BAC Information

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BAC

Clone NameB6Ng01-293F18
Chromosome12 (Build37)
Map Location 9,372,742 - 9,506,387
singlet/doubletdoublet
Overlap geneLOC633030, LOC100042238
Upstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneOsr1, LOC382567, Nt5c1b, Rdh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293F18.bB6Ng01-293F18.g
ACCGA089762GA089763
length1,1131,137
definitionB6Ng01-293F18.b B6Ng01-293F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,505,277 - 9,506,387)(9,372,742 - 9,373,862)
sequence
gaattccttgattataaaaaccagaaaaactacaagtatcttctttacaa
catttctaatctttagaactgtacctaattccagtttgcctcaaattcat
caagtgtgtaaggggtggagatggtcctatattctagtgacatttcccaa
acactgatgtcattcattttaacctcatgaaatccctaaaagttttgctt
acatttatttgctgttgggttcttagtcttctaactgttagcaacaacat
ctcagacagtttttttttaaaaaaaaaaaaactttgctaagttaaaaaaa
attattgcagactagaaactaatgacttcagtcgggtgtggagaaaacag
ttggtattttccagtctccacctgtaaccagctttaggctgtgagctact
ggtaagctgaaaagcagcagacatcacttgcctcccacagcatgttttcc
tctctcccttcttatctacagaatcccacttatttccacagtgaggagta
atgcacagagatagaatgtcttactctcaagcatgttgtagcttgaagta
gacaaggtgctatgagtgtgtcaaacttacaaagagatctgccacgtagg
caagggttgcctttgctgatttagaaggtttagctgggttgtgcctttta
tctgtcttcttctcccccccccccaacctggaacacagtgctcacatctc
aaggtaaaagctactttggaaaataaataaataaataaataaataaataa
aacctctaactataaagccattttccttgaactgcactgtttccaaactg
cccatctccacgtctcttattctatgggggaaaatgatcacatacagggc
tgaagagaggactcagcagttaggaacactgtctgcttttccagaggacc
tggcttcatttctcagcacccatacggcagcaaacactgtaactctcagc
ttcaagggaacaggatgctcttcttctggcttcagcaggcgtcaggcaca
atacactggtgcacagacagggcaaaacctccgaaaccacatagaaatag
gtaaaataaataatcttaccatactgcacacgctcagaccctaacactcc
tggtcacacatct
gaattcaagacaggaaaagcaaaacaaacaaagatgtagagtaagagtga
atgactggggctgttaaacacagagaggaaaggattgcaagtggccctgt
aaatggcccttctggtttatgaagcgaggagagagtagcaggaggaggat
gtgtagttagaagaccaagtggcagcttgagtaattactgcagtgggcag
gaactcaccacactcatggctgtgtgtcttatggagtggctgactatggg
gttttggatgggtaccaatgttgactgctgagaaatgcagggaagggaag
cactgtgagactcagctcatgatgccttgtgcttttgcctgcttgtacat
atatcatcaagtgtctcaccagtctgtccttcccagcatcagtcttgtac
atcacaacaactggaaataccattatctgaacagaactgcgtttctgcag
agtccccaagtctcagtggataatctgacatcatagaacatgatggatca
tctcagaccatatgccctgaaagacgtacataccataggtaagccaaaga
ttatgtcacatgtgctctggtctctccattgaaactactgtccgccagta
gtttgggctccaaatgaaagcacagaggcaggaaaaagccagcacttgaa
gctctctatactaggagcatggggttacctcactagtcagtaatggccag
gcatgagttggcaggcggaccccctctctgtgtgctgttctttgctcagc
ccttcctgtttagttttatgcaccagcccccatttcttttgcaatcaggc
agatactgaatttctttattttaactagagtgaccagtttaaacaaagca
catcattttaattaaaagtcttacacatgcaagatacaaaaaagtaggat
acccaagatataaagatacaatttgctaaacacatgaaaactcaagaaga
atgaagaatgaagtgtggataccatgctcctcctttagaattgggaacaa
aacacctatgggaaggaagtacagaagaacaaaggttggaaactgtgacg
aaaggatggaccatctagagactgctatattccaggggattcccacccat
aattcagcttcccaaatgcctgacaccaattgcatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9505277_9506387
seq2: B6Ng01-293F18.b_48_1160 (reverse)

seq1  AGATGTGTGACAGGGAGTTGTTTGGGGTCTGTGCGTGTGCAGTATGGTAG  50
      |||||||||||  |||||   || ||||||| ||||||||||||||||| 
seq2  AGATGTGTGACCAGGAGT--GTTAGGGTCTGAGCGTGTGCAGTATGGTAA  48

seq1  GTTTTATTTTTATTTTACCTTATTTTCTATGT-GTTTCGG-TGTTTTG-C  97
      | |   | ||||||||||||   ||||||||| |||||||  |||||| |
seq2  GAT---TATTTATTTTACCT--ATTTCTATGTGGTTTCGGAGGTTTTGCC  93

seq1  CTGTCTGTGCA-CAGTGTA-TGTGCCTGACGCCTGCTGAAGCCAGAAG-A  144
      ||||||||||| ||||||| |||||||||||||||||||||||||||| |
seq2  CTGTCTGTGCACCAGTGTATTGTGCCTGACGCCTGCTGAAGCCAGAAGAA  143

seq1  GGGCATCCTGTTCCC-TGGAGCTG-GAGTTACAGTGTTTGCTGCCGTATG  192
      | ||||||||||||| || ||||| |||||||||||||||||||||||||
seq2  GAGCATCCTGTTCCCTTGAAGCTGAGAGTTACAGTGTTTGCTGCCGTATG  193

seq1  GGTGCTGAGAATTGAAGCCAGGTCCTCTGGAAAAGCAGACAGTGTTCCTA  242
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAGAAATGAAGCCAGGTCCTCTGGAAAAGCAGACAGTGTTCCTA  243

seq1  ACTGCTGAGTCCTCTCTTCAGCCCTGTATGTGATCATTTTCCCCCATAGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGTCCTCTCTTCAGCCCTGTATGTGATCATTTTCCCCCATAGA  293

seq1  ATAAGAGACGTGGAGATGGGCAGTTTGGAAACAGTGCAGTTCAAGG-AAA  341
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAAGAGACGTGGAGATGGGCAGTTTGGAAACAGTGCAGTTCAAGGAAAA  343

seq1  TGGCTTTATAGTTAGAGGTTTTATTTATTTATTTATTTATTTATTTATTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTATAGTTAGAGGTTTTATTTATTTATTTATTTATTTATTTATTT  393

seq1  TCCAAAGTAGCTTTTACCTTGAGATGTGAGCACTGTGTTCCAGGTTGGGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTAGCTTTTACCTTGAGATGTGAGCACTGTGTTCCAGGTTGGGG  443

seq1  GGGGGGGAGAAGAAGACAGATAAAAGGCACAACCCAGCTAAACCTTCTAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGAGAAGAAGACAGATAAAAGGCACAACCCAGCTAAACCTTCTAA  493

seq1  ATCAGCAAAGGCAACCCTTGCCTACGTGGCAGATCTCTTTGTAAGTTTGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAAAGGCAACCCTTGCCTACGTGGCAGATCTCTTTGTAAGTTTGA  543

seq1  CACACTCATAGCACCTTGTCTACTTCAAGCTACAACATGCTTGAGAGTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATAGCACCTTGTCTACTTCAAGCTACAACATGCTTGAGAGTAA  593

seq1  GACATTCTATCTCTGTGCATTACTCCTCACTGTGGAAATAAGTGGGATTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTATCTCTGTGCATTACTCCTCACTGTGGAAATAAGTGGGATTC  643

seq1  TGTAGATAAGAAGGGAGAGAGGAAAACATGCTGTGGGAGGCAAGTGATGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATAAGAAGGGAGAGAGGAAAACATGCTGTGGGAGGCAAGTGATGT  693

seq1  CTGCTGCTTTTCAGCTTACCAGTAGCTCACAGCCTAAAGCTGGTTACAGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTTTCAGCTTACCAGTAGCTCACAGCCTAAAGCTGGTTACAGG  743

seq1  TGGAGACTGGAAAATACCAACTGTTTTCTCCACACCCGACTGAAGTCATT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTGGAAAATACCAACTGTTTTCTCCACACCCGACTGAAGTCATT  793

seq1  AGTTTCTAGTCTGCAATAATTTTTTTTAACTTAGCAAAGTTTTTTTTTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGTCTGCAATAATTTTTTTTAACTTAGCAAAGTTTTTTTTTTT  843

seq1  TTAAAAAAAAACTGTCTGAGATGTTGTTGCTAACAGTTAGAAGACTAAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAACTGTCTGAGATGTTGTTGCTAACAGTTAGAAGACTAAGA  893

seq1  ACCCAACAGCAAATAAATGTAAGCAAAACTTTTAGGGATTTCATGAGGTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAGCAAATAAATGTAAGCAAAACTTTTAGGGATTTCATGAGGTT  943

seq1  AAAATGAATGACATCAGTGTTTGGGAAATGTCACTAGAATATAGGACCAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATGACATCAGTGTTTGGGAAATGTCACTAGAATATAGGACCAT  993

seq1  CTCCACCCCTTACACACTTGATGAATTTGAGGCAAACTGGAATTAGGTAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCCTTACACACTTGATGAATTTGAGGCAAACTGGAATTAGGTAC  1043

seq1  AGTTCTAAAGATTAGAAATGTTGTAAAGAAGATACTTGTAGTTTTTCTGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAAGATTAGAAATGTTGTAAAGAAGATACTTGTAGTTTTTCTGG  1093

seq1  TTTTTATAATCAAGGAATTC  1111
      ||||||||||||||||||||
seq2  TTTTTATAATCAAGGAATTC  1113

seq1: chr12_9372742_9373862
seq2: B6Ng01-293F18.g_67_1203

seq1  GAATTCAAGACAGGAAAAGCAAAACAAACAAAGATGTAGAGTAAGAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACAGGAAAAGCAAAACAAACAAAGATGTAGAGTAAGAGTGA  50

seq1  ATGACTGGGGCTGTTAAACACAGAGAGGAAAGGATTGCAAGTGGCCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGGGCTGTTAAACACAGAGAGGAAAGGATTGCAAGTGGCCCTGT  100

seq1  AAATGGCCCTTCTGGTTTATGAAGCGAGGAGAGAGTAGCAGGAGGAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCCTTCTGGTTTATGAAGCGAGGAGAGAGTAGCAGGAGGAGGAT  150

seq1  GTGTAGTTAGAAGACCAAGTGGCAGCTTGAGTAATTACTGCAGTGGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTAGAAGACCAAGTGGCAGCTTGAGTAATTACTGCAGTGGGCAG  200

seq1  GAACTCACCACACTCATGGCTGTGTGTCTTATGGAGTGGCTGACTATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACCACACTCATGGCTGTGTGTCTTATGGAGTGGCTGACTATGGG  250

seq1  GTTTTGGATGGGTACCAATGTTGACTGCTGAGAAATGCAGGGAAGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGATGGGTACCAATGTTGACTGCTGAGAAATGCAGGGAAGGGAAG  300

seq1  CACTGTGAGACTCAGCTCATGATGCCTTGTGCTTTTGCCTGCTTGTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAGACTCAGCTCATGATGCCTTGTGCTTTTGCCTGCTTGTACAT  350

seq1  ATATCATCAAGTGTCTCACCAGTCTGTCCTTCCCAGCATCAGTCTTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCAAGTGTCTCACCAGTCTGTCCTTCCCAGCATCAGTCTTGTAC  400

seq1  ATCACAACAACTGGAAATACCATTATCTGAACAGAACTGCGTTTCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACAACTGGAAATACCATTATCTGAACAGAACTGCGTTTCTGCAG  450

seq1  AGTCCCCAAGTCTCAGTGGATAATCTGACATCATAGAACATGATGGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCAAGTCTCAGTGGATAATCTGACATCATAGAACATGATGGATCA  500

seq1  TCTCAGACCATATGCCCTGAAAGACGTACATACCATAGGTAAGCCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACCATATGCCCTGAAAGACGTACATACCATAGGTAAGCCAAAGA  550

seq1  TTATGTCACATGTGCTCTGGTCTCTCCATTGAAACTACTGTCCGCCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCACATGTGCTCTGGTCTCTCCATTGAAACTACTGTCCGCCAGTA  600

seq1  GTTTGGGCTCCAAATGAAAGCACAGAGGCAGGAAAAAGCCAGCACTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCTCCAAATGAAAGCACAGAGGCAGGAAAAAGCCAGCACTTGAA  650

seq1  GCTCTCTATACTAGGAGCATGGGGTTACCTCACTAGTCAGTAATGGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTATACTAGGAGCATGGGGTTACCTCACTAGTCAGTAATGGCCAG  700

seq1  GCATGAGTTGGCAGGCGGACCCCCTCTCTGTGTGCTGTTC-TTGCTCAGC  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCATGAGTTGGCAGGCGGACCCCCTCTCTGTGTGCTGTTCTTTGCTCAGC  750

seq1  CCTTCCTGTTTAGTTTTATGCACCAGCCCCCATTTCTTTTGCAATCAGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTTTAGTTTTATGCACCAGCCCCCATTTCTTTTGCAATCAGGC  800

seq1  AGATACTGAATTTCTTTATTTTAACTAGAGTGACCAG-TTAAACAAAGCA  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGATACTGAATTTCTTTATTTTAACTAGAGTGACCAGTTTAAACAAAGCA  850

seq1  CATCATTTTAATTAAAAGTCTTACACATGCAAGATACAAAAAAGTAGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTAATTAAAAGTCTTACACATGCAAGATACAAAAAAGTAGGAT  900

seq1  ACCCAAGATAT-AAGATACAATTTGCTAAACACATG-AAACTCAAGAAGA  946
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  ACCCAAGATATAAAGATACAATTTGCTAAACACATGAAAACTCAAGAAGA  950

seq1  ATGAAGAATGAAGTGTGGATACCATGCCCCTCC-TTAGAATTGGGAACAA  995
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  ATGAAGAATGAAGTGTGGATACCATGCTCCTCCTTTAGAATTGGGAACAA  1000

seq1  AACACCCAT-GGAAGGAGTTACAGA--GACAAAGTTTGG-AGCTGTGACG  1041
      |||||| || |||||||  ||||||   |||||| |||| | ||||||||
seq2  AACACCTATGGGAAGGAAGTACAGAAGAACAAAGGTTGGAAACTGTGACG  1050

seq1  AAAGGATGGACCATCTAGAGACTGCCATA-TCCAGGG--ATCCACCCCAT  1088
      ||||||||||||||||||||||||| ||| |||||||   |||  |||||
seq2  AAAGGATGGACCATCTAGAGACTGCTATATTCCAGGGGATTCCCACCCAT  1100

seq1  AA-TCAGCTT-CCAAATG-CTGACACC-ATTGCATAC  1121
      || ||||||| ||||||| |||||||| |||||||||
seq2  AATTCAGCTTCCCAAATGCCTGACACCAATTGCATAC  1137