BAC Information

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BAC

Clone NameB6Ng01-294L01
Chromosome12 (Build37)9 (Build37)
Map Location 13,465,840 - 13,466,9877,727,403 - 7,727,487
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189
Downstream geneLOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294L01.bB6Ng01-294L01.g
ACCGA090754GA090755
length1,143107
definitionB6Ng01-294L01.b B6Ng01-294L01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,465,840 - 13,466,987)(7,727,403 - 7,727,487)
sequence
gaattcattagagctatttttgaaactaagaacagaccatgtgtggctct
gttacaagatttctggcttctaaaagcggtaacttagagtatatactgga
tcttgtctgttgcattcagtactctgatccacaccttatgcagccatcct
gtaaagagttttctttcgtctttttacacttttatataagtgtgctttgc
atactgaccactctgaccttcctaactccctctatgtcagcacttccctc
tccccatgatctcccttacaagtcactgttttgtatttggacgtgatgtc
atttgtgtggcagtgggtttagagttattagttgaagcatggaaggccag
cataatgtacacaactaaagatggtgactccctcctagaatctaccgata
aagaaccgttcagaggtaagggccccaagagctcctcccatctcctgact
gctgacagaactggtcttgtatgcacccagtgcacagaactgatgttgat
gtgagctactgattacagtatctgtaatgagactagggagcagtggttca
cagccgtgcacacgaactttctgttcctacataccacaggtcacacaaca
taccctctcttctccctttttaatgatttatttttatttttaaattatgt
atacatgtgtctctacacacagggatgcacacaggattacgtgtgcctac
aactgccaaaagaaggcattggatctgttagaactggagttacaaatggt
tgagagctttctcatgcaggtgttgggtcacctcaggtcctcagcaaaaa
catgctcttaacccctgggccatcttttcagctaccttgtacagtgtctt
aagcagatgagaagaacatggataactcgctgatgtcaggcatcttgctt
gtttaaatccaatgggaaaggacagagtgaatgtgtagcaggtatagtta
gtgatgagtgggctgagagctttgtactctttaaattcaaggaaagtaca
gtacagaactatgcatgtagtaggatgttgccatggctgtgatggctatt
tcatatcatctgataaatatggagctgagttcttcagagataatcagttc
attctcttgacgccaactggagttttcacagtaggcattaact
aagcagggcaggaacttaggggtaggtgctgatgcagatgcaatagaggg
gtgctgcttactggcttgctcatcatggcttgctcaacctgttttcttat
agaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13465840_13466987
seq2: B6Ng01-294L01.b_46_1188 (reverse)

seq1  AGTTAATGCCTACTGT--AAACT-CAGGTGCGCTCAGAGGAATG-ACTGA  46
      ||||||||||||||||  ||||| ||| ||   |||   ||||| |||||
seq2  AGTTAATGCCTACTGTGAAAACTCCAGTTGGCGTCAAGAGAATGAACTGA  50

seq1  TTAATCTCCTGAGAACTTCAGCTTCCATATTTAATCAAGATGATAATGAA  96
      || |||||   ||||| ||||| ||||||||| ||| ||||||| |||||
seq2  TT-ATCTCTGAAGAAC-TCAGC-TCCATATTT-ATC-AGATGAT-ATGAA  94

seq1  AATTAACCATCACAACCATGGCAACATCCTACTACATGCATAGTTCTGTA  146
      |  || |||||||| |||||||||||||||||||||||||||||||||||
seq2  A--TAGCCATCACAGCCATGGCAACATCCTACTACATGCATAGTTCTGTA  142

seq1  CTGTACTTTCCTTGAATTTAAAAGAGTACAAAGCTCTCAGCCCACTCATC  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTACTTTCCTTGAATTT-AAAGAGTACAAAGCTCTCAGCCCACTCATC  191

seq1  ACTAACTATACCTGCTACACATTCACTCTGTCCTTTCCCATTGGATTTAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTATACCTGCTACACATTCACTCTGTCCTTTCCCATTGGATTTAA  241

seq1  ACAAGCAAGATGCCTGACATCAGCGAGTTATCCATGTTCTTCTCATCTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGATGCCTGACATCAGCGAGTTATCCATGTTCTTCTCATCTGC  291

seq1  TTAAGACACTGTACAAGGTAGCTGAAAAGATGGCCCAGGGGTTAAGAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACACTGTACAAGGTAGCTGAAAAGATGGCCCAGGGGTTAAGAGCA  341

seq1  TGTTTTTGCTGAGGACCTGAGGTGACCCAACACCTGCATGAGAAAGCTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGCTGAGGACCTGAGGTGACCCAACACCTGCATGAGAAAGCTCT  391

seq1  CAACCATTTGTAACTCCAGTTCTAACAGATCCAATGCCTTCTTTTGGCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTTGTAACTCCAGTTCTAACAGATCCAATGCCTTCTTTTGGCAG  441

seq1  TTGTAGGCACACGTAATCCTGTGTGCATCCCTGTGTGTAGAGACACATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCACACGTAATCCTGTGTGCATCCCTGTGTGTAGAGACACATGT  491

seq1  ATACATAATTTAAAAATAAAAATAAATCATTAAAAAGGGAGAAGAGAGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAATTTAAAAATAAAAATAAATCATTAAAAAGGGAGAAGAGAGGG  541

seq1  TATGTTGTGTGACCTGTGGTATGTAGGAACAGAAAGTTCGTGTGCACGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTGTGACCTGTGGTATGTAGGAACAGAAAGTTCGTGTGCACGGC  591

seq1  TGTGAACCACTGCTCCCTAGTCTCATTACAGATACTGTAATCAGTAGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACCACTGCTCCCTAGTCTCATTACAGATACTGTAATCAGTAGCTC  641

seq1  ACATCAACATCAGTTCTGTGCACTGGGTGCATACAAGACCAGTTCTGTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACATCAGTTCTGTGCACTGGGTGCATACAAGACCAGTTCTGTCA  691

seq1  GCAGTCAGGAGATGGGAGGAGCTCTTGGGGCCCTTACCTCTGAACGGTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGGAGATGGGAGGAGCTCTTGGGGCCCTTACCTCTGAACGGTTC  741

seq1  TTTATCGGTAGATTCTAGGAGGGAGTCACCATCTTTAGTTGTGTACATTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGGTAGATTCTAGGAGGGAGTCACCATCTTTAGTTGTGTACATTA  791

seq1  TGCTGGCCTTCCATGCTTCAACTAATAACTCTAAACCCACTGCCACACAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCTTCCATGCTTCAACTAATAACTCTAAACCCACTGCCACACAA  841

seq1  ATGACATCACGTCCAAATACAAAACAGTGACTTGTAAGGGAGATCATGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCACGTCCAAATACAAAACAGTGACTTGTAAGGGAGATCATGGG  891

seq1  GAGAGGGAAGTGCTGACATAGAGGGAGTTAGGAAGGTCAGAGTGGTCAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGTGCTGACATAGAGGGAGTTAGGAAGGTCAGAGTGGTCAGT  941

seq1  ATGCAAAGCACACTTATATAAAAGTGTAAAAAGACGAAAGAAAACTCTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGCACACTTATATAAAAGTGTAAAAAGACGAAAGAAAACTCTTT  991

seq1  ACAGGATGGCTGCATAAGGTGTGGATCAGAGTACTGAATGCAACAGACAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGGCTGCATAAGGTGTGGATCAGAGTACTGAATGCAACAGACAA  1041

seq1  GATCCAGTATATACTCTAAGTTACCGCTTTTAGAAGCCAGAAATCTTGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTATATACTCTAAGTTACCGCTTTTAGAAGCCAGAAATCTTGTA  1091

seq1  ACAGAGCCACACATGGTCTGTTCTTAGTTTCAAAAATAGCTCTAATGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCACACATGGTCTGTTCTTAGTTTCAAAAATAGCTCTAATGAAT  1141

seq1  TC  1148
      ||
seq2  TC  1143

seq1: chr9_7727403_7727487
seq2: B6Ng01-294L01.g_94_178 (reverse)

seq1  GGGTTCTATAAGAAAGCTGGCTGAGCAAGCCATGATGAGCAAGCCAGTAA  50
      ||||||||||||||| | || |||||||||||||||||||||||||||||
seq2  GGGTTCTATAAGAAAACAGGTTGAGCAAGCCATGATGAGCAAGCCAGTAA  50

seq1  GCAGCATCCCTCCATGGCCTCTGCATCAGCTCCTA  85
      |||||| ||||| || || ||||||||||| ||||
seq2  GCAGCACCCCTCTATTGCATCTGCATCAGCACCTA  85