BAC Information

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BAC

Clone NameB6Ng01-293E14
Chromosome12 (Build37)
Map Location 47,556,192 - 47,613,680
singlet/doubletdoublet
Overlap geneLOC664952
Upstream genenone
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293E14.bB6Ng01-293E14.g
ACCGA089706GA089707
length5081,098
definitionB6Ng01-293E14.b B6Ng01-293E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,556,192 - 47,556,705)(47,612,580 - 47,613,680)
sequence
ttctcaacagtaaatataattaataaaaagaaagctaaaagtgtttcagg
tattatttactatttgtataaatgttaattttcttaataaacaaattaat
cttcaaaaatctagtcaaattccaatatgttttaaaaaattatcttcaaa
ggaaagaaatatcattggttattatacatacctcttatgctttcttttag
aaaagatctcactatgtagccttggctacctgtaactctctatgtaggcc
agactggactggagctcagagagatcctcctgtctctgcctccctccaca
tgcttagaataaagacatgtaccaccatacccagtctctatcctccctat
aaaaatatatttatttagccttttatataaatttctatatttattgatac
aactaagtttcctagttagcttaactgctgctgactgacttcagtcggga
aaactctgagttccagttacgggtgagcaaggagttggcgcggagggggg
gggggggg

gaattccacagaagcaaactttgagacaaaaatttctagacacctgctaa
tgtactttcctaaaaagatacttaagtgaataaactaaagaagctttatt
ctacttcatcaagtatatcttgatcctgattctccaaagcattagaatgt
aatacagagactaaaatcttgccaactttttgtccttgacattatccact
atatcagttattgccctggggaatacagtaaaaccacaattgcctttgga
agtgagcaagccaagaatataaaactggttctttggaaaagtttacaagc
acaaaacttgaagttagtagaaattccctgagtgacagaatgttaaatat
gatcttatgttggaattctctaaatggttaaaatataatttaataaaaat
aagttatctcatagcatgcaatatgtttgttatagcaattttgagggaaa
aatcattttaaatgaaataaatattttttttaatgatagcaagtgcatgc
ccagtggctactgtaatactcaatggcacaagagaaacttctacttgctt
ctttttgcatagatattaaataggataatccattcagtttcattgacatc
atttctgataacactgtgcagttttctttcctttctcattaccccctaac
ttctaaatagaataatgaattatttttgaaacataatcttaatgaattat
ttggattctccctttctcaaaagaagcaattatttcttcctatctactcc
atagtacttctatggatttctattctacaactaattttttttaaagcata
cttcatttcattggctacattaaagactccacaatgactggaattgggtc
ttatatttgcattgttcaacactgccagagttatagcatcaataatgttc
tcagtaaatgctggttaaaggaagaagtagggaataaatttccccttccc
tttggattttccagttcttacaacatctgttccttttttgtgtcttaacc
ctcaactaatttctttcctttcatatacaaactactgagatttttctact
tagtatcacttttataagctttctttgatgtcatatgagatgttagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47556192_47556705
seq2: B6Ng01-293E14.b_47_560

seq1  GAATTCTTCTCAACAGTAAATATAATTAATAAAAAGAAAGCTAAAAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAACAGTAAATATAATTAATAAAAAGAAAGCTAAAAGTGT  50

seq1  TTCAGGTATTATTTACTATTTGTATAAATGTTAATTTTCTTAATAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTATTATTTACTATTTGTATAAATGTTAATTTTCTTAATAAACAA  100

seq1  ATTAATCTTCAAAAATCTAGTCAAATTCCAATATGTTTTAAAAAATTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTTCAAAAATCTAGTCAAATTCCAATATGTTTTAAAAAATTATC  150

seq1  TTCAAAGGAAAGAAATATCATTGGTTATTATACATACCTCTTATGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGAAAGAAATATCATTGGTTATTATACATACCTCTTATGCTTTC  200

seq1  TTTTAGAAAAGATCTCACTATGTAGCCTTGGCTACCTGTAACTCTCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAAAGATCTCACTATGTAGCCTTGGCTACCTGTAACTCTCTATG  250

seq1  TAGGCCAGACTGGACTGGAGCTCAGAGAGATCCTCCTGTCTCTGCCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAGACTGGACTGGAGCTCAGAGAGATCCTCCTGTCTCTGCCTCCC  300

seq1  TCCACATGCTTAGAATAAAGACATGTACCACCATACCCAGTCTCTATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGCTTAGAATAAAGACATGTACCACCATACCCAGTCTCTATCCT  350

seq1  CCCTATAAAAATATATTTATTTAGCCTTTTATATAAATTTCTATATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAAAAATATATTTATTTAGCCTTTTATATAAATTTCTATATTTAT  400

seq1  TGATACAACTAAGTTTCCTAGTTAGCTTAACTGCTGCTGACTGACTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAACTAAGTTTCCTAGTTAGCTTAACTGCTGCTGACTGACTTCAG  450

seq1  TCGGGAAAACTCTGAGTTCCAGTTACGGGTGAGCAAGGAGTTGGCGCGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAAAACTCTGAGTTCCAGTTACGGGTGAGCAAGGAGTTGGCGCGGA  500

seq1  GGGGGGGGGGGGGG  514
      ||||||||||||||
seq2  GGGGGGGGGGGGGG  514


seq1: chr12_47612580_47613680
seq2: B6Ng01-293E14.g_66_1163 (reverse)

seq1  ATCTAACATCTCATTATGACATCAAAGAAAGCTTTATAAAAGTGATACTA  50
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  ATCTAACATCTCA-TATGACATCAAAGAAAGC-TTATAAAAGTGATACTA  48

seq1  AGTAGAAAATTCTTCAGTAAGTTTGTATATGAAAGGAAAGAAATTAGTTG  100
      ||||||||| || ||||| |||||||||||||||||||||||||||||||
seq2  AGTAGAAAAATC-TCAGT-AGTTTGTATATGAAAGGAAAGAAATTAGTTG  96

seq1  AGGGTTAAAGACACAAAAAAGGAACAGATGTTGTAAGAACTGGAAAATCC  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTT-AAGACACAAAAAAGGAACAGATGTTGTAAGAACTGGAAAATCC  145

seq1  AAAGGGAAGGGG-AATTTATTCCCTACTTCTTCCTTTAACCAGCATTTAC  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGGGGAAATTTATTCCCTACTTCTTCCTTTAACCAGCATTTAC  195

seq1  TGAGAACATTATTGATGCTATAACTCTGGCAGTGTTGAACAATGCAAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATTATTGATGCTATAACTCTGGCAGTGTTGAACAATGCAAATA  245

seq1  TAAGACCCAATTCCAGTCATTGTGGAGTCTTTAATGTAGCCAATGAAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCAATTCCAGTCATTGTGGAGTCTTTAATGTAGCCAATGAAATG  295

seq1  AAGTATGCTTT-AAAAAAATTAGTTGTAGAATAGAAATCCATAGAAGTAC  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCTTTAAAAAAAATTAGTTGTAGAATAGAAATCCATAGAAGTAC  345

seq1  TATGGAGTAGATAGGAAGAAATAATTGCTTCTTTTGAGAAAGGGAGAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTAGATAGGAAGAAATAATTGCTTCTTTTGAGAAAGGGAGAATC  395

seq1  CAAATAATTCATTAAGATTATGTTTCAAAAATAATTCATTATTCTATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTCATTAAGATTATGTTTCAAAAATAATTCATTATTCTATTTA  445

seq1  GAAGTTAGGGGGTAATGAGAAAGGAAAGAAAACTGCACAGTGTTATCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGGGGGTAATGAGAAAGGAAAGAAAACTGCACAGTGTTATCAGA  495

seq1  AATGATGTCAATGAAACTGAATGGATTATCCTATTTAATATCTATGCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTCAATGAAACTGAATGGATTATCCTATTTAATATCTATGCAAA  545

seq1  AAGAAGCAAGTAGAAGTTTCTCTTGTGCCATTGAGTATTACAGTAGCCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAAGTAGAAGTTTCTCTTGTGCCATTGAGTATTACAGTAGCCAC  595

seq1  TGGGCATGCACTTGCTATCATTAAAAAAAATATTTATTTCATTTAAAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGCACTTGCTATCATTAAAAAAAATATTTATTTCATTTAAAATG  645

seq1  ATTTTTCCCTCAAAATTGCTATAACAAACATATTGCATGCTATGAGATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCTCAAAATTGCTATAACAAACATATTGCATGCTATGAGATAA  695

seq1  CTTATTTTTATTAAATTATATTTTAACCATTTAGAGAATTCCAACATAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTATTAAATTATATTTTAACCATTTAGAGAATTCCAACATAAG  745

seq1  ATCATATTTAACATTCTGTCACTCAGGGAATTTCTACTAACTTCAAGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTTAACATTCTGTCACTCAGGGAATTTCTACTAACTTCAAGTTT  795

seq1  TGTGCTTGTAAACTTTTCCAAAGAACCAGTTTTATATTCTTGGCTTGCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGTAAACTTTTCCAAAGAACCAGTTTTATATTCTTGGCTTGCTC  845

seq1  ACTTCCAAAGGCAATTGTGGTTTTACTGTATTCCCCAGGGCAATAACTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAAGGCAATTGTGGTTTTACTGTATTCCCCAGGGCAATAACTGA  895

seq1  TATAGTGGATAATGTCAAGGACAAAAAGTTGGCAAGATTTTAGTCTCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGGATAATGTCAAGGACAAAAAGTTGGCAAGATTTTAGTCTCTGT  945

seq1  ATTACATTCTAATGCTTTGGAGAATCAGGATCAAGATATACTTGATGAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTCTAATGCTTTGGAGAATCAGGATCAAGATATACTTGATGAAG  995

seq1  TAGAATAAAGCTTCTTTAGTTTATTCACTTAAGTATCTTTTTAGGAAAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAAGCTTCTTTAGTTTATTCACTTAAGTATCTTTTTAGGAAAGT  1045

seq1  ACATTAGCAGGTGTCTAGAAATTTTTGTCTCAAAGTTTGCTTCTGTGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCAGGTGTCTAGAAATTTTTGTCTCAAAGTTTGCTTCTGTGGAA  1095

seq1  TTC  1101
      |||
seq2  TTC  1098


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