BAC Information

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BAC

Clone NameB6Ng01-292H24
Chromosome12 (Build37)
Map Location 46,354,616 - 46,453,501
singlet/doubletdoublet
Overlap genenone
Upstream genePnpla8, Nrcam, EG620025, Stxbp6
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292H24.bB6Ng01-292H24.g
ACCGA089123GA089124
length6351,090
definitionB6Ng01-292H24.b B6Ng01-292H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,354,616 - 46,355,250)(46,452,411 - 46,453,501)
sequence
gaattcactggtgtttttttcctctgcttcttcatggagcacaataaaca
tgatataacacatgggcagaggaataggagagcaggactcaggaagttac
agtcatataatcaaaggcaagttaagattcatgctccaagactgggtagt
taagtgtagtatttgatgggaaactggggtttcttgtcatttctattgct
ttgtcttaaacagttcatgtctgttttaagaacctgttgtagtcaggatt
ctctacaactaatagaataaatttatattaattgggaatctattatgttg
gtctatatggtatgatttgggtagtttaacaatagttgtttttgtttttt
gtttttttttttttttttttttttttttttttttttgttttgttttggtt
tgtttctggagaggcccaaaatctggtagtttctcatttaataagtttgg
gcatctcagtcagactagtctagtaattaagacccagaggatttctggag
agccactagttgtagtctacattcggaaacctgaagctggttcccaacat
cagtgaagagaaagtggtagcagcaacagtaccagcaacaaagtagttgg
actttccactgaaagtgaaggaaatcagaaaaatg

gaattcttcccagaagtagatgccaagtgcagttagacatggaatatatt
tattgggagcatgttgtgaaagataaaggaaaatgagtggatgcagtcaa
gaagagtgttgatactgtgataaaaataagaacagagcactagctaaaag
attaatgcatgtcaatggtgctgctttgtgaaagttttccattagaggaa
tccttcttcaggcagtaatggacattcactagtaaaatactgttctgtga
acttctgggagctgctgccccaaactgaggcaacagtattctgtgggcag
caactggaggctggcagttagctctgctacccacagaaggttcttataaa
agagatgtaagtaccatgtatggtacatgtctatggttgctcttggtatt
tcaaggcagtgctaaaagacatgcctgtgtatttgaaggaaagaggattt
gcttaaggacagagatccacccccatggtattaaaatcattttgagtcac
cgctgttgctggttccacctgacagctccactagggatacaatcatgctt
aacctatctgagtaaaacaatatgaggagatgcaaacctctgtgagttgt
tcatttactagagaatttgattgggagttgggaagaaaaataccttatag
gatttgattagtcttttatcgtatccttaactatcagagcttctatttcc
ctggattcaacacccaaagaacaaagcaccagtgtcaggctatagccaat
gattgacttactcaaagatactgccagcaaagaaatacagaggaaagaca
aatttgctaataacagctactagaagaaatgaatcacattagtatgctct
agcctgtgcttttcctgctctgggcaagctgttctgtgctgcactgtgcc
cagctcttcttgggcttttcattttgttttctcagctctggaccaccccc
cacttctctcatatctatgggaatgctcatgttgtttgtaagcaaagaga
cagctgtccttgctctgtactgtctactgcaacagatatatggaagttaa
caaaaacttcaatgccacgtctaaattactaatttagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46354616_46355250
seq2: B6Ng01-292H24.b_46_680

seq1  GAATTCACTGGTGTTTTTTTCCTCTGCTTCTTCATGGAGCACAATAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTGTTTTTTTCCTCTGCTTCTTCATGGAGCACAATAAACA  50

seq1  TGATATAACACATGGGCAGAGGAATAGGAGAGCAGGACTCAGGAAGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAACACATGGGCAGAGGAATAGGAGAGCAGGACTCAGGAAGTTAC  100

seq1  AGTCATATAATCAAAGGCAAGTTAAGATTCATGCTCCAAGACTGGGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATAATCAAAGGCAAGTTAAGATTCATGCTCCAAGACTGGGTAGT  150

seq1  TAAGTGTAGTATTTGATGGGAAACTGGGGTTTCTTGTCATTTCTATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTAGTATTTGATGGGAAACTGGGGTTTCTTGTCATTTCTATTGCT  200

seq1  TTGTCTTAAACAGTTCATGTCTGTTTTAAGAACCTGTTGTAGTCAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAAACAGTTCATGTCTGTTTTAAGAACCTGTTGTAGTCAGGATT  250

seq1  CTCTACAACTAATAGAATAAATTTATATTAATTGGGAATCTATTATGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAACTAATAGAATAAATTTATATTAATTGGGAATCTATTATGTTG  300

seq1  GTCTATATGGTATGATTTGGGTAGTTTAACAATAGTTGTTTTTGTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATGGTATGATTTGGGTAGTTTAACAATAGTTGTTTTTGTTTTTT  350

seq1  G-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTTTGTTT  399
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTTTGGTT  400

seq1  TGTTTCTGGAGAGGCCCAGAATCTGGTAGTTTCTCATTTAATAAGTTTGG  449
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTTTCTGGAGAGGCCCAAAATCTGGTAGTTTCTCATTTAATAAGTTTGG  450

seq1  GCATCTCAGTCAGACTAGTCTAGTAATTAAGACCCAGAGGATTTCTGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCAGTCAGACTAGTCTAGTAATTAAGACCCAGAGGATTTCTGGAG  500

seq1  AGCCACTAGTTGTAGTCTACATTCGGAAACCTGAAGCTGGTTCCCAACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTAGTTGTAGTCTACATTCGGAAACCTGAAGCTGGTTCCCAACAT  550

seq1  CAGTGAAGAGAAAGTGGTAGCAGCAACAGTACCAGCAACAAAGTAGTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGAGAAAGTGGTAGCAGCAACAGTACCAGCAACAAAGTAGTTGG  600

seq1  ACTTTCCACTGAAAGTGAAGGAAATCAGACAAAATG  635
      ||||||||||||||||||||||||||||| ||||||
seq2  ACTTTCCACTGAAAGTGAAGGAAATCAGA-AAAATG  635


seq1: chr12_46452411_46453501
seq2: B6Ng01-292H24.g_66_1155 (reverse)

seq1  CTTCTCTAATTAGTAATTTAGACCCTGGCAATTGAGTTTTTG-TAACTTC  49
      |||||  ||||||||||||||| | ||||| |  |||||||| |||||||
seq2  CTTCT-AAATTAGTAATTTAGA-CGTGGCATTGAAGTTTTTGTTAACTTC  48

seq1  CATATATCTGTTGCAGTAGACAGTACAAGAGCAAGGACAGCTGTCTCTTT  99
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATATATCTGTTGCAGTAGACAGTAC-AGAGCAAGGACAGCTGTCTCTTT  97

seq1  GCTTTACAAACAACATGAGCATT-CCATAGATATGAGAGAAGT-GGGGGT  147
      || |||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  GC-TTACAAACAACATGAGCATTCCCATAGATATGAGAGAAGTGGGGGGT  146

seq1  GGTCCAGAGCTGAGAAAACAAAATGAAAAGCCCAAGAAGAGCTGGGCACA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGAGCTGAGAAAACAAAATGAAAAGCCCAAGAAGAGCTGGGCACA  196

seq1  GTGCAGCACAGAACAGCTTGCCCAGAGCAGGAAAAGCACAGGCTAGAGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCACAGAACAGCTTGCCCAGAGCAGGAAAAGCACAGGCTAGAGCA  246

seq1  TACTAATGTGATTCATTTCTTCTAGTAGCTGTTATTAGCAAATTTGTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGTGATTCATTTCTTCTAGTAGCTGTTATTAGCAAATTTGTCTT  296

seq1  TCCTCTGTATTTCTTTGCTGGCAGTATCTTTGAGTAAGTCAATCATTGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTATTTCTTTGCTGGCAGTATCTTTGAGTAAGTCAATCATTGGC  346

seq1  TATAGCCTGACACTGGTGCTTTGTTCTTTGGGTGTTGAATCCAGGGAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTGACACTGGTGCTTTGTTCTTTGGGTGTTGAATCCAGGGAAAT  396

seq1  AGAAGCTCTGATAGTTAAGGATACGATAAAAGACTAATCAAATCCTATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTGATAGTTAAGGATACGATAAAAGACTAATCAAATCCTATAA  446

seq1  GGTATTTTTCTTCCCAACTCCCAATCAAATTCTCTAGTAAATGAACAACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTTCTTCCCAACTCCCAATCAAATTCTCTAGTAAATGAACAACT  496

seq1  CACAGAGGTTTGCATCTCCTCATATTGTTTTACTCAGATAGGTTAAGCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTTTGCATCTCCTCATATTGTTTTACTCAGATAGGTTAAGCAT  546

seq1  GATTGTATCCCTAGTGGAGCTGTCAGGTGGAACCAGCAACAGCGGTGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTATCCCTAGTGGAGCTGTCAGGTGGAACCAGCAACAGCGGTGACT  596

seq1  CAAAATGATTTTAATACCATGGGGGTGGATCTCTGTCCTTAAGCAAATCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGATTTTAATACCATGGGGGTGGATCTCTGTCCTTAAGCAAATCC  646

seq1  TCTTTCCTTCAAATACACAGGCATGTCTTTTAGCACTGCCTTGAAATACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTCAAATACACAGGCATGTCTTTTAGCACTGCCTTGAAATACC  696

seq1  AAGAGCAACCATAGACATGTACCATACATGGTACTTACATCTCTTTTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAACCATAGACATGTACCATACATGGTACTTACATCTCTTTTATA  746

seq1  AGAACCTTCTGTGGGTAGCAGAGCTAACTGCCAGCCTCCAGTTGCTGCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTTCTGTGGGTAGCAGAGCTAACTGCCAGCCTCCAGTTGCTGCCC  796

seq1  ACAGAATACTGTTGCCTCAGTTTGGGGCAGCAGCTCCCAGAAGTTCACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATACTGTTGCCTCAGTTTGGGGCAGCAGCTCCCAGAAGTTCACAG  846

seq1  AACAGTATTTTACTAGTGAATGTCCATTACTGCCTGAAGAAGGATTCCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTTTACTAGTGAATGTCCATTACTGCCTGAAGAAGGATTCCTC  896

seq1  TAATGGAAAACTTTCACAAAGCAGCACCATTGACATGCATTAATCTTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAAACTTTCACAAAGCAGCACCATTGACATGCATTAATCTTTTA  946

seq1  GCTAGTGCTCTGTTCTTATTTTTATCACAGTATCAACACTCTTCTTGACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGCTCTGTTCTTATTTTTATCACAGTATCAACACTCTTCTTGACT  996

seq1  GCATCCACTCATTTTCCTTTATCTTTCACAACATGCTCCCAATAAATATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACTCATTTTCCTTTATCTTTCACAACATGCTCCCAATAAATATA  1046

seq1  TTCCATGTCTAACTGCACTTGGCATCTACTTCTGGGAAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTCTAACTGCACTTGGCATCTACTTCTGGGAAGAATTC  1090


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