BAC Information

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BAC

Clone NameB6Ng01-291D16
Chromosome12 (Build37)
Map Location 76,221,077 - 76,376,642
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneSyt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291D16.bB6Ng01-291D16.g
ACCGA088171GA088172
length1,173979
definitionB6Ng01-291D16.b B6Ng01-291D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,221,077 - 76,222,265)(76,376,036 - 76,376,642)
sequence
gaattctctcagaatgtcaaaggattgtagccactctatccagaaaaact
gagaagtgtcagttttatccttaagtaaacacccataatatgtttgaagt
gtggctaaaatgaggtacattctaatatctgtggtattttgtaacatctg
tgcctttctcagatctattatgcagtcccagtagtcaaggtagatactag
gtttaaaaacctttgtgttcctttgctttgcatgagtttgttaagggaaa
ccagctgcctggccagcaactcctttctcagcaccccatgcatctgtgtg
ttccaagtccctatatctcactaatggactgtaagcaaaaacatgatgcc
acatctgtatctctatttcaaaagcaagttggtatcaaggagtcctcccc
cttctaccagctggatgcaactggtaaggcctaaggggaaggcaaagcca
ctggatggctgtgcaaaaggatgccagccagggccacttgctttgaatta
ttacataaacaagaaatatccttctcctgtgtcaaatcatttttttcctt
attagaaaaaataacacataacattactacattattattgtttgttagag
tggctaccaccaccttaatgaaaacagttcttctgtacacagtgatgtac
aggagaaatagctcaattccaaccactctcccatattatggttcatatca
cacattctactttccttgtagcataacaaatgttatttctctcattaaca
actgcagtgatatctaaaaaagttatgcttggaatatctaaagccctaat
catattttcagaaagagaagttgcttttgggaaaaaggaatgtgaattta
atgggaagaaaatttcttctggggactcaaattgccattattaaaatcat
taatttcaagaaataccaatgagatgtgagcaaacagagaaaacccagcc
atattctgggccctatctcactatctttttcttctagctaaatcaaagct
cgtctctattaagatttgtttaaccatttcagcatttctgcagtatactc
attgatgggatagtccccaaacattccttaaagtgaaactacagcctggg
tcaaggggtgacttgatgaaattccagatgatcactaacctgagacttgc
ctgcaaaggctattgcctgtcaa
gaattcttacccccccatcgctgggataacaggcaaagtggaattatttg
tatgttctagaagctgggaagtcctagatgaaggtgtagggccattaggc
aggacacttggtgtagggataatctctgttgtactgtgtggaagcaacat
ctgccaataaaaagccaatggcttatagggaagggcagaataccaggtga
gacttaggacgtcagatgcatgaaactaaggagaggcaactagccatgtg
gtgaacactgaatagtctaaatgggctaatataagttacagactagtcac
agaacaagcttagcttttggcctaggcatttattcataaatagtaattat
ttatcaccgagtcattatttgggaattggtgtgcggtggaaaagcctggg
gttacacttggcttttgtttttcttttcttgtttgtttcttgagatagag
tcccactatttagcatctaggctgggctagaactcaaaatcttcttgcct
ttgcctcccaaatgctgttgttacaggcatctaccaccacatttgactct
gggtagcttttaaacaacgtaagtggatttctttatcattctgttctaga
agctgaaggtgcaggcagatcagacagggaaccactgcatcttgttgtat
ccccacatgcaaagcagagcagccagctctctctggggcctttcttagga
gggcactgattctgttcattgccttctaccctcaggaataagcaccttac
aaaggcttcgcctcctcacggcatcccattagggatcatactgcaacgca
ccagtattgggggcagtgcacacatacaaaggcggagctgctttgacttg
cgtgaccccccaaccatactgtgctgcttgagaaatggagcgaatgcatg
ggtaagtgccagggtctcacaggtctaacatttatagaaaacattccgaa
tgcatggctcagcgggtgtgatggcgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76221077_76222265
seq2: B6Ng01-291D16.b_50_1222

seq1  GAATTCTCTCAGAATGTCAAAGGATTGTAGCCACTCTATCCAGAAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGAATGTCAAAGGATTGTAGCCACTCTATCCAGAAAAACT  50

seq1  GAGAAGTGTCAGTTTTATCCTTAAGTAAACACCCATAATATGTTTGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGTCAGTTTTATCCTTAAGTAAACACCCATAATATGTTTGAAGT  100

seq1  GTGGCTAAAATGAGGTACATTCTAATATCTGTGGTATTTTGTAACATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAAAATGAGGTACATTCTAATATCTGTGGTATTTTGTAACATCTG  150

seq1  TGCCTTTCTCAGATCTATTATGCAGTCCCAGTAGTCAAGGTAGATACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCTCAGATCTATTATGCAGTCCCAGTAGTCAAGGTAGATACTAG  200

seq1  GTTTAAAAACCTTTGTGTTCCTTTGCTTTGCATGAGTTTGTTAAGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAACCTTTGTGTTCCTTTGCTTTGCATGAGTTTGTTAAGGGAAA  250

seq1  CCAGCTGCCTGGCCAGCAACTCCTTTCTCAGCACCCCATGCATCTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCCTGGCCAGCAACTCCTTTCTCAGCACCCCATGCATCTGTGTG  300

seq1  TTCCAAGTCCCTATATCTCACTAATGGACTGTAAGCAAAAACATGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTCCCTATATCTCACTAATGGACTGTAAGCAAAAACATGATGCC  350

seq1  ACATCTGTATCTCTATTTCAAAAGCAAGTTGGTATCAAGGAGTCCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTATCTCTATTTCAAAAGCAAGTTGGTATCAAGGAGTCCTCCCC  400

seq1  CTTCTACCAGCTGGATGCAACTGGTAAGGCCTAAGGGGAAGGCAAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCAGCTGGATGCAACTGGTAAGGCCTAAGGGGAAGGCAAAGCCA  450

seq1  CTGGATGGCTGTGCAAAAGGATGCCAGCCAGGGCCACTTGCTTTGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGCTGTGCAAAAGGATGCCAGCCAGGGCCACTTGCTTTGAATTA  500

seq1  TTACATAAACAAGAAATATCCTTCTCCTGTGTCAAATCATTTTTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAACAAGAAATATCCTTCTCCTGTGTCAAATCATTTTTTTCCTT  550

seq1  ATTAGAAAAAATAACACATAACATTACTACATTATTATTGTTTGTTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAAAATAACACATAACATTACTACATTATTATTGTTTGTTAGAG  600

seq1  TGGCTACCACCACCTTAATGAAAACAGTTCTTCTGTACACAGTGATGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACCACCACCTTAATGAAAACAGTTCTTCTGTACACAGTGATGTAC  650

seq1  AGGAGAAATAGCTCAATTCCAACCACTCTCCCATATTATGGTTCATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATAGCTCAATTCCAACCACTCTCCCATATTATGGTTCATATCA  700

seq1  CACATTCTACTTTCCTTGTAGCATAACAAATGTTATTTCTCTCATTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTACTTTCCTTGTAGCATAACAAATGTTATTTCTCTCATTAACA  750

seq1  ACTGCAGTGATATCTAAAAAAGTTATGCTTGGAATATCTAAAGCCCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTGATATCTAAAAAAGTTATGCTTGGAATATCTAAAGCCCTAAT  800

seq1  CATATTTTCAGAAAGAGAAGTTGCTTTTGGGAAAAAGGAATGTGAATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCAGAAAGAGAAGTTGCTTTTGGGAAAAAGGAATGTGAATTTA  850

seq1  ATGGGAAGAAAATTTCTTCTGGGGACTCAAATTGCCATTATTAAAATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGAAAATTTCTTCTGGGGACTCAAATTGCCATTATTAAAATCAT  900

seq1  TAATTTCAAAGAAATACCAATGAGATGTGAGCAAACAGAGAAAAACCAGC  950
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TAATTTC-AAGAAATACCAATGAGATGTGAGCAAACAGAGAAAACCCAGC  949

seq1  CATATTCT-GGCCCTATCTCAACTATCTTTT--CTCTAGCTAAATCAAAA  997
      |||||||| ||||||||||| ||||||||||   |||||||||||| |||
seq2  CATATTCTGGGCCCTATCTC-ACTATCTTTTTCTTCTAGCTAAATC-AAA  997

seq1  GCTCGTCTCTATTAAAGATTTGTTTAAACCCATTTCAGCATTTCTGCAGT  1047
      ||||||||||||| |||||||||||||  |||||||||||||||||||||
seq2  GCTCGTCTCTATT-AAGATTTGTTTAA--CCATTTCAGCATTTCTGCAGT  1044

seq1  ATTACTCATTGATGGGATAGTTCCCAAACAATTCCTTAAAAGTGAAAACT  1097
      | ||||||||||||||||||| ||||||| ||||||| |||||| |||||
seq2  A-TACTCATTGATGGGATAGTCCCCAAAC-ATTCCTT-AAAGTG-AAACT  1090

seq1  ACAGC--TGGTCAAAAGGGGTGAACTTGATGAAATTTCAGATGATTCACT  1145
      |||||   ||||  |||||||| ||||||||||||| ||||||| |||||
seq2  ACAGCCTGGGTC--AAGGGGTG-ACTTGATGAAATTCCAGATGA-TCACT  1136

seq1  AAACTGAAGAAACTCTGGGCCTGCAGAAGGCTAATGCCTGTCAA  1189
      || ||   || |||    ||||||| ||||||| ||||||||||
seq2  AACCT---GAGACT---TGCCTGCA-AAGGCTATTGCCTGTCAA  1173

seq1: chr12_76376036_76376642
seq2: B6Ng01-291D16.g_68_674 (reverse)

seq1  TTCAGCTTCTAGAACAGAATGATAAAGAAATCCACTTACGTTGTTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTCTAGAACAGAATGATAAAGAAATCCACTTACGTTGTTTAAAA  50

seq1  GCTACCCAGAGTCAAATGTGGTGGTAGATGCCTGTAACAACAGCATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCAGAGTCAAATGTGGTGGTAGATGCCTGTAACAACAGCATTTGG  100

seq1  GAGGCAAAGGCAAGAAGATTTTGAGTTCTAGCCCAGCCTAGATGCTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAGGCAAGAAGATTTTGAGTTCTAGCCCAGCCTAGATGCTAAAT  150

seq1  AGTGGGACTCTATCTCAAGAAACAAACAAGAAAAGAAAAACAAAAGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGACTCTATCTCAAGAAACAAACAAGAAAAGAAAAACAAAAGCCAA  200

seq1  GTGTAACCCCAGGCTTTTCCACCGCACACCAATTCCCAAATAATGACTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACCCCAGGCTTTTCCACCGCACACCAATTCCCAAATAATGACTCG  250

seq1  GTGATAAATAATTACTATTTATGAATAAATGCCTAGGCCAAAAGCTAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATAATTACTATTTATGAATAAATGCCTAGGCCAAAAGCTAAGC  300

seq1  TTGTTCTGTGACTAGTCTGTAACTTATATTAGCCCATTTAGACTATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTGACTAGTCTGTAACTTATATTAGCCCATTTAGACTATTCAG  350

seq1  TGTTCACCACATGGCTAGTTGCCTCTCCTTAGTTTCATGCATCTGACGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCACATGGCTAGTTGCCTCTCCTTAGTTTCATGCATCTGACGTC  400

seq1  CTAAGTCTCACCTGGTATTCTGCCCTTCCCTATAAGCCATTGGCTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCTCACCTGGTATTCTGCCCTTCCCTATAAGCCATTGGCTTTTTA  450

seq1  TTGGCAGATGTTGCTTCCACACAGTACAACAGAGATTATCCCTACACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGATGTTGCTTCCACACAGTACAACAGAGATTATCCCTACACCAA  500

seq1  GTGTCCTGCCTAATGGCCCTACACCTTCATCTAGGACTTCCCAGCTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGCCTAATGGCCCTACACCTTCATCTAGGACTTCCCAGCTTCTA  550

seq1  GAACATACAAATAATTCCACTTTGCCTGTTATCCCAGCGATGGGGGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACAAATAATTCCACTTTGCCTGTTATCCCAGCGATGGGGGGGTA  600

seq1  AGAATTC  607
      |||||||
seq2  AGAATTC  607