BAC Information

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BAC

Clone NameB6Ng01-290M15
Chromosome12 (Build37)
Map Location 88,641,941 - 88,792,774
singlet/doubletdoublet
Overlap geneSptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1
Upstream geneLOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3
Downstream geneLOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290M15.bB6Ng01-290M15.g
ACCGA087844GA087845
length1,1411,068
definitionB6Ng01-290M15.b B6Ng01-290M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,791,639 - 88,792,774)(88,641,941 - 88,643,016)
sequence
gaattctttgattcaaagctttattcttaactgctgtgcaatgtaagcta
ggctgggcaggagtcagaatgaaagttccacataagtaaatacttcaaag
tggtcatctcttcagaccttaagcttaaaccttttaaaaccctgggaaac
ttgacaattttcattgtgatttaacggatagtgacattctcaggcagttg
aggtgatgtttgttagcatcattgtccagtacctacaatataatccttca
attttaatgtcactgttaattgatttttttggaatttggtctttgaagaa
tttcatacaattgagtttgaccatattcactttcctccacctcctcccag
atccaccctactttctctacacacccaactttgtgttttctttttgtttt
agttctggatttttgaagatgtattccttatgtatccctggctgtattgg
aatttactatgtgagccaggctggcctttgtaaaccagatctgcttgact
ctctgctcctgggtgtctcgattaaggttgtgcaccaccacacccagcca
tatgtcctttattttttggctagtcagaactttgttgtttgaggcagggc
ctcttatatatctctggctgtcttagaatatgacatttggaccaggctga
ctgaaactcagacctacctgcctgcctcattaccgctgggactcaaatgt
atatgaataacttgatacttgtttattattttatataaatgttgcagttg
aggtttttaaattagctgtaaacatggaaatgttaattcctaagtattca
gatccagctttggataagtatacctttatttttagtgtccttcatttttc
cacagggtatggacagtggatttgcaggtggagaagatgaaatttacaat
gtttatgatcaagcctggagaggtgggaaagatatgggcccagagcatct
acaggccagtaaaaatctgggacaaggacatgtatggtgatgacctggag
ccagggataaagaccaacaggtaccgtgtagaacagaacagaacggtttg
gtgtttccgtccgttacaggcagccaaggagagagtgctcattgacctct
gcctctttcccttagatttgttctgataagaagtttctgga
gaattcaccggactaaaggttaagctttacatttaaaaaaaaaagtttat
ttattttatgtatatgcgtatactgtcgatgtcttcagacacacaacaga
ggaagacactggatcccattacagatggttgtgagccaccatgtggttgc
tgggaattgaactccggatctctggaagagcagccactgagccatctctc
cagccccctcttttttttttttttctttttggtataaatattttcacatc
taccgccaatattttagccatacttttgacactttttaccagattaaaag
tgactttgaagataatgagcttgttgggcattcattcattcattcattca
ttctgtttccatgtcaataactgctactccactccaagccacgccctctc
ctctccaagctacgccccctagtctggactgtctgaatacccaaacgggc
tctgttggacccacttctgacctcatatcactcccaccattcactgccat
gaaacttatatcttttctaattttgaccaatttcattaaggcacagttca
aatgtcataaaccatatccattttttaggggttggagtggctagtcagtg
gttaagagtgctggcggtctttaccaacacccacagttgtagtggtttat
tttttaaaattttgtttattcatttaatttttgagatagggtcccactat
gtagctctggctgtcctggaactcacagatacactcctcctccctactct
atacctctagtgcaaagattgaaggcattggtcaccatgcctgggtctac
agtggatcgagtgagattggttcccataaacacctttgaatagttggccc
tcagttggtggaactgtttgggaagaattgggaagagttagtctttgaga
tttcaaagattcaaaggctttccagtgtgtttctcagattcctgtttgtg
ggttggggatgttgatctctcagtggctgctgcagcaccaagcggctgtg
tctgctatgtgcccgcagatgtgatgcactctatccctctgaactgccag
cttcaattaactcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88791639_88792774
seq2: B6Ng01-290M15.b_46_1186 (reverse)

seq1  TCCAGAAAACTCCTTATCAGGAACAAATCTAGGGGAAAAGAGCAGAGGTC  50
      ||||| ||||| ||||||| ||||||||||| ||||||   |||||||||
seq2  TCCAG-AAACTTCTTATCA-GAACAAATCTAAGGGAAAGAGGCAGAGGTC  48

seq1  -ATGAGCACTCT-TCCTTGGCTG-CTGTAAACGGGACGG-AACACC-AAC  95
       ||||||||||| |||||||||| ||||||   |||||| |||||| |||
seq2  AATGAGCACTCTCTCCTTGGCTGCCTGTAA--CGGACGGAAACACCAAAC  96

seq1  CG-TCTG-TCTG-TCTACACGGTACCTGTTGGTCTTTAT-CCTGGCTTCC  141
      || |||| |||| |||||||||||||||||||||||||| |||||| |||
seq2  CGTTCTGTTCTGTTCTACACGGTACCTGTTGGTCTTTATCCCTGGC-TCC  145

seq1  AGGTCATCACCATACATGTCCTTGT-CCAGATTTTTACTGGGCCTGTAGA  190
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  AGGTCATCACCATACATGTCCTTGTCCCAGATTTTTACT-GGCCTGTAGA  194

seq1  TGCTCTGGG-CCATATCTTTCCCACCTCTCCAGGCTTGATCATAAACATT  239
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGCCCATATCTTTCCCACCTCTCCAGGCTTGATCATAAACATT  244

seq1  GTAAATTTCATCTTCTCCACCTGCAAATCCACTGTCCATACCCTGTGGAA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTCATCTTCTCCACCTGCAAATCCACTGTCCATACCCTGTGGAA  294

seq1  AAATGAAGGACACTAAAAATAAAGGTATACTTATCCAAAGCTGGATCTGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGACACTAAAAATAAAGGTATACTTATCCAAAGCTGGATCTGA  344

seq1  ATACTTAGGAATTAACATTTCCATGTTTACAGCTAATTTAAAAACCTCAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGGAATTAACATTTCCATGTTTACAGCTAATTTAAAAACCTCAA  394

seq1  CTGCAACATTTATATAAAATAATAAACAAGTATCAAGTTATTCATATACA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACATTTATATAAAATAATAAACAAGTATCAAGTTATTCATATACA  444

seq1  TTTGAGTCCCAGCGGTAATGAGGCAGGCAGGTAGGTCTGAGTTTCAGTCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCCCAGCGGTAATGAGGCAGGCAGGTAGGTCTGAGTTTCAGTCA  494

seq1  GCCTGGTCCAAATGTCATATTCTAAGACAGCCAGAGATATATAAGAGGCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCCAAATGTCATATTCTAAGACAGCCAGAGATATATAAGAGGCC  544

seq1  CTGCCTCAAACAACAAAGTTCTGACTAGCCAAAAAATAAAGGACATATGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAAACAACAAAGTTCTGACTAGCCAAAAAATAAAGGACATATGG  594

seq1  CTGGGTGTGGTGGTGCACAACCTTAATCGAGACACCCAGGAGCAGAGAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTGGTGGTGCACAACCTTAATCGAGACACCCAGGAGCAGAGAGT  644

seq1  CAAGCAGATCTGGTTTACAAAGGCCAGCCTGGCTCACATAGTAAATTCCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGATCTGGTTTACAAAGGCCAGCCTGGCTCACATAGTAAATTCCA  694

seq1  ATACAGCCAGGGATACATAAGGAATACATCTTCAAAAATCCAGAACTAAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCAGGGATACATAAGGAATACATCTTCAAAAATCCAGAACTAAA  744

seq1  ACAAAAAGAAAACACAAAGTTGGGTGTGTAGAGAAAGTAGGGTGGATCTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGAAAACACAAAGTTGGGTGTGTAGAGAAAGTAGGGTGGATCTG  794

seq1  GGAGGAGGTGGAGGAAAGTGAATATGGTCAAACTCAATTGTATGAAATTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGTGGAGGAAAGTGAATATGGTCAAACTCAATTGTATGAAATTC  844

seq1  TTCAAAGACCAAATTCCAAAAAAATCAATTAACAGTGACATTAAAATTGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGACCAAATTCCAAAAAAATCAATTAACAGTGACATTAAAATTGA  894

seq1  AGGATTATATTGTAGGTACTGGACAATGATGCTAACAAACATCACCTCAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATATTGTAGGTACTGGACAATGATGCTAACAAACATCACCTCAA  944

seq1  CTGCCTGAGAATGTCACTATCCGTTAAATCACAATGAAAATTGTCAAGTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGAGAATGTCACTATCCGTTAAATCACAATGAAAATTGTCAAGTT  994

seq1  TCCCAGGGTTTTAAAAGGTTTAAGCTTAAGGTCTGAAGAGATGACCACTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGTTTTAAAAGGTTTAAGCTTAAGGTCTGAAGAGATGACCACTT  1044

seq1  TGAAGTATTTACTTATGTGGAACTTTCATTCTGACTCCTGCCCAGCCTAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATTTACTTATGTGGAACTTTCATTCTGACTCCTGCCCAGCCTAG  1094

seq1  CTTACATTGCACAGCAGTTAAGAATAAAGCTTTGAATCAAAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTGCACAGCAGTTAAGAATAAAGCTTTGAATCAAAGAATTC  1141

seq1: chr12_88641941_88643016
seq2: B6Ng01-290M15.g_67_1134

seq1  GAATTCACCGGACTAAAGGTTAAGCTTTACATTTAAAAAAAAAAGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGGACTAAAGGTTAAGCTTTACATTTAAAAAAAAAAGTTTAT  50

seq1  TTATTTTATGTATATGCGTATACTGTCGATGTCTTCAGACACACAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATGTATATGCGTATACTGTCGATGTCTTCAGACACACAACAGA  100

seq1  GGAAGACACTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGC  150

seq1  TGGGAATTGAACTCCGGATCTCTGGAAGAGCAGCCACTGAGCCATCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTGAACTCCGGATCTCTGGAAGAGCAGCCACTGAGCCATCTCTC  200

seq1  CAGCCCCCTCTTTTTTTTTTTTTTCTTTTTGGTATAAATATTTTCACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCTCTTTTTTTTTTTTTTCTTTTTGGTATAAATATTTTCACATC  250

seq1  TACCGCCAATATTTTAGCCATACTTTTGACACTTTTTACCAGATTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCCAATATTTTAGCCATACTTTTGACACTTTTTACCAGATTAAAAG  300

seq1  TGACTTTGAAGATAATGAGCTTGTTGGGCATTCATTCATTCATTCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGAAGATAATGAGCTTGTTGGGCATTCATTCATTCATTCATTCA  350

seq1  TTCTGTTTCCATGTCAATAACTGCTACTCCACTCCAAGCCACGCCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCCATGTCAATAACTGCTACTCCACTCCAAGCCACGCCCTCTC  400

seq1  CTCTCCAAGCTACGCCCCCTAGTCTGGACTGTCTGAATACCCAAACGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGCTACGCCCCCTAGTCTGGACTGTCTGAATACCCAAACGGGC  450

seq1  TCTGTTGGACCCACTTCTGACCTCATATCACTCCCACCATTCACTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGACCCACTTCTGACCTCATATCACTCCCACCATTCACTGCCAT  500

seq1  GAAACTTATATCTTTTCTAATTTTGACCAATTTCATTAAGGCACAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTATATCTTTTCTAATTTTGACCAATTTCATTAAGGCACAGTTCA  550

seq1  AATGTCATAAACCATATCCATTTTTTAGGGGTTGGAGTGGCTAGTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATAAACCATATCCATTTTTTAGGGGTTGGAGTGGCTAGTCAGTG  600

seq1  GTTAAGAGTGCTGGCGGTCTTTACCAACACCCACAGTTGTAGTGGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGTGCTGGCGGTCTTTACCAACACCCACAGTTGTAGTGGTTTAT  650

seq1  TTTTTAAAATTTTGTTTATTCATTTAATTTTTGAGATAGGGTCCCACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATTTTGTTTATTCATTTAATTTTTGAGATAGGGTCCCACTAT  700

seq1  GTAGCTCTGGCTGTCCTGGAACTCACAGATACACTCCTCCTCCCTACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGGCTGTCCTGGAACTCACAGATACACTCCTCCTCCCTACTCT  750

seq1  ATACCTCTAGTGCAAAGATTGAAGGCATTGGTCACCATGCCTGGGTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTAGTGCAAAGATTGAAGGCATTGGTCACCATGCCTGGGTCTAC  800

seq1  AGTGGATCGAGTGAGATTGGTTCCCATAAACACCTTTGAATAGTTGGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCGAGTGAGATTGGTTCCCATAAACACCTTTGAATAGTTGGCCC  850

seq1  TCAGTTGGTGGAACTGTTTGGGAAGAATTGGGAAGAGTTAGTCTTTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGTGGAACTGTTTGGGAAGAATTGGGAAGAGTTAGTCTTTGAGA  900

seq1  TTTCAAAAGATTC-AAGGCTTTCCCAGTGTG-TTCTCAGATTCCTGTTTG  948
      |||| |||||||| |||||||| |||||||| ||||||||||||||||||
seq2  TTTC-AAAGATTCAAAGGCTTT-CCAGTGTGTTTCTCAGATTCCTGTTTG  948

seq1  TGGGTT-GGGATG-TGATCTCTCAGTGGCTGCTGCAGCACCAAGCCGGCC  996
      |||||| |||||| |||||||||||||||||||||||||||||||  | |
seq2  TGGGTTGGGGATGTTGATCTCTCAGTGGCTGCTGCAGCACCAAGC--GGC  996

seq1  TGTGTTCTGCTATGTGCCCCGCCAGGATGGTGATGCACTCTTATCCCTCT  1046
      |||| ||||||||||| |||||   ||| ||||||||||| |||||||||
seq2  TGTG-TCTGCTATGTG-CCCGC--AGAT-GTGATGCACTC-TATCCCTCT  1040

seq1  GAAACTGCAAGCTCCAAATAAACTCTTCTA  1076
      | |||||| |||| | ||| ||||||||||
seq2  G-AACTGCCAGCTTC-AATTAACTCTTCTA  1068