BAC Information

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BAC

Clone NameB6Ng01-292N18
Chromosome12 (Build37)
Map Location 56,759,612 - 56,920,817
singlet/doubletdoublet
Overlap geneGarnl1
Upstream geneEapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N18.bB6Ng01-292N18.g
ACCGA089388GA089389
length7281,133
definitionB6Ng01-292N18.b B6Ng01-292N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,920,090 - 56,920,817)(56,759,612 - 56,760,764)
sequence
gaattctaattcagagtttatcatctcaagctgtcctcctaatttctgtc
tgttttggaaagtgacttatatgtttagtggtgtgtcctctgtttcatgg
atggatttctctactgtgttgtgactaataccaccaatgatacccaacat
ttgtgtggtgttttgctgtctacaaagggtctcacatgaattagtataat
ccaacatgaccatctgtctagaaatagagatattatttgccattttaaaa
aatatataaacaaaaaagttgaagatggatggagctggtggagactaacg
accacaacgaagcctagattttctgtctctgatttgtttttcagccttcc
tacatgtctgacagctagtcttagttatcacaagtacttatacctgtggt
atagtgagaaagcaattaaatccatcttatgtaaaccatttaaatatggt
agaggtttttaacatttccattttggagttaagtcattgaagatttgcgt
gaaaagatatgctgagacacgcaaagtcatcggcacgtaaatgtattaca
aaataacggccgtttgaaagtggacacttggtgcaatctgactctcactt
gagacaagctgtagattgcataaatgcagttgtaactataaagctgagtt
acagcagggtattgagagttcctaaattacctgccacagcatagagggtt
ttgtggttgtgtgtatgtgtgtagtgtg
gaattcagggacagtttgagctgcacagcaaaactatgtctacaaataaa
caaacagaaaacaagtgacatgtaacaaatgaacaacaacaacaacaaac
tataccaaaaataataattcagttgatgaagtcggagaaaggcataaaga
tacaaaatagcaggtttataggttaacaaatctaggaatttaatgttaaa
aaggattggttcaatagtgagaccgtaacctacaatcgtatcattgttgt
ttattaaaggaaaacccaatttactacacaacaatcctggttttgaagat
ggcattggttaaagaaacaaactctttacctaccaacagggctccaccaa
ctggatgttagtattttacatgattttcttaactaatatgctttaattaa
aaatgtttcccctcagcacttacttttttggtcagagagtcatcagaatc
agaaggcattcgtgtagatacatgaaatattacttctactgtcgaggtag
caaaatagggagtggtcagtccagtgcttctgttcttctgaaggcctccc
atgaagccacagtggtttgtaaggtttacctgcaatcagtgaagaactac
ttaaacatcatcatcaccgtcatcaccaccaccttagaaacactgttgaa
aaagaacaaagttcactttacaaaaccatgagaagtacagttttttcatt
ctgctatattctcagatgagtgccttgctcagtaccattagagaagcttc
ctcctgcagcgcatgggaacaaatagagatccactgtcggactatgtgca
gagagtgagagacatccgaacactcagtcctaagtaggttgtctccatca
catctctcccctcaagcctcagtgaaccccacagaagagaaggagaaaga
gtgtaagagccagtggacaccaagaaaacaaggtcttctaaatcagtagg
actgacccacatatgaactcacagagaccgaggcagcatgcacagggcct
gactagatggggtcctagagctaaaagaaatgacatgtaccctcaatccc
tactcaaatcatctcatgattacacttacgagtaatttagtttcttcaag
gaagtctcattggatcaggctactctagtagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56920090_56920817
seq2: B6Ng01-292N18.b_48_775 (reverse)

seq1  CACACTACACACATACACACAACCACAAAACCCTCTATGCTGTGGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACACACATACACACAACCACAAAACCCTCTATGCTGTGGCAGGT  50

seq1  AATTTAGGAACTCTCAATACCCTGCTGTAACTCAGCTTTATAGTTACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGAACTCTCAATACCCTGCTGTAACTCAGCTTTATAGTTACAAC  100

seq1  TGCATTTATGCAATCTACAGCTTGTCTCAAGTGAGAGTCAGATTGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATGCAATCTACAGCTTGTCTCAAGTGAGAGTCAGATTGCACCA  150

seq1  AGTGTCCACTTTCAAACGGCCGTTATTTTGTAATACATTTACGTGCCGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCACTTTCAAACGGCCGTTATTTTGTAATACATTTACGTGCCGAT  200

seq1  GACTTTGCGTGTCTCAGCATATCTTTTCACGCAAATCTTCAATGACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCGTGTCTCAGCATATCTTTTCACGCAAATCTTCAATGACTTAA  250

seq1  CTCCAAAATGGAAATGTTAAAAACCTCTACCATATTTAAATGGTTTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAATGGAAATGTTAAAAACCTCTACCATATTTAAATGGTTTACAT  300

seq1  AAGATGGATTTAATTGCTTTCTCACTATACCACAGGTATAAGTACTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGATTTAATTGCTTTCTCACTATACCACAGGTATAAGTACTTGTG  350

seq1  ATAACTAAGACTAGCTGTCAGACATGTAGGAAGGCTGAAAAACAAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAGACTAGCTGTCAGACATGTAGGAAGGCTGAAAAACAAATCAG  400

seq1  AGACAGAAAATCTAGGCTTCGTTGTGGTCGTTAGTCTCCACCAGCTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAATCTAGGCTTCGTTGTGGTCGTTAGTCTCCACCAGCTCCAT  450

seq1  CCATCTTCAACTTTTTTGTTTATATATTTTTTAAAATGGCAAATAATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCAACTTTTTTGTTTATATATTTTTTAAAATGGCAAATAATATC  500

seq1  TCTATTTCTAGACAGATGGTCATGTTGGATTATACTAATTCATGTGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCTAGACAGATGGTCATGTTGGATTATACTAATTCATGTGAGAC  550

seq1  CCTTTGTAGACAGCAAAACACCACACAAATGTTGGGTATCATTGGTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTAGACAGCAAAACACCACACAAATGTTGGGTATCATTGGTGGTA  600

seq1  TTAGTCACAACACAGTAGAGAAATCCATCCATGAAACAGAGGACACACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACAACACAGTAGAGAAATCCATCCATGAAACAGAGGACACACCA  650

seq1  CTAAACATATAAGTCACTTTCCAAAACAGACAGAAATTAGGAGGACAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATATAAGTCACTTTCCAAAACAGACAGAAATTAGGAGGACAGCT  700

seq1  TGAGATGATAAACTCTGAATTAGAATTC  728
      ||||||||||||||||||||||||||||
seq2  TGAGATGATAAACTCTGAATTAGAATTC  728

seq1: chr12_56759612_56760764
seq2: B6Ng01-292N18.g_66_1198

seq1  GAATTCAGGGACAGTTTGAGCTGCACAGCAAAACTATGTCTACAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACAGTTTGAGCTGCACAGCAAAACTATGTCTACAAATAAA  50

seq1  CAAACAGAAAACAAGTGACATGTAACAAATGAACAACAACAACAACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGAAAACAAGTGACATGTAACAAATGAACAACAACAACAACAAAC  100

seq1  TATACCAAAAATAATAATTCAGTTGATGAAGTCGGAGAAAGGCATAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAAAAATAATAATTCAGTTGATGAAGTCGGAGAAAGGCATAAAGA  150

seq1  TACAAAATAGCAGGTTTATAGGTTAACAAATCTAGGAATTTAATGTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATAGCAGGTTTATAGGTTAACAAATCTAGGAATTTAATGTTAAA  200

seq1  AAGGATTGGTTCAATAGTGAGACCGTAACCTACAATCGTATCATTGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGTTCAATAGTGAGACCGTAACCTACAATCGTATCATTGTTGT  250

seq1  TTATTAAAGGAAAACCCAATTTACTACACAACAATCCTGGTTTTGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGGAAAACCCAATTTACTACACAACAATCCTGGTTTTGAAGAT  300

seq1  GGCATTGGTTAAAGAAACAAACTCTTTACCTACCAACAGGGCTCCACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGTTAAAGAAACAAACTCTTTACCTACCAACAGGGCTCCACCAA  350

seq1  CTGGATGTTAGTATTTTACATGATTTTCTTAACTAATATGCTTTAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTTAGTATTTTACATGATTTTCTTAACTAATATGCTTTAATTAA  400

seq1  AAATGTTTCCCCTCAGCACTTACTTTTTTGGTCAGAGAGTCATCAGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCCCCTCAGCACTTACTTTTTTGGTCAGAGAGTCATCAGAATC  450

seq1  AGAAGGCATTCGTGTAGATACATGAAATATTACTTCTACTGTCGAGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCATTCGTGTAGATACATGAAATATTACTTCTACTGTCGAGGTAG  500

seq1  CAAAATAGGGAGTGGTCAGTCCAGTGCTTCTGTTCTTCTGAAGGCCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGGGAGTGGTCAGTCCAGTGCTTCTGTTCTTCTGAAGGCCTCCC  550

seq1  ATGAAGCCACAGTGGTTTGTAAGGTTTACCTGCAATCAGTGAAGAACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCACAGTGGTTTGTAAGGTTTACCTGCAATCAGTGAAGAACTAC  600

seq1  TTAAACATCATCATCACCGTCATCACCACCACCTTAGAAACACTGTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATCATCATCACCGTCATCACCACCACCTTAGAAACACTGTTGAA  650

seq1  AAAGAACAAAGTTCACTTTACAAAACCATGAGAAGTACAGTTTTTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAAGTTCACTTTACAAAACCATGAGAAGTACAGTTTTTTCATT  700

seq1  CTGCTATATTCTCAGATGAGTGCCTTGCTCAGTACCATTAGAGAAGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATATTCTCAGATGAGTGCCTTGCTCAGTACCATTAGAGAAGCTTC  750

seq1  CTCCTGCAGCGCATGGGAACAAATAGAGATCCACTGTCGGACTATGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCAGCGCATGGGAACAAATAGAGATCCACTGTCGGACTATGTGCA  800

seq1  GAGAGTGAGAGACATCCGAACACTCAGTCCTAAGTAGGTTGTCTCCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGAGACATCCGAACACTCAGTCCTAAGTAGGTTGTCTCCATCA  850

seq1  CATCTCTCCCCTCAAGCCTCAGTGAACCCCACAGAAGAGAAGGGAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATCTCTCCCCTCAAGCCTCAGTGAACCCCACAGAAGAGAA-GGAGAAAG  899

seq1  AGTGTAAGAGCCAGTGGACACCAAGAAAACAAGGTCTTCTAAATCAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGTAAGAGCCAGTGGACACCAAGAAAACAAGGTCTTCTAAATCAGTAG  949

seq1  GACTGACCCACATATGAACTCACAGAGACCGAGGCAGCATGCACAGGGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACCCACATATGAACTCACAGAGACCGAGGCAGCATGCACAGGGCC  999

seq1  TGAACTAGATGGGGTCCTAGAGCTAAAAGAAATGGACATGTACCC-CCAT  1049
      || |||||||||||||||||||||||||||||| ||||||||||| | ||
seq2  TG-ACTAGATGGGGTCCTAGAGCTAAAAGAAAT-GACATGTACCCTCAAT  1047

seq1  CCCTAACTCAAAATCAATCTCCAATTGATAACCACTTACAAATTAAAATT  1099
      |||| |||| ||||| |||||    |||| | ||||||| | |   ||||
seq2  CCCT-ACTC-AAATC-ATCTC---ATGATTA-CACTTACGAGT---AATT  1087

seq1  TAGTTTTCTCCAAGAAAAGTCTCATTGGGAAACAAGCTACTCTTAAGGGT  1149
      ||| ||||| ||||  ||||||||||||  | || ||||||||     ||
seq2  TAG-TTTCTTCAAG-GAAGTCTCATTGG--ATCAGGCTACTCT----AGT  1129

seq1  AGAT  1153
      ||||
seq2  AGAT  1133