BAC Information

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BAC

Clone NameB6Ng01-289M09
Chromosome12 (Build37)
Map Location 76,120,765 - 76,231,579
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneSyt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M09.bB6Ng01-289M09.g
ACCGA087079GA087080
length1,1371,066
definitionB6Ng01-289M09.b B6Ng01-289M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,120,765 - 76,121,898)(76,230,526 - 76,231,579)
sequence
gaattcttgtgacttccctgtttatatgcaaggacatcaacattataagt
gcctccacggtcatatgatttaggatgctgtgtctccctctcaaacgtcc
tgatgtcattcccccccaacccgtttttgtttgtttgtttgtttgttttt
tttgttttttttttgttttgtttttttttctgagacagggtttctctgtg
tagccctggctgtcctggaactcactttgtagaccaggctggcgtctaac
tcaaaaatctgcctgcctctgcctcctaaatgctgggattaaaggtgtgt
gccaccaccacctggcctgatgtcattcctaaaggtatcatggcatcttc
ttccagcctagaatatagtactcttccctagtccacttcttatagtcata
tgactgagtacaaaatacaaacgcaaggctctttgctagactgccatggg
ttctttctttgctaggcctgtatacagattaattaagtggattctgagtt
taaaatggagagtaaattctgaaaaaaggaaatttggcaaagcaaaagta
tttttaagtaaggcaaaattagttgatcaaggtgtaagaaatttgatttc
atgaaacagccaacatctgcaagctttaatctattggaacactataataa
tggcttatgattgtaacagatgtttctcttaaaaaacaaaaacaaaagca
aaaaaaccaacaaggattctgaatcaaataagtttcattaacattgcata
ttaattctttttcttggagagtcctaatccacattagcatatcacaatga
atattagcatatcaaaagcactaagaagcctcatggtagacaccattttt
ccatacttctgtgttttgggaacctcttttgatcattggaaatctacaaa
cattgcagatttccatggaaaacaacttcacaatcaaagcaacagcacga
gaagcacgtgcttatactgggtatgtgagagctgctgccattgtagagtc
ctgatacaatacagttgcaagactctagcacaggtatagctaggaaccat
tcgccgacctcctctggcacatccatttgcagtctgtgaatatcttccgt
ttgtgctggacctatgtctttccaaatccattttgac
gaattcactgtgaagtacaaagggctgatgacagacagacagacagacaa
agaaaaactggaatttttatgcattcagaaaatgtagctagagaaatctg
aaagcctgccaaatttcagcattacacacattgacttgctttctaataga
tttggtgatgtttttaaaatccaggtttaattttgccccctattatatat
aaccacatcccgggcaagatgtacatctattgtctccatgagcttcctgt
acaggcacagcacttaggcaaagattgagtcaattatcttacaaatgtgt
taatcttcaaaaataggcaataaaagtgcagaacctaaagaacagtctag
atcgtgttcatatggctcagcttgtggatgggaacaggtacatgttcctg
atatagaaacacttctgcaagagcagacacatctcaacccaggtctccat
tcaacataggagataagtcttctcctaaggcccctcatagtgcacagtgg
aagtgggaggaagttggggttcttggagctcttcacccttttgtccaatc
aagggggatagggcaagaaaaatgggtggtgcaaatttatttttgaaaca
gtttcttaataaaatattttgagttttgctagacccatggactgttgagt
aaactcagacatcaaatgctgagttagctagctggtggctgtcctccctt
catcccaaactgcctgtgtactgaggaaaccaccctgactgtgaaataaa
aaatgggagacacgggtgtctacagcatattttctctccctgcctccctc
tcctgctgtatcttcctatggacttagttttctctacaattgtcctagta
aagtgtagggagaaattccatagagcatggtttaattcgggagcagcctg
attggcactttcacacccctgtacctagggaagctttagaagtgaacggg
aattacacatagccaggcctgatttcgctgaggtacctacctagagtagc
tattgattatttggatggaggttcttgttcaccaaactgagccttactgg
ctgattacatacagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76120765_76121898
seq2: B6Ng01-289M09.b_45_1181

seq1  GAATTCTTGTGACTTCCCTGTTTATATGCAAGGACATCAACATTATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGACTTCCCTGTTTATATGCAAGGACATCAACATTATAAGT  50

seq1  GCCTCCACGGTCATATGATTTAGGATGCTGTGTCTCCCTCTCAAACGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACGGTCATATGATTTAGGATGCTGTGTCTCCCTCTCAAACGTCC  100

seq1  TGATGTCATTCCCCCCCAACCCGTTTTTGTTTGTTTGTTTGTTTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCATTCCCCCCCAACCCGTTTTTGTTTGTTTGTTTGTTTGTTTTT  150

seq1  TTTGTTTTTTTTTTGTTTTGTTTTTTTTTCTGAGACAGGGTTTCTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTGTTTTGTTTTTTTTTCTGAGACAGGGTTTCTCTGTG  200

seq1  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCGTCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCGTCTAAC  250

seq1  TCAGAAATCTGCCTGCCTCTGCCTCCTAAATGCTGGGATTAAAGGTGTGT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATCTGCCTGCCTCTGCCTCCTAAATGCTGGGATTAAAGGTGTGT  300

seq1  GCCACCACCACCTGGCCTGATGTCATTCCTAAAGGTATCATGGCATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCACCTGGCCTGATGTCATTCCTAAAGGTATCATGGCATCTTC  350

seq1  TTCCAGCCTAGAATATAGTACTCTTCCCTAGTCCACTTCTTATAGTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCTAGAATATAGTACTCTTCCCTAGTCCACTTCTTATAGTCATA  400

seq1  TGACTGAGTACAAAATACAAACGCAAGGCTCTTTGCTAGACTGCCATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGTACAAAATACAAACGCAAGGCTCTTTGCTAGACTGCCATGGG  450

seq1  TTCTTTCTTTGCTAGGCCTGTATACAGATTAATTAAGTGGATTCTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTGCTAGGCCTGTATACAGATTAATTAAGTGGATTCTGAGTT  500

seq1  TAAAATGGAGAGTAAATTCTGAAAAAAGGAAATTTGGCAAAGCAAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGAGAGTAAATTCTGAAAAAAGGAAATTTGGCAAAGCAAAAGTA  550

seq1  TTTTTAAGTAAGGCAAAATTAGTTGATCAAGGTGTAAGAAATTTGATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTAAGGCAAAATTAGTTGATCAAGGTGTAAGAAATTTGATTTC  600

seq1  ATGAAACAGCCAACATCTGCAAGCTTTAATCTATTGGAACACTATAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGCCAACATCTGCAAGCTTTAATCTATTGGAACACTATAATAA  650

seq1  TGGCTTATGATTGTAACAGATGTTTCTCTTAAAAAACAAAAACAAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATGATTGTAACAGATGTTTCTCTTAAAAAACAAAAACAAAAGCA  700

seq1  AAAAAACCAACAAGGATTCTGAATCAAATAAGTTTCATTAACATTGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCAACAAGGATTCTGAATCAAATAAGTTTCATTAACATTGCATA  750

seq1  TTAATTCTTTTTCTTGGAGAGTCCTAATCCACATTAGCATATCACAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTTTTCTTGGAGAGTCCTAATCCACATTAGCATATCACAATGA  800

seq1  ATATTAGCATATCAAAAGCACTAAGAAGCCTCATGGTAGACACCATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCATATCAAAAGCACTAAGAAGCCTCATGGTAGACACCATTTTT  850

seq1  CCATACTTCTGTGTTTTGGGAACCTCTTTTGATCATTGGAAATCTACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTCTGTGTTTTGGGAACCTCTTTTGATCATTGGAAATCTACAAA  900

seq1  CATTGCAGATTTCCATGGAAAACAACTTCACAATCAAAGCAACAGGCAGG  950
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  CATTGCAGATTTCCATGGAAAACAACTTCACAATCAAAGCAACA-GCACG  949

seq1  AGAAGCAGGTGCTTATACTGGGTATGTGAGAGGCTGCTGCCATTGTTAGA  1000
      ||||||| ||||||||||||||||||||||| ||||||||||||| ||||
seq2  AGAAGCACGTGCTTATACTGGGTATGTGAGA-GCTGCTGCCATTG-TAGA  997

seq1  GTCCTGATACAAAACAG-TGCAAGACTCTAGCACAGTTATAGCTAGGAAC  1049
      |||||||||||| |||| |||||||||||||||||| |||||||||||||
seq2  GTCCTGATACAATACAGTTGCAAGACTCTAGCACAGGTATAGCTAGGAAC  1047

seq1  CA-TCGCTGACCTCCTCTTGCACATTCATTTGCAGTCTGT-AATATCTTC  1097
      || |||| |||||||||| |||||| |||||||||||||| |||||||||
seq2  CATTCGCCGACCTCCTCTGGCACATCCATTTGCAGTCTGTGAATATCTTC  1097

seq1  C-TTTGTGCT-GACCTATGCCTTTCC-AATCCATTTTGAC  1134
      | |||||||| |||||||| |||||| |||||||||||||
seq2  CGTTTGTGCTGGACCTATGTCTTTCCAAATCCATTTTGAC  1137

seq1: chr12_76230526_76231579
seq2: B6Ng01-289M09.g_68_1133 (reverse)

seq1  AACTGAATGTAATCAGCCAGTAAGGCTCAGTTGGTTGAACA--AAACTCC  48
      ||||| |||||||||||||||||||||||||| | ||||||  || ||||
seq2  AACTGTATGTAATCAGCCAGTAAGGCTCAGTTTGGTGAACAAGAACCTCC  50

seq1  AT-CAAATTATCAATAGCT-CTCT-GGTAGG-ACCTCAGCGAAATCAGCC  94
      || ||||| |||||||||| |||| |||||| |||||||||||||||| |
seq2  ATCCAAATAATCAATAGCTACTCTAGGTAGGTACCTCAGCGAAATCAGGC  100

seq1  CTGGCTATGTGTAATTCCC-TTCAC-TCTAAAGC-TCCCTAGGTACA-GG  140
      ||||||||||||||||||| ||||| |||||||| |||||||||||| ||
seq2  CTGGCTATGTGTAATTCCCGTTCACTTCTAAAGCTTCCCTAGGTACAGGG  150

seq1  GTGTTGAAGTGCCAATCAGGCTGCTCCCGAATT-AACCATGCTCTATGGA  189
      ||||  ||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGTGAAAGTGCCAATCAGGCTGCTCCCGAATTAAACCATGCTCTATGGA  200

seq1  ATTTCTCCCTACACTTTACTAGGACAATTGTAGAGAAAACTAAGTCCATA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCCTACACTTTACTAGGACAATTGTAGAGAAAACTAAGTCCATA  250

seq1  GGAAGATACAGCAGGAGAGGGAGGCAGGGAGAGAAAATATGCTGTAGACA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATACAGCAGGAGAGGGAGGCAGGGAGAGAAAATATGCTGTAGACA  300

seq1  CCCGTGTCTCCCATTTTTTATTTCACAGTCAGGGTGGTTTCCTCAGTACA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTCTCCCATTTTTTATTTCACAGTCAGGGTGGTTTCCTCAGTACA  350

seq1  CAGGCAGTTTGGGATGAAGGGAGGACAGCCACCAGCTAGCTAACTCAGCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTTTGGGATGAAGGGAGGACAGCCACCAGCTAGCTAACTCAGCA  400

seq1  TTTGATGTCTGAGTTTACTCAACAGTCCATGGGTCTAGC-AAACTCAAAA  438
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTGATGTCTGAGTTTACTCAACAGTCCATGGGTCTAGCAAAACTCAAAA  450

seq1  TATTTTATTAAGAAACTGTTTCAAAAATAAATTTGCACCACCCATTTTTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTAAGAAACTGTTTCAAAAATAAATTTGCACCACCCATTTTTC  500

seq1  TTGCCCTATCCCCCTTGATTGGACAAAAGGGTGAAGAGCTCCAAGAACCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTATCCCCCTTGATTGGACAAAAGGGTGAAGAGCTCCAAGAACCC  550

seq1  CAACTTCCTCCCACTTCCACTGTGCACTATGAGGGGCCTTAGGAGAAGAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCTCCCACTTCCACTGTGCACTATGAGGGGCCTTAGGAGAAGAC  600

seq1  TTATCTCCTATGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCTATGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGC  650

seq1  AGAAGTGTTTCTATATCAGGAACATGTACCTGTTCCCATCCACAAGCTGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTTTCTATATCAGGAACATGTACCTGTTCCCATCCACAAGCTGA  700

seq1  GCCATATGAACACGATCTAGACTGTTCTTTAGGTTCTGCACTTTTATTGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGAACACGATCTAGACTGTTCTTTAGGTTCTGCACTTTTATTGC  750

seq1  CTATTTTTGAAGATTAACACATTTGTAAGATAATTGACTCAATCTTTGCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTGAAGATTAACACATTTGTAAGATAATTGACTCAATCTTTGCC  800

seq1  TAAGTGCTGTGCCTGTACAGGAAGCTCATGGAGACAATAGATGTACATCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTGTGCCTGTACAGGAAGCTCATGGAGACAATAGATGTACATCT  850

seq1  TGCCCGGGATGTGGTTATATATAATAGGGGGCAAAATTAAACCTGGATTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGGATGTGGTTATATATAATAGGGGGCAAAATTAAACCTGGATTT  900

seq1  TAAAAACATCACCAAATCTATTAGAAAGCAAGTCAATGTGTGTAATGCTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATCACCAAATCTATTAGAAAGCAAGTCAATGTGTGTAATGCTG  950

seq1  AAATTTGGCAGGCTTTCAGATTTCTCTAGCTACATTTTCTGAATGCATAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGCAGGCTTTCAGATTTCTCTAGCTACATTTTCTGAATGCATAA  1000

seq1  AAATTCCAGTTTTTCTTTGTCTGTCTGTCTGTCTGTCATCAGCCCTTTGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAGTTTTTCTTTGTCTGTCTGTCTGTCTGTCATCAGCCCTTTGT  1050

seq1  ACTTCACAGTGAATTC  1054
      ||||||||||||||||
seq2  ACTTCACAGTGAATTC  1066