BAC Information

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BAC

Clone NameB6Ng01-290A17
Chromosome12 (Build37)
Map Location 59,711,060 - 59,867,981
singlet/doubletdoublet
Overlap genenone
Upstream gene4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290A17.bB6Ng01-290A17.g
ACCGA087282GA087283
length1,0391,113
definitionB6Ng01-290A17.b B6Ng01-290A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,711,060 - 59,712,115)(59,866,863 - 59,867,981)
sequence
gaattcaaaccagagaatgtaaatagctgtatcagaactgctaaatgttc
cctgggggaagaataagcagtccttgtgagcagagtgcatgctagcgctc
agagatgggtcttttctgaaccagaatgttcttagtcctcagaggtatca
tggtcttttattcacctgtcctccacgaccagacccaggatctggctgca
cttttctatttgctgtagccacaaagagttcaataccatctcacttcatc
cctttcctcatatatatctctctccctcccctgtaccaattctgtccttc
aaaatcaggaagcaggctgaggtgctggtacctttcccatgaaattccag
aaggatctaattaacagtatatgcttttattatagtcaaccactttcaac
tggcatgctaaatgtctacaaatattacacaattctttctcaaagtaatg
tgctttgaaacccatgttcacgaaaacttatggcagtgtcagctttagat
aataccatcccagaggtgacaagaccaaagctcaacatgttctaggtact
gagctatggtcagtttgtgccagcatagaacctgagttttctgacttctc
atccaaattacacagcaaaactttttttgatctttttttttttttttttt
ttcagatagtgaggataaagaaggaacacaaaatctggcactcttgcttc
tttatttttctattactagagtcaagttgcaagcatccttgtgctagcag
ccgtgtcttcatgtctcttgctgccgtcatacatattgcatgtcaaccca
ctgaggggagagctacgcatctttccttgaaggaaaagtccaggtattag
ttcgtgttcacaatctaagccaaattcttcatttcaccaggaaaatgagt
gtgatttagtgaggctattgggtttcctacccttcccaccacatcagaaa
ctctacttcttctagcagagtacaattttaggtattttagatgccaaata
ttgtggtggcttgttgtaattgttgtttaacatttctgt

gaattcattaagtggcaataatttttcagtggagaaacagcctaaaagaa
atagatcttatgctgtggcttaagagctaggccactgagaaacaaaattg
ttccattctgatccttgaatcctgccccccacacccctgccgctgactga
ccacaaggaggtatagtccattggagagcaatgacctttgaagttgtcac
tgttcaaaacattcttcctcccgcctcctctttgtagcttttttgaaaca
ttcttcaccaatgctaactgagtccccctcttcccttaattacttcttga
taaatcaatcttccaaaagtagggcacgagcatttaaataccatgtatcc
agtctcattaccgatggaaaaaatctagagacttcagatgtgtgggactg
aactttaaagacactggctcctatgaaaatgtacgtctatatatacagtc
tgtggagaattctctggaactccagctatctaatgaggaactgagagtat
ggggaaacactatggagagaatctatactgttgtgttcctccctctaccc
cctgagcctggcacaaacagttttgaatcagcccagtctcaaatggcgtt
tgaaaagcattgctcagtatccaacctatgcagacacatatagacaggaa
caactatttgtgagaagtccaggaggccaaggaatgccaaatgtaagggg
gagtaaaagactccagtcatgtgttcctccagagattaaggcatccatta
agggactgtttttggaggacatgagtaagagatgctcttagggacattat
agatggagtttgtttgtggggcacatacatgctcagcatgtgtgaggttc
tgggttcaggctccagtacacacacacacacagagacacacacacacaga
cacagacacacacacacagacacagacacacacacacacagacacagaca
cagacacacacacagacacacacacacactcacacacactcacacaccac
acacccacacgaacttgcagatcaacagaacaggatagtgttttatttgc
aaatctagacagtgcatgataaagatgcaaatgaaattctcaatcacttt
tcagaacgaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59711060_59712115
seq2: B6Ng01-290A17.b_44_1082

seq1  GAATTCAAACCAGAGAATGTAAATAGCTGTATCAGAACTGCTAAATGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCAGAGAATGTAAATAGCTGTATCAGAACTGCTAAATGTTC  50

seq1  CCTGGGGGAAGAATAAGCAGTCCTTGTGAGCAGAGTGCATGCTAGCGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGAAGAATAAGCAGTCCTTGTGAGCAGAGTGCATGCTAGCGCTC  100

seq1  AGAGATGGGTCTTTTCTGAACCAGAATGTTCTTAGTCCTCAGAGGTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGTCTTTTCTGAACCAGAATGTTCTTAGTCCTCAGAGGTATCA  150

seq1  TGGTCTTTTATTCACCTGTCCTCCACGACCAGACCCAGGATCTGGCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTTATTCACCTGTCCTCCACGACCAGACCCAGGATCTGGCTGCA  200

seq1  CTTTTCTATTTGCTGTAGCCACAAAGAGTTCAATACCATCTCACTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATTTGCTGTAGCCACAAAGAGTTCAATACCATCTCACTTCATC  250

seq1  CCTTTCCTCATATATATCTCTCTCCCTCCCCTGTACCAATTCTGTCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCATATATATCTCTCTCCCTCCCCTGTACCAATTCTGTCCTTC  300

seq1  AAAATCAGGAAGCAGGCTGAGGTGCTGGTACCTTTCCCATGAAATTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGGAAGCAGGCTGAGGTGCTGGTACCTTTCCCATGAAATTCCAG  350

seq1  AAGGATCTAATTAACAGTATATGCTTTTATTATAGTCAACCACTTTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTAATTAACAGTATATGCTTTTATTATAGTCAACCACTTTCAAC  400

seq1  TGGCATGCTAAATGTCTACAAATATTACACAATTCTTTCTCAAAGTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCTAAATGTCTACAAATATTACACAATTCTTTCTCAAAGTAATG  450

seq1  TGCTTTGAAACCCATGTTCACGAAAACTTATGGCAGTGTCAGCTTTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGAAACCCATGTTCACGAAAACTTATGGCAGTGTCAGCTTTAGAT  500

seq1  AATACCATCCCAGAGGTGACAAGACCAAAGCTCAACATGTTCTAGGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATCCCAGAGGTGACAAGACCAAAGCTCAACATGTTCTAGGTACT  550

seq1  GAGCTATGGTCAGTTTGTGCCAGCATAGAACCTGAGTTTTCTGACTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGGTCAGTTTGTGCCAGCATAGAACCTGAGTTTTCTGACTTCTC  600

seq1  ATCCAAATTACACAGCAAAACTTTTTTTGATCTTTTTTTTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATTACACAGCAAAACTTTTTTTGATCTTTTTTTTTTTTTTTTTT  650

seq1  TTCAGATAGTGAGGATAAAGAAGGAACACAAAATCTGGCACTCTTGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAGTGAGGATAAAGAAGGAACACAAAATCTGGCACTCTTGCTTC  700

seq1  TTTATTTTTCTATTACTAGAGTCAAGTTGCAAGCATCCTTGTGCTAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTCTATTACTAGAGTCAAGTTGCAAGCATCCTTGTGCTAGCAG  750

seq1  CCGTGTCTTCATGTCTCTTGCTGCCGTCATACATATTGCATGTCAACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCTTCATGTCTCTTGCTGCCGTCATACATATTGCATGTCAACCCA  800

seq1  CTGAGGGGAGAGCTACGCATCTTTCCTTGAAGGAAAAGTCCAGGTATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGAGAGCTACGCATCTTTCCTTGAAGGAAAAGTCCAGGTATTAG  850

seq1  TTCGTGTTCACAATCTAAGCCAAATTCTTCATTTCACCAGGAAAATGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGTTCACAATCTAAGCCAAATTCTTCATTTCACCAGGAAAATGAGT  900

seq1  GTGATTTAGTGAGGCTAATTGGTTTCCTACCCTTCCCACCACATCAGAAA  950
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  GTGATTTAGTGAGGCTATTGGGTTTCCTACCCTTCCCACCACATCAGAAA  950

seq1  CTTCTACCTTCTTCTAGCCAGAAGTACAATTTTTAAGGGTATTTTTAAGA  1000
      | |||| |||||||||| ||| |||||||||||    ||||||||  |||
seq2  C-TCTA-CTTCTTCTAG-CAG-AGTACAATTTT---AGGTATTTT--AGA  991

seq1  TGCCCAAATATTGT-GTGGCTTTTGGTTTGTTTATTTGTTTGTTTTTACA  1049
      || ||||||||||| ||||||| |      | || |||||   ||| |||
seq2  TG-CCAAATATTGTGGTGGCTTGT------TGTAATTGTT--GTTTAACA  1032

seq1  TTTCTGT  1056
      |||||||
seq2  TTTCTGT  1039


seq1: chr12_59866863_59867981
seq2: B6Ng01-290A17.g_67_1179 (reverse)

seq1  GTCTTCGTTCTGAAAAGTGA-TGAGAA-TTCA-TTGCATCTTTAATCCAA  47
      |||||||||||||||||||| |||||| |||| |||||||||| |||  |
seq2  GTCTTCGTTCTGAAAAGTGATTGAGAATTTCATTTGCATCTTT-ATC--A  47

seq1  TGCACTGTCTAGATTTGCAAAATAAAACCAACCTATCCTTGTCTGTTGAT  97
      |||||||||||||||||| |||||||||    |||||||  |||||||||
seq2  TGCACTGTCTAGATTTGC-AAATAAAAC---ACTATCCTGTTCTGTTGAT  93

seq1  CTTGCAAGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  147
      | |||||||||||||| ||||||| ||||||| ||||||||| |||||||
seq2  C-TGCAAGTTCGTGTGGGTGTGTG-GTGTGTGAGTGTGTGTGAGTGTGTG  141

seq1  TGTGTGTCTGTGTGTGTGTCTGTGTCTGTGTCTGTGTGTGTGTGTGTCTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGTGTGTGTGTCTGTGTCTGTGTCTGTGTGTGTGTGTGTCTG  191

seq1  TGTCTGTGTGTGTGTGTCTGTGTCTGTGTGTGTGTGTCTCTGTGTGTGTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTGTGTGTCTGTGTCTGTGTGTGTGTGTCTCTGTGTGTGTG  241

seq1  TGTGTACTGGAGCCTGAACCCAGAACCTCACACATGCTGAGCATGTATGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTGGAGCCTGAACCCAGAACCTCACACATGCTGAGCATGTATGT  291

seq1  GCCCCACAAACAAACTCCATCTATAATGTCCCTAAGAGCATCTCTTACTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAAACAAACTCCATCTATAATGTCCCTAAGAGCATCTCTTACTC  341

seq1  ATGTCCTCCAAAAACAGTCCCTTAATGGATGCCTTAATCTCTGGAGGAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCCAAAAACAGTCCCTTAATGGATGCCTTAATCTCTGGAGGAAC  391

seq1  ACATGACTGGAGTCTTTTACTCCCCCTTACATTTGGCATTCCTTGGCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTGGAGTCTTTTACTCCCCCTTACATTTGGCATTCCTTGGCCTC  441

seq1  CTGGACTTCTCACAAATAGTTGTTCCTGTCTATATGTGTCTGCATAGGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTCTCACAAATAGTTGTTCCTGTCTATATGTGTCTGCATAGGTT  491

seq1  GGATACTGAGCAATGCTTTTCAAACGCCATTTGAGACTGGGCTGATTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGAGCAATGCTTTTCAAACGCCATTTGAGACTGGGCTGATTCAA  541

seq1  AACTGTTTGTGCCAGGCTCAGGGGGTAGAGGGAGGAACACAACAGTATAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTGTGCCAGGCTCAGGGGGTAGAGGGAGGAACACAACAGTATAG  591

seq1  ATTCTCTCCATAGTGTTTCCCCATACTCTCAGTTCCTCATTAGATAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCCATAGTGTTTCCCCATACTCTCAGTTCCTCATTAGATAGCTG  641

seq1  GAGTTCCAGAGAATTCTCCACAGACTGTATATATAGACGTACATTTTCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGAGAATTCTCCACAGACTGTATATATAGACGTACATTTTCAT  691

seq1  AGGAGCCAGTGTCTTTAAAGTTCAGTCCCACACATCTGAAGTCTCTAGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGTGTCTTTAAAGTTCAGTCCCACACATCTGAAGTCTCTAGAT  741

seq1  TTTTTCCATCGGTAATGAGACTGGATACATGGTATTTAAATGCTCGTGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATCGGTAATGAGACTGGATACATGGTATTTAAATGCTCGTGCC  791

seq1  CTACTTTTGGAAGATTGATTTATCAAGAAGTAATTAAGGGAAGAGGGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTGGAAGATTGATTTATCAAGAAGTAATTAAGGGAAGAGGGGGA  841

seq1  CTCAGTTAGCATTGGTGAAGAATGTTTCAAAAAAGCTACAAAGAGGAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTAGCATTGGTGAAGAATGTTTCAAAAAAGCTACAAAGAGGAGGC  891

seq1  GGGAGGAAGAATGTTTTGAACAGTGACAACTTCAAAGGTCATTGCTCTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAGAATGTTTTGAACAGTGACAACTTCAAAGGTCATTGCTCTCC  941

seq1  AATGGACTATACCTCCTTGTGGTCAGTCAGCGGCAGGGGTGTGGGGGGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTATACCTCCTTGTGGTCAGTCAGCGGCAGGGGTGTGGGGGGCA  991

seq1  GGATTCAAGGATCAGAATGGAACAATTTTGTTTCTCAGTGGCCTAGCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAGGATCAGAATGGAACAATTTTGTTTCTCAGTGGCCTAGCTCT  1041

seq1  TAAGCCACAGCATAAGATCTATTTCTTTTAGGCTGTTTCTCCACTGAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACAGCATAAGATCTATTTCTTTTAGGCTGTTTCTCCACTGAAAA  1091

seq1  ATTATTGCCACTTAATGAATTC  1119
      ||||||||||||||||||||||
seq2  ATTATTGCCACTTAATGAATTC  1113


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