BAC Information

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BAC

Clone NameB6Ng01-291M09
Chromosome12 (Build37)
Map Location 39,837,136 - 39,952,458
singlet/doubletdoublet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291M09.bB6Ng01-291M09.g
ACCGA088577GA088578
length1,1331,148
definitionB6Ng01-291M09.b B6Ng01-291M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,951,309 - 39,952,458)(39,837,136 - 39,838,289)
sequence
gaattcaatgttaacaactgtagatcagctaggttcaaaggtttaaaaga
cagctgtagtagctgtcatgaggagctggaaacacttcccagtgctgaaa
gagcccaagaaaggtaggggaacttttaatgtttagaatgaaaaggtttg
taaaagcagcagaagaggtgctttctgggtggcatagctagtattggtgt
tgcttgcttccatcacttatcactccagggttgactaaggagacaccatg
aaactgatcatgcaaagcctggagatatgggagaccagatttgagtcagg
tatagccgggaactgtttgagcatgggtaaaggaaatactgctgtctgtc
aggagtgacacaggaggctcacagagtaccacaaaaatcatgggctcaag
cagatgctcttttattctccaggtttgtaaaacatctgtagctttttctt
gagaagagaatagaaatgtcttttaagctagtaagctctcatgacacaca
caatgaaaggcggaaagataaaggccacagcacattagacattgaaacaa
aacaaacaaaaaaaaaatgagagtgagggtgaaattaaagtgtaaagttt
tcttccgtgtagcaaaggagctgacaaaataattaattttgtgcattgca
atacacatatctataatgatgttgtaagcacctttttacctgaaaactag
aacaaccccccccatgcctaacaatggtattttctatgtgcttgaagacc
attcattttcccctgaaataattttctaaatctttcccagttgctttgct
ccacccttgcatatttttctaggcaagcactgaaaatctgttttgctgtt
tggttctaggggtcaaacacagtctgagatagctgcagttgcctttgctt
gtgctccagaaatgccatcccttcgtgcctttcacagtgtctgaaactat
gactcattgacttgctttctcttgttacctaggcctacctgggcttccag
acatatttctatcactgcagtctaggacaaatcatatactgccctaaaag
cccttccactgactcagctatagagctgaccatgactcccatagttcttc
tgaaatagtagcatgttattgtgagaatctcca

gaattcaactccaaggattcatgtggtagaggagggagatatgagtcctg
aaattttttctctgacctacatctatgggccatgaaacattctttctcac
agacaatgaattacaaatgtgacttttttaagttaagacattggattgat
atcaagatatttttcatgtcatccttctgataaccactgaagctaagcat
gtatgtacctatacatctgaagtgacagttaatttttttctcttctttca
gcttttacatctgtatttttctatccactgtgcagttctcctttcttaaa
cagttcttatagtcctggtgcatctttggtggtccttgaacactgtctct
aatattgcttccatttttcaaatgtttcacataaaggaaaagtagtatga
gaatgttctggacataatatatgtacaagtgtgagatttattattattta
caaataaccagtttaaatatggtaaggcatataatctcataggaaataat
aatatgaactagaaataagagaaagtgataattgaagcacccatcaaaac
caatgaagcaacaataaccaaatccacttcagtttaaaatgaagacataa
tgtggagagagattctcagtattatggagatgtgattactacacaaatta
atttttaaattaaatgcaagctgagtgttataaatttaaataaatctgag
ttgatataaaatttaaacctcatactaatagcaatacactcttgaaaaag
attaatagttttataaatcacaaattaatgattttatttcatatataaac
ttactaaaacaacatagttttggacacagaagaggcaaaggaagtataat
aagcaaaatattttcaaatggtcctaaaacagtctcttacattgagattg
gatacagacttgtggtaaaatattaagttagagcatacagaaaacatgat
aaattaatgccctgagaacagctactaattgccttggccatgatagaata
ttctgaggtacagtgtgtggaaaattaactttataattagagcgtgtaat
cagatttttggggtctagcatgatgcccttactgatgatgcactgaacaa
ctgcaagggtgtgtgtcgatgtacctcacaagtgcaccctctcaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39951309_39952458
seq2: B6Ng01-291M09.b_49_1181 (reverse)

seq1  TGGAGAGTGTCTCACAATAACATGCTACTTAATTTTCAGAAGAAACTATG  50
      ||||||   ||||||||||||||||||||    ||||||||| |||||||
seq2  TGGAGA--TTCTCACAATAACATGCTACT---ATTTCAGAAG-AACTATG  44

seq1  GGAAGTCATGTGTCAGCTCTATTAGCTGAGTCAGTGGGAAGGGCTTTTTA  100
      || ||||||| |||||||||| ||||||||||||| |||||||| |||||
seq2  GG-AGTCATG-GTCAGCTCTA-TAGCTGAGTCAGT-GGAAGGGC-TTTTA  89

seq1  GGGCAGGTATAATGATTTGTCCTAAGACTGCAGTGATAGAAATATGTTCT  150
      ||||| |||| |||||||||||| |||||||||||||||||||||| |||
seq2  GGGCA-GTAT-ATGATTTGTCCT-AGACTGCAGTGATAGAAATATG-TCT  135

seq1  GGAAGCCCAGGTAGGCCTAGGTAACCAAGAAGAAAGCAAGTCAATGAGTC  200
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  GGAAGCCCAGGTAGGCCTAGGTAA-CAAG-AGAAAGCAAGTCAATGAGTC  183

seq1  ATAGTTTCAGACACTGTGAAAGGCACGAAGGGATGGCATTTCTGGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCAGACACTGTGAAAGGCACGAAGGGATGGCATTTCTGGAGCAC  233

seq1  AAGCAAAGGCAACTGCAGCTATCTCAGACTGTGTTTGACCCCTAGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGCAACTGCAGCTATCTCAGACTGTGTTTGACCCCTAGAACCA  283

seq1  AACAGCAAAACAGATTTTCAGTGCTTGCCTAGAAAAATATGCAAGGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAAACAGATTTTCAGTGCTTGCCTAGAAAAATATGCAAGGGTGG  333

seq1  AGCAAAGCAACTGGGAAAGATTTAGAAAATTATTTCAGGGGAAAATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCAACTGGGAAAGATTTAGAAAATTATTTCAGGGGAAAATGAAT  383

seq1  GGTCTTCAAGCACATAGAAAATACCATTGTTAGGCATGGGGGGGGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCAAGCACATAGAAAATACCATTGTTAGGCATGGGGGGGGTTGTT  433

seq1  CTAGTTTTCAGGTAAAAAGGTGCTTACAACATCATTATAGATATGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTCAGGTAAAAAGGTGCTTACAACATCATTATAGATATGTGTAT  483

seq1  TGCAATGCACAAAATTAATTATTTTGTCAGCTCCTTTGCTACACGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGCACAAAATTAATTATTTTGTCAGCTCCTTTGCTACACGGAAGA  533

seq1  AAACTTTACACTTTAATTTCACCCTCACTCTCATTTTTTTTTTGTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTACACTTTAATTTCACCCTCACTCTCATTTTTTTTTTGTTTGTT  583

seq1  TTGTTTCAATGTCTAATGTGCTGTGGCCTTTATCTTTCCGCCTTTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCAATGTCTAATGTGCTGTGGCCTTTATCTTTCCGCCTTTCATTG  633

seq1  TGTGTGTCATGAGAGCTTACTAGCTTAAAAGACATTTCTATTCTCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCATGAGAGCTTACTAGCTTAAAAGACATTTCTATTCTCTTCTC  683

seq1  AAGAAAAAGCTACAGATGTTTTACAAACCTGGAGAATAAAAGAGCATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGCTACAGATGTTTTACAAACCTGGAGAATAAAAGAGCATCTG  733

seq1  CTTGAGCCCATGATTTTTGTGGTACTCTGTGAGCCTCCTGTGTCACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCCCATGATTTTTGTGGTACTCTGTGAGCCTCCTGTGTCACTCCT  783

seq1  GACAGACAGCAGTATTTCCTTTACCCATGCTCAAACAGTTCCCGGCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGCAGTATTTCCTTTACCCATGCTCAAACAGTTCCCGGCTATA  833

seq1  CCTGACTCAAATCTGGTCTCCCATATCTCCAGGCTTTGCATGATCAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCAAATCTGGTCTCCCATATCTCCAGGCTTTGCATGATCAGTTT  883

seq1  CATGGTGTCTCCTTAGTCAACCCTGGAGTGATAAGTGATGGAAGCAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCTCCTTAGTCAACCCTGGAGTGATAAGTGATGGAAGCAAGCA  933

seq1  ACACCAATACTAGCTATGCCACCCAGAAAGCACCTCTTCTGCTGCTTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATACTAGCTATGCCACCCAGAAAGCACCTCTTCTGCTGCTTTTA  983

seq1  CAAACCTTTTCATTCTAAACATTAAAAGTTCCCCTACCTTTCTTGGGCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTTTCATTCTAAACATTAAAAGTTCCCCTACCTTTCTTGGGCTC  1033

seq1  TTTCAGCACTGGGAAGTGTTTCCAGCTCCTCATGACAGCTACTACAGCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCACTGGGAAGTGTTTCCAGCTCCTCATGACAGCTACTACAGCTG  1083

seq1  TCTTTTAAACCTTTGAACCTAGCTGATCTACAGTTGTTAACATTGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAACCTTTGAACCTAGCTGATCTACAGTTGTTAACATTGAATTC  1133


seq1: chr12_39837136_39838289
seq2: B6Ng01-291M09.g_68_1215

seq1  GAATTCAACTCCAAGGATTCATGTGGTAGAGGAGGGAGATATGAGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCAAGGATTCATGTGGTAGAGGAGGGAGATATGAGTCCTG  50

seq1  AAATTTTTTCTCTGACCTACATCTATGGGCCATGAAACATTCTTTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTCTCTGACCTACATCTATGGGCCATGAAACATTCTTTCTCAC  100

seq1  AGACAATGAATTACAAATGTGACTTTTTTAAGTTAAGACATTGGATTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGAATTACAAATGTGACTTTTTTAAGTTAAGACATTGGATTGAT  150

seq1  ATCAAGATATTTTTCATGTCATCCTTCTGATAACCACTGAAGCTAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATATTTTTCATGTCATCCTTCTGATAACCACTGAAGCTAAGCAT  200

seq1  GTATGTACCTATACATCTGAAGTGACAGTTAATTTTTTTCTCTTCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACCTATACATCTGAAGTGACAGTTAATTTTTTTCTCTTCTTTCA  250

seq1  GCTTTTACATCTGTATTTTTCTATCCACTGTGCAGTTCTCCTTTCTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACATCTGTATTTTTCTATCCACTGTGCAGTTCTCCTTTCTTAAA  300

seq1  CAGTTCTTATAGTCCTGGTGCATCTTTGGTGGTCCTTGAACACTGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTATAGTCCTGGTGCATCTTTGGTGGTCCTTGAACACTGTCTCT  350

seq1  AATATTGCTTCCATTTTTCAAATGTTTCACATAAAGGAAAAGTAGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCTTCCATTTTTCAAATGTTTCACATAAAGGAAAAGTAGTATGA  400

seq1  GAATGTTCTGGACATAATATATGTACAAGTGTGAGATTTATTATTATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCTGGACATAATATATGTACAAGTGTGAGATTTATTATTATTTA  450

seq1  CAAATAACCAGTTTAAATATGGTAAGGCATATAATCTCATAGGAAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACCAGTTTAAATATGGTAAGGCATATAATCTCATAGGAAATAAT  500

seq1  AATATGAACTAGAAATAAGAGAAAGTGATAATTGAAGCACCCATCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACTAGAAATAAGAGAAAGTGATAATTGAAGCACCCATCAAAAC  550

seq1  CAATGAAGCAACAATAACCAAATCCACTTCAGTTTAAAATGAAGACATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGCAACAATAACCAAATCCACTTCAGTTTAAAATGAAGACATAA  600

seq1  TGTGGAGAGAGATTCTCAGTATTATGGAGATGTGATTACTACACAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAGAGATTCTCAGTATTATGGAGATGTGATTACTACACAAATTA  650

seq1  ATTTTTAAATTAAATGCAAGCTGAGTGTTATAAATTTAAATAAATCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTAAATGCAAGCTGAGTGTTATAAATTTAAATAAATCTGAG  700

seq1  TTGATATAAAATTTAAACCTCATACTAATAGCAATACACTCTTGAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAAAATTTAAACCTCATACTAATAGCAATACACTCTTGAAAAAG  750

seq1  ATTAATAGTTTTATAAATCACAAATTAATGATTTTATTTCATATATAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGTTTTATAAATCACAAATTAATGATTTTATTTCATATATAAAC  800

seq1  TTACTAAAACAACATAGTTTTGGACACAGAAGAGGCAAAGGAAGTATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAACAACATAGTTTTGGACACAGAAGAGGCAAAGGAAGTATAAT  850

seq1  AAGCAAAATATTTTCAAATGGTCCTAAAACAGTCTCTTACATTGAGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATATTTTCAAATGGTCCTAAAACAGTCTCTTACATTGAGATTG  900

seq1  GATACAGACTTGTGGTAAAATATTAAGTTAGAGCATACAGAAAACATGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGACTTGTGGTAAAATATTAAGTTAGAGCATACAGAAAACATGAT  950

seq1  AAATTAATGCCCTGAGAACAGCTACTAATTGCCTTGGCCATGATAGAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGCCCTGAGAACAGCTACTAATTGCCTTGGCCATGATAGAATA  1000

seq1  TTCTGAGGTACAGTGTGGTGGAAAATTAACTTTAT-ATTAGAGCGTGTAA  1049
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TTCTGAGGTACAGTGT-GTGGAAAATTAACTTTATAATTAGAGCGTGTAA  1049

seq1  TCAGATTTTTGGGGGTCTAGCATGGATGCCCTTTACTGATGATGCACTGA  1099
      |||||||||| |||||||||||| ||||||| ||||||||||||||||||
seq2  TCAGATTTTT-GGGGTCTAGCAT-GATGCCC-TTACTGATGATGCACTGA  1096

seq1  AACCAACTGC-AGGGTGTGTTGTCTGATGGTACTCACAAGTGCACCCTCT  1148
      |  ||||||| |||||||| |||| ||||   ||||||||||||||||||
seq2  A--CAACTGCAAGGGTGTG-TGTC-GATGTACCTCACAAGTGCACCCTCT  1142

seq1  CAATAG  1154
      ||||||
seq2  CAATAG  1148


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