BAC Information

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BAC

Clone NameB6Ng01-293P20
Chromosome12 (Build37)
Map Location 59,370,496 - 59,519,182
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293P20.bB6Ng01-293P20.g
ACCGA090235GA090236
length9411,099
definitionB6Ng01-293P20.b B6Ng01-293P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,518,244 - 59,519,182)(59,370,496 - 59,371,597)
sequence
gaattctttgtttagctctgaaccccattttttaatggggctatttgaat
ttctggagtccacctttttgagctttttctatatattgaataataacttt
ctatatattggataataatttttctgcatactgtatttctaataatattt
tatagagttctaggatttcaccaccacaaatttaaatagattctagtaat
aattttttttttaaccataaaagtggatgggaacacatataaaggctcag
gggtataaagggactttctaacctgacacctgagttcagtcctggttttc
cacaagtagcctgaccatacacacacacacacacatgcacacacacacac
acacacacacacacacacacacacacacagaataaatgtaaaaagtattt
aagaatatggcaagcagttttataagtcttaatggagtccacactctggc
attaccacaatcatcttagtgtccttctcttgatcagtctgatctgaaga
tcttgacacagaaagagatttacagtacagttggatgtcaagaccaacat
caagtaaagtttcttctgttggtgattgagagaaagcgactttgggcagt
cataagcgagagtaaagtaaaggctatctgaattgcaatggatgtggttg
aaaggaaactatttctctcacctcctcttacttacttacagtcatgtaca
atgcatacagatccattccagcttgcttatatctccatccatattcattg
acaaattttacagacactgcatacttaagccattgttattttctttctag
aacatgactatttgaacattaaatgttagaaatgtaatttaatacttaca
agtgataacagtagaaatgggaattttttttcttaaaaaaatcactgtta
agagaggaagagagaaagggggagggggaagaatgggggaa
gaattccttgggggcattttcaatggaaaaatagctcctctgtttggcac
ttgccttaaagtttaatttgtacttctatttgtttattttttaaataccg
gtgttggctggttggggcaaatatttacatcgaggtgacaaacaatagcc
acaggtcctgattatggtggtttcctcaccagtacatgtgctcaaaccct
cttgaggatattaggtcatatgcgaatgagttcacggtcttataaaatca
catctgtatgtgatttttatccttgaactatggaaaatcacagctcctgt
gattatctgccaacatttatagaagaaaagtgtaaaaggacacaaataaa
agctcaaaaatttttattttgaaaatcaaactatttattcaatcataatg
cacattcgacaccggaaaataatactctgtaatttgaaaaatgattgaat
cagctactccaggttccaatggctgttttgttttaatgtgcacacttgct
cattgggaagtgtgggagaattaaagaaagaaaggtttggggggaaaaaa
aggttaaaatcagcattattgttaggtttcaatctgggacaaatgactga
gttgcctatttaccatatcaaagaggacactggctaccaggttctcttgg
catcccttggtccctatctgttacagagccctcctggctggcatacccca
tcccatttcctgaactctccatcacagagacctgggctgtccttctgatc
tggttacccactctctttgtacctttggactcttggctgctgcacctggt
tccctctcttccctctcctctcccctccccatctccccacatgggcctag
ctatttctacagtaaacctcctccaccatacctaggaagaagggtcatgt
cttatcatttctttttttattatttcattcaattatgaatgttcttttat
gtttgtagcaatttagagatgttatacacttatatgacatgtgtcacttg
tctgtcttgattcacaatggcaatgtcatgtgcttagaacagactacatt
taggccctctaagaggccaactgcttgtaagtgtttcgaacccagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59518244_59519182
seq2: B6Ng01-293P20.b_46_985 (reverse)

seq1  TCCCCCA-TCTTCCCCCTCCCCCTTTTCTCTCTTCCTCTCTTAACAGTGA  49
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCCCCATTCTTCCCCCTCCCCC-TTTCTCTCTTCCTCTCTTAACAGTGA  49

seq1  TTTTTTTAAG-AAAAAAATTCCCATTTCTACTGTTATCACTTGTAAGTAT  98
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAGAAAAAAAATTCCCATTTCTACTGTTATCACTTGTAAGTAT  99

seq1  TAAATTACATTTCTAACATTTAATGTTCAAATAGTCATGTTCTAGAAAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACATTTCTAACATTTAATGTTCAAATAGTCATGTTCTAGAAAGA  149

seq1  AAATAACAATGGCTTAAGTATGCAGTGTCTGTAAAATTTGTCAATGAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAATGGCTTAAGTATGCAGTGTCTGTAAAATTTGTCAATGAATA  199

seq1  TGGATGGAGATATAAGCAAGCTGGAATGGATCTGTATGCATTGTACATGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGATATAAGCAAGCTGGAATGGATCTGTATGCATTGTACATGA  249

seq1  CTGTAAGTAAGTAAGAGGAGGTGAGAGAAATAGTTTCCTTTCAACCACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTAAGTAAGAGGAGGTGAGAGAAATAGTTTCCTTTCAACCACAT  299

seq1  CCATTGCAATTCAGATAGCCTTTACTTTACTCTCGCTTATGACTGCCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCAATTCAGATAGCCTTTACTTTACTCTCGCTTATGACTGCCCAA  349

seq1  AGTCGCTTTCTCTCAATCACCAACAGAAGAAACTTTACTTGATGTTGGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCTTTCTCTCAATCACCAACAGAAGAAACTTTACTTGATGTTGGTC  399

seq1  TTGACATCCAACTGTACTGTAAATCTCTTTCTGTGTCAAGATCTTCAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCCAACTGTACTGTAAATCTCTTTCTGTGTCAAGATCTTCAGAT  449

seq1  CAGACTGATCAAGAGAAGGACACTAAGATGATTGTGGTAATGCCAGAGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGATCAAGAGAAGGACACTAAGATGATTGTGGTAATGCCAGAGTG  499

seq1  TGGACTCCATTAAGACTTATAAAACTGCTTGCCATATTCTTAAATACTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCCATTAAGACTTATAAAACTGCTTGCCATATTCTTAAATACTTT  549

seq1  TTACATTTATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  599

seq1  TGTGCATGTGTGTGTGTGTGTGTATGGTCAGGCTACTTGTGGAAAACCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGTGTGTGTGTGTGTATGGTCAGGCTACTTGTGGAAAACCAG  649

seq1  GACTGAACTCAGGTGTCAGGTTAGAAAGTCCCTTTATACCCCTGAGCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACTCAGGTGTCAGGTTAGAAAGTCCCTTTATACCCCTGAGCCTT  699

seq1  TATATGTGTTCCCATCCACTTTTATGGTTAAAAAAAAAATTATTACTAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTTCCCATCCACTTTTATGGTTAAAAAAAAAATTATTACTAGA  749

seq1  ATCTATTTAAATTTGTGGTGGTGAAATCCTAGAACTCTATAAAATATTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTAAATTTGTGGTGGTGAAATCCTAGAACTCTATAAAATATTAT  799

seq1  TAGAAATACAGTATGCAGAAAAATTATTATCCAATATATAGAAAGTTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACAGTATGCAGAAAAATTATTATCCAATATATAGAAAGTTATT  849

seq1  ATTCAATATATAGAAAAAGCTCAAAAAGGTGGACTCCAGAAATTCAAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATATAGAAAAAGCTCAAAAAGGTGGACTCCAGAAATTCAAATA  899

seq1  GCCCCATTAAAAAATGGGGTTCAGAGCTAAACAAAGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATTAAAAAATGGGGTTCAGAGCTAAACAAAGAATTC  940

seq1: chr12_59370496_59371597
seq2: B6Ng01-293P20.g_66_1164

seq1  GAATTCCTTGGGGGCATTTTCAATGGAAAAATAGCTCCTCTGTTTGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGGGGCATTTTCAATGGAAAAATAGCTCCTCTGTTTGGCAC  50

seq1  TTGCCTTAAAGTTTAATTTGTACTTCTATTTGTTTATTTTTTAAATACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTAAAGTTTAATTTGTACTTCTATTTGTTTATTTTTTAAATACCG  100

seq1  GTGTTGGCTGGTTGGGGCAAATATTTACATCGAGGTGACAAACAATAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGCTGGTTGGGGCAAATATTTACATCGAGGTGACAAACAATAGCC  150

seq1  ACAGGTCCTGATTATGGTGGTTTCCTCACCAGTACATGTGCTCAAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCCTGATTATGGTGGTTTCCTCACCAGTACATGTGCTCAAACCCT  200

seq1  CTTGAGGATATTAGGTCATATGCGAATGAGTTCACGGTCTTATAAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGATATTAGGTCATATGCGAATGAGTTCACGGTCTTATAAAATCA  250

seq1  CATCTGTATGTGATTTTTATCCTTGAACTATGGAAAATCACAGCTCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTATGTGATTTTTATCCTTGAACTATGGAAAATCACAGCTCCTGT  300

seq1  GATTATCTGCCAACATTTATAGAAGAAAAGTGTAAAAGGACACAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTGCCAACATTTATAGAAGAAAAGTGTAAAAGGACACAAATAAA  350

seq1  AGCTCAAAAATTTTTATTTTGAAAATCAAACTATTTATTCAATCATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAAATTTTTATTTTGAAAATCAAACTATTTATTCAATCATAATG  400

seq1  CACATTCGACACCGGAAAATAATACTCTGTAATTTGAAAAATGATTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCGACACCGGAAAATAATACTCTGTAATTTGAAAAATGATTGAAT  450

seq1  CAGCTACTCCAGGTTCCAATGGCTGTTTTGTTTTAATGTGCACACTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTCCAGGTTCCAATGGCTGTTTTGTTTTAATGTGCACACTTGCT  500

seq1  CATTGGGAAGTGTGGGAGAATTAAAGAAAGAAAGGTTTGGGGGGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAAGTGTGGGAGAATTAAAGAAAGAAAGGTTTGGGGGGAAAAAA  550

seq1  AGGTTAAAATCAGCATTATTGTTAGGTTTCAATCTGGGACAAATGACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAATCAGCATTATTGTTAGGTTTCAATCTGGGACAAATGACTGA  600

seq1  GTTGCCTATTTACCATATCAAAGAGGACACTGGCTACCAGGTTCTCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTATTTACCATATCAAAGAGGACACTGGCTACCAGGTTCTCTTGG  650

seq1  CATCCCTTGGTCCCTATCTGTTACAGAGCCCTCCTGGCTGGCATACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTGGTCCCTATCTGTTACAGAGCCCTCCTGGCTGGCATACCCCA  700

seq1  TCCCATTTCCTGAACTCTCCATCACAGAGACCTGGGCTGTCCTTCTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTCCTGAACTCTCCATCACAGAGACCTGGGCTGTCCTTCTGATC  750

seq1  TGGTTACCCACTCTCTTTGTACCTTTGGACTCTTGGCTGCTGCACCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACCCACTCTCTTTGTACCTTTGGACTCTTGGCTGCTGCACCTGGT  800

seq1  TCCCTCTCTTCCCTCTCCTCTCCCCTCCCCATCTCCCCACATGGGCCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTTCCCTCTCCTCTCCCCTCCCCATCTCCCCACATGGGCCTAG  850

seq1  CTATTTCTACAGTAAACCTCCTCCACCATACCTAGGAAGAA-GGTCATGT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTATTTCTACAGTAAACCTCCTCCACCATACCTAGGAAGAAGGGTCATGT  900

seq1  CTTATCATTTC-TTTTTTATTATTTTCATTCAATTATGAATGTTCTTTTA  948
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  CTTATCATTTCTTTTTTTATTA-TTTCATTCAATTATGAATGTTCTTTTA  949

seq1  TGTTTGTAGCAATTTAGAGAATGTTATACACTTATAATGACATGTGTCAC  998
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TGTTTGTAGCAATTTAGAG-ATGTTATACACTTAT-ATGACATGTGTCAC  997

seq1  TTGTCTGTCTTGATTCACAATGGCAAATGTCATGTGCTTAGAAACAGACT  1048
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TTGTCTGTCTTGATTCACAATGGC-AATGTCATGTGCTTAG-AACAGACT  1045

seq1  ACATTTA-GCCCTCTTAAAGAGGCAACCTGCTTGTAAGTG-TTCGAAACC  1096
      ||||||| |||||||  ||||||| | ||||||||||||| |||||| ||
seq2  ACATTTAGGCCCTCT--AAGAGGCCAACTGCTTGTAAGTGTTTCGAACCC  1093

seq1  AGAATG  1102
      ||||||
seq2  AGAATG  1099