAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGAAGTTCAGTGACTATGGCGCCAGGTAGGCTGGCTGCCTCCAC  607

seq1  AGTGTGCTCTGCAGTTAATGGTTGGCTTTTGCTCCTGTCCCCTCTCCCAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCTGCAGTTAATGGTTGGCTTTTGCTCCTGTCCCCTCTCCCAG  657

seq1  CTACTGTGTTTTAGTTCCTCAGTGTGTTGCCAGTGACTTCAGAGCTGCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTTTTAGTTCCTCAGTGTGTTGCCAGTGACTTCAGAGCTGCTC  707

seq1  TCTCTTCTCACCTACCAGGAAAGGAGTTAGGAATTC  824
      ||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCACCTACCAGGAAAGGAGTTAGGAATTC  743