BAC Information

Click to search

BAC

Clone NameB6Ng01-295I02
Chromosome12 (Build37)
Map Location 60,219,160 - 60,387,281
singlet/doubletdoublet
Overlap geneMgea6, Fbxo33
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2
Downstream geneLOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295I02.bB6Ng01-295I02.g
ACCGA091352GA091353
length1,121897
definitionB6Ng01-295I02.b B6Ng01-295I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,219,160 - 60,220,285)(60,386,694 - 60,387,281)
sequence
gaattcagttacaggtggttgtaagctgtgatgtgggtggtgggagttgc
aactgagtcctctgaaaggtaacaagtgcgcttaaccactgaaccatctt
tccaaccccaggaatgattgattgattgattattttaaaaatgtttattt
ttatttatacgagtgtatggctctgtatgcacttgtatgcaagcttcatg
gtgtatgcgtgacaaccagaagacgaattgccggagctggttctcgtctt
ccgccatgcggatcttggggcttgaactctgcttatcatgtttggcaaca
agcatcttcactcactgagtcatcctgtcagcccaaggaatggaatctta
gtgggacctttttattattcttagtcatgagctcgcagagtaggagaaag
ttgatgttacattaggtccaggctttatttttttaagcctggttctggct
aagacgcccaggctggtgttgaatttgtgactcttttgtctttatttatg
aaatgttgggattacagacttgtggtaccatgcttggcatcatttttaaa
gtaaaaaaatatgtttgcttgcttaaatgagtacaggtttttaatgttgt
tgtttctgttgctgttgttgttgttgctgttgctgttttagtcttccttg
gccaaggtatccagcactatgtggtcatctgagtaaaggtccttccaagc
ctctgtcttaacctccagcctgtaagcatgttatttcacaagcaggaagg
actttagaagctattctttaggtgcactatcacctcacggttaagcgagc
aggacagtgtgagtaagagatgacaggatgtatccgtgctggagaatgga
aagtggttctaccaagtgaggaatgagggaggcttttggaagctacagaa
gaccagcatttgaatcttcctccaagtttccagaaggcacgcagtccagc
aaagatggctttaagattttgacttccaaaagtctacagactgactctat
agcttaggacaaagcctgtggtcatttgtcatactaccttgggactgtac
ggtcacagttaaatgtttttgtgcattttctcagtgaagggtcataccta
gcattgtgtctcgaacaatat
gaattcagatatccttctgactctgctgagagaagccagaggcctcaaac
cagaccaacggttcattgcaataaatatttgcaagtaaaaactattggag
caaactggtatacatacagtgtgatgcactgcgacccatcacagcttcta
tgatgagagagatggttttgttgttgctgctgctgctgctattttgtttt
gttttgttttgttttgttttgttttgttttgttttgttttgcaggggaag
gggattgcaagggtggaaggcagatatgcagggacagggagaagagtggg
attgggattcacgatgtgaaattcacaaaatcaataaaaagtttaaaggg
gggtgtgtgcatggtgggcttacctcgaagtacatttctcaaaagtctga
cagcctgagttcaatccctggaacctatttaaaggtaaaatgagagaact
gacttcacacagtcatcttctgacgcccaacacatgagccatggcacatg
cacgcccgagcacatataaagatgatagcttaaaaatgtttgagtgccgg
gcgtggtgccgcacgcctttaatcccagcacttgggaggcagaggcaggc
agatttctgagttcgaggccagcctggtctacagagtgagttccaggaca
gccaggtctacacagagaaaccctgtctcaaaaaaccaaaaaaacaaaaa
caaaaaaaaaaagttttgtaaactactactcaattttctattttaaacta
gatttacttctgaagttccctcagacagaatcagttctctccccctaact
gaaatgttacccttctattattctttattttctacctttgttaataactg
ggatgtgtacttcaactctaataaaatcgatatatatttgatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60219160_60220285
seq2: B6Ng01-295I02.b_48_1168

seq1  GAATTCAGTTACAGGTGGTTGTAAGCTGTGATGTGGGTGGTGGGAGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTACAGGTGGTTGTAAGCTGTGATGTGGGTGGTGGGAGTTGC  50

seq1  AACTGAGTCCTCTGAAAGGTAACAAGTGCGCTTAACCACTGAACCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTCCTCTGAAAGGTAACAAGTGCGCTTAACCACTGAACCATCTT  100

seq1  TCCAACCCCAGGAATGATTGATTGATTGATTATTTTAAAAATGTTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCCAGGAATGATTGATTGATTGATTATTTTAAAAATGTTTATTT  150

seq1  TTATTTATACGAGTGTATGGCTCTGTATGCACTTGTATGCAAGCTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATACGAGTGTATGGCTCTGTATGCACTTGTATGCAAGCTTCATG  200

seq1  GTGTATGCGTGACAACCAGAAGACGAATTGCCGGAGCTGGTTCTCGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCGTGACAACCAGAAGACGAATTGCCGGAGCTGGTTCTCGTCTT  250

seq1  CCGCCATGCGGATCTTGGGGCTTGAACTCTGCTTATCATGTTTGGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCATGCGGATCTTGGGGCTTGAACTCTGCTTATCATGTTTGGCAACA  300

seq1  AGCATCTTCACTCACTGAGTCATCCTGTCAGCCCAAGGAATGGAATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTCACTCACTGAGTCATCCTGTCAGCCCAAGGAATGGAATCTTA  350

seq1  GTGGGACCTTTTTATTATTCTTAGTCATGAGCTCGCAGAGTAGGAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCTTTTTATTATTCTTAGTCATGAGCTCGCAGAGTAGGAGAAAG  400

seq1  TTGATGTTACATTAGGTCCAGGCTTTATTTTTTTAAGCCTGGTTCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTACATTAGGTCCAGGCTTTATTTTTTTAAGCCTGGTTCTGGCT  450

seq1  AAGACGCCCAGGCTGGTGTTGAATTTGTGACTCTTTTGTCTTTATTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGCCCAGGCTGGTGTTGAATTTGTGACTCTTTTGTCTTTATTTATG  500

seq1  AAATGTTGGGATTACAGACTTGTGGTACCATGCTTGGCATCATTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGGGATTACAGACTTGTGGTACCATGCTTGGCATCATTTTTAAA  550

seq1  GTAAAAAAATATGTTTGCTTGCTTAAATGAGTACAGGTTTTTAATGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAATATGTTTGCTTGCTTAAATGAGTACAGGTTTTTAATGTTGT  600

seq1  TGTTTCTGTTGCTGTTGTTGTTGTTGCTGTTGCTGTTTTAGTCTTCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTTGCTGTTGTTGTTGTTGCTGTTGCTGTTTTAGTCTTCCTTG  650

seq1  GCCAAGGTATCCAGCACTATGTGGTCATCTGAGTAAAGGTCCTTCCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTATCCAGCACTATGTGGTCATCTGAGTAAAGGTCCTTCCAAGC  700

seq1  CTCTGTCTTAACCTCCAGCCTGTAAGCATGTTATTTCACAAGCAGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTAACCTCCAGCCTGTAAGCATGTTATTTCACAAGCAGGAAGG  750

seq1  ACTTTAGAAGCTATTCTTTAGGTGCACTATCACCTCACGGTTAAGCGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGAAGCTATTCTTTAGGTGCACTATCACCTCACGGTTAAGCGAGC  800

seq1  AGGACAGTGTGAGTAAGAGATGACAGGATGTATCCGTGCTGGAGAATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTGTGAGTAAGAGATGACAGGATGTATCCGTGCTGGAGAATGGA  850

seq1  AAGTGGTTCTACCAAGTGAGGAATGAGGGAGGCTTTTGGAAGCTACAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTCTACCAAGTGAGGAATGAGGGAGGCTTTTGGAAGCTACAGAA  900

seq1  GACCAGCATTTGAATCTTCCTCCAAGTTTCCAGAAGGCACGCAGTCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCATTTGAATCTTCCTCCAAGTTTCCAGAAGGCACGCAGTCCAGC  950

seq1  AAAGATGGCTTTAAGATTTTGACTTCCAAAAGTCTAACAGACTGAACTCT  1000
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  AAAGATGGCTTTAAGATTTTGACTTCCAAAAGTCT-ACAGACTG-ACTCT  998

seq1  ATAGCTTAAGACAAAAGCCTGTGGTCATTTGTCATACTACCTTGGGGACT  1050
      |||||||| ||| |||||||||||||||||||||||||||||| ||||| 
seq2  ATAGCTTAGGAC-AAAGCCTGTGGTCATTTGTCATACTACCTT-GGGAC-  1045

seq1  TGTACGGGTCACAGTT-AATG-TTTTGTGCATTTTCTCAAGTGAAGGGTC  1098
      ||||| |||||||||| |||| |||||||||||||||| |||||||||||
seq2  TGTAC-GGTCACAGTTAAATGTTTTTGTGCATTTTCTC-AGTGAAGGGTC  1093

seq1  ATA-CTAGCCATGGTGTCTCAAACAATAT  1126
      ||| |||| ||| ||||||| ||||||||
seq2  ATACCTAG-CATTGTGTCTCGAACAATAT  1121

seq1: chr12_60386694_60387281
seq2: B6Ng01-295I02.g_368_965 (reverse)

seq1  TATATATCAAATATATATCGA-TTTATTAGAGTTGAAGTACACAT-CCAG  48
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  TATATATCAAATATATATCGATTTTATTAGAGTTGAAGTACACATCCCAG  50

seq1  TTATTTAC-AAGGTAGAAAATAAAGAAT-ATAG-AGGGTAACATTTCAGT  95
      ||||| || ||||||||||||||||||| |||| ||||||||||||||||
seq2  TTATTAACAAAGGTAGAAAATAAAGAATAATAGAAGGGTAACATTTCAGT  100

seq1  TA-GGGGAGAG-ACTGATTCTGTCTGA-GGAACTTCAGAAGTAAATCTAG  142
      || |||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TAGGGGGAGAGAACTGATTCTGTCTGAGGGAACTTCAGAAGTAAATCTAG  150

seq1  TTT-AAATAGAAAATTGAGTAGTAGTTTAC-AAACTTTTTTTTTTTGTTT  190
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTAAAATAGAAAATTGAGTAGTAGTTTACAAAACTTTTTTTTTTTGTTT  200

seq1  TTGTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGACCTGGCTGT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGACCTGGCTGT  250

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCC  300

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGGCACCACGCCCG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGGCACCACGCCCG  350

seq1  GCACTCAAACATTTTTAAGCTATCATCTTTATATGTGCTCGGGCGTGCAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAAACATTTTTAAGCTATCATCTTTATATGTGCTCGGGCGTGCAT  400

seq1  GTGCCATGGCTCATGTGTTGGGCGTCAGAAGATGACTGTGTGAAGTCAGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATGGCTCATGTGTTGGGCGTCAGAAGATGACTGTGTGAAGTCAGT  450

seq1  TCTCTCATTTTACCTTTAAATAGGTTCCAGGGATTGAACTCAGGCTGTCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTTTACCTTTAAATAGGTTCCAGGGATTGAACTCAGGCTGTCA  500

seq1  GACTTTTGAGAAATGTACTTCGAGGTAAGCCCACCATGCACACACCCCCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGAGAAATGTACTTCGAGGTAAGCCCACCATGCACACACCCCCC  550

seq1  TTTAAACTTTTTATTGATTTTGTGAATTTCACATCGTGAATCCCAATC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTTTTATTGATTTTGTGAATTTCACATCGTGAATCCCAATC  598