BAC Information

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BAC

Clone NameB6Ng01-295A10
Chromosome12 (Build37)
Map Location 82,944,268 - 83,111,287
singlet/doubletdoublet
Overlap genePcnx
Upstream gene4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9
Downstream geneSipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295A10.bB6Ng01-295A10.g
ACCGA091003GA091004
length2791,049
definitionB6Ng01-295A10.b B6Ng01-295A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,111,009 - 83,111,287)(82,944,268 - 82,945,312)
sequence
cagtgagccttgacagcaacatggcttccacggaaggaggatatcactgg
ccagaaatcagagacttggctggggatgcagcttcctctctaacagcctg
agactgtctcaaaacagaacgaaccaaaccagcgacaacagcaacacaag
cacagaggtaaaattcaggggcttgggaaggagagaatgtggtgacttag
actagaaacctttatatctagtttactgcacagtagaaaaggaccagagg
ggtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcctcaccaaaggcatcattagcaaaacccctatgctagtaagttc
taaatagaggcatgattgtagggtagtaaacgagactaggaacaaaataa
gatggtttgtgtgaatgatctgtaggaacctctatgatttaaaaaaaaaa
aaaaacaagcttaactttgggagtacttgaaaatgatactaaatggcgga
aacagtagggtattcattctagaaggagcagatgagctcatttgtgaata
tgggcctgtgtgtctgctgcttctctaacatcaaggggagtaattttcaa
aatctcggaatgaaagctcaggtggacggcagaatggaaaggactcagag
acctgccagaaaccaggagcaaggcaggcattcccagaaggtcttggcag
acagaggagcaggctagctccccgtgccagccagagtgagagatgaactg
tactgggtggagcccagttggcccgtgctgaggtctgcgtagcactgaaa
tccacattggctgctctgggggtggggtcaggtggggctcagggtagagc
ttctcacctggagggggaggttctgggcagaactggggctgttaggagat
taaatggaacaagaacctaacatccaggctgttggggagttgatcttcag
gcattgagatgactatgggaaccagagaacaggtttatataggtttaatg
gcaagcaaggctgacttgaggctattctttgagaatccttaatttatttt
aattcaaattttaattatttgtttcatttaaatgatttattaacaaataa
taatattattttatattcttataattatattgttataataagtaactgat
ttattaataacataatttaattaattatcataaattaaaggatcctttaa
ttcctcaggctatagagatacttccaggggctacaaggcacccaactaag
actaatcaccaattctagaactaggcagctgacttctaagcagcttagaa
ggtgtcttcaagcgtttatatctaccttgaaaaggaacgatcagagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_83111009_83111287
seq2: B6Ng01-295A10.b_56_334 (reverse)

seq1  ACACACACACACACACACACACACACACCCCTCTGGTCCTTTTCTACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACCCCTCTGGTCCTTTTCTACTGT  50

seq1  GCAGTAAACTAGATATAAAGGTTTCTAGTCTAAGTCACCACATTCTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAACTAGATATAAAGGTTTCTAGTCTAAGTCACCACATTCTCTCC  100

seq1  TTCCCAAGCCCCTGAATTTTACCTCTGTGCTTGTGTTGCTGTTGTCGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGCCCCTGAATTTTACCTCTGTGCTTGTGTTGCTGTTGTCGCTG  150

seq1  GTTTGGTTCGTTCTGTTTTGAGACAGTCTCAGGCTGTTAGAGAGGAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTCGTTCTGTTTTGAGACAGTCTCAGGCTGTTAGAGAGGAAGCT  200

seq1  GCATCCCCAGCCAAGTCTCTGATTTCTGGCCAGTGATATCCTCCTTCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCCAGCCAAGTCTCTGATTTCTGGCCAGTGATATCCTCCTTCCGT  250

seq1  GGAAGCCATGTTGCTGTCAAGGCTCACTG  279
      |||||||||||||||||||||||||||||
seq2  GGAAGCCATGTTGCTGTCAAGGCTCACTG  279

seq1: chr12_82944268_82945312
seq2: B6Ng01-295A10.g_67_1115

seq1  GAATTCCTCACCAAAGGCATCATTAGCAAAACCCCTATGCTAGTAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACCAAAGGCATCATTAGCAAAACCCCTATGCTAGTAAGTTC  50

seq1  TAAATAGAGGCATGATTGTAGGGTAGTAAACGAGACTAGGAACAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAGGCATGATTGTAGGGTAGTAAACGAGACTAGGAACAAAATAA  100

seq1  GATGGTTTGTGTGAATGATCTGTAGGAACCTCTATGATTTAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTGTGTGAATGATCTGTAGGAACCTCTATGATTTAAAAAAAAAA  150

seq1  AAAAACAAGCTTAACTTTGGGAGTACTTGAAAATGATACTAAATGGCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGCTTAACTTTGGGAGTACTTGAAAATGATACTAAATGGCGGA  200

seq1  AACAGTAGGGTATTCATTCTAGAAGGAGCAGATGAGCTCATTTGTGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGGGTATTCATTCTAGAAGGAGCAGATGAGCTCATTTGTGAATA  250

seq1  TGGGCCTGTGTGTCTGCTGCTTCTCTAACATCAAGGGGAGTAATTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGTGTGTCTGCTGCTTCTCTAACATCAAGGGGAGTAATTTTCAA  300

seq1  AATCTCGGAATGAAAGCTCAGGTGGACGGCAGAATGGAAAGGACTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCGGAATGAAAGCTCAGGTGGACGGCAGAATGGAAAGGACTCAGAG  350

seq1  ACCTGCCAGAAACCAGGAGCAAGGCAGGCATTCCCAGAAGGTCTTGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAGAAACCAGGAGCAAGGCAGGCATTCCCAGAAGGTCTTGGCAG  400

seq1  ACAGAGGAGCAGGCTAGCTCCCCGTGCCAGCCAGAGTGAGAGATGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGCAGGCTAGCTCCCCGTGCCAGCCAGAGTGAGAGATGAACTG  450

seq1  TACTGGGTGGAGCCCAGTTGGCCCGTGCTGAGGTCTGCGTAGCACTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGTGGAGCCCAGTTGGCCCGTGCTGAGGTCTGCGTAGCACTGAAA  500

seq1  TCCACATTGGCTGCTCTGGGGGTGGGGTCAGGTGGGGCTCAGGGTAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTGGCTGCTCTGGGGGTGGGGTCAGGTGGGGCTCAGGGTAGAGC  550

seq1  TTCTCACCTGGAGGGGGAGGTTCTGGGCAGAACTGGGGCTGTTAGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCTGGAGGGGGAGGTTCTGGGCAGAACTGGGGCTGTTAGGAGAT  600

seq1  TAAATGGAACAAGAACCTAACATCCAGGCTGTTGGGGAGTTGATCTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAACAAGAACCTAACATCCAGGCTGTTGGGGAGTTGATCTTCAG  650

seq1  GCATTGAGATGACTATGGGAACCAGAGAACAGGTTTATATAGGTTTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAGATGACTATGGGAACCAGAGAACAGGTTTATATAGGTTTAATG  700

seq1  GCAAGCAAGGCTGACTTGAGGCTATTCTTTGAGAATCCTTAATTTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAGGCTGACTTGAGGCTATTCTTTGAGAATCCTTAATTTATTTT  750

seq1  AATTCAAATTTTAATTA-TTGTTTCATTTAAATGATTTATTAACAAATTA  799
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AATTCAAATTTTAATTATTTGTTTCATTTAAATGATTTATTAACAAATAA  800

seq1  TAATATTATTTTATATTCTTATAATTATATTGTTATAATAAGTAACTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTATTTTATATTCTTATAATTATATTGTTATAATAAGTAACTGAT  850

seq1  TTATTAATAACATAATTTAATTAATTATCATAAATT-AAGGATCCTTTAA  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATTAATAACATAATTTAATTAATTATCATAAATTAAAGGATCCTTTAA  900

seq1  TTCTCCAGGCTATAGAGATACTT-CAGGGGCTACAAGGCACCCAACTAAG  947
      |||  |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCTCAGGCTATAGAGATACTTCCAGGGGCTACAAGGCACCCAACTAAG  950

seq1  ACTAATCACCAAATTCTAGAACTAGGCAGCTGAC-TCTAAGCAGCTTAGA  996
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  ACTAATCACC-AATTCTAGAACTAGGCAGCTGACTTCTAAGCAGCTTAGA  999

seq1  --GTGTCTTCAAGGCGTTTATAATCTACC-TGAGAAGGAACGATCAGAGT  1043
        |||||||||| |||||||| ||||||| ||| ||||||||||||||||
seq2  AGGTGTCTTCAA-GCGTTTAT-ATCTACCTTGAAAAGGAACGATCAGAGT  1047

seq1  AC  1045
      ||
seq2  AC  1049