BAC Information

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BAC

Clone NameB6Ng01-296F07
Chromosome14 (Build37)12 (Build37)
Map Location 72,037,021 - 72,038,19877,754,019 - 77,754,833
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132, LOC100043136
Downstream geneLOC668477, LOC668482, LOC675957, Fndc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296F07.bB6Ng01-296F07.g
ACCGA091968GA091969
length1,164993
definitionB6Ng01-296F07.b B6Ng01-296F07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,037,021 - 72,038,198)(77,754,019 - 77,754,833)
sequence
gaattctgtgtgacttaatacaaacctgtaccttgacatatttaatcttg
ggacatgtttatctagactaaattttgtcatcttttcccatatgtatcac
attttagatgatagattttagagaattaccttgaatctttagatttttta
ttgtacggaacactttaaaatgataactggtatttgagtcacttaaggct
aatggggacttgacactaacatttgctttcagaaggtatatgatgtttgg
gggacaattatagctaccttcaaaagggacttgagtatgtgtcagacaat
aaatgttatccagagtcacagtggatgtagtcgactttgcttatatgccc
tgaatgtgaataaatgacactatgggaatttagtcctctattatgggagg
cacaagtgtacatagaactgctttctgtaagctatatataagttgcatga
aaagacacaaccgtcagtaagaggcacatacggcaatataggcaagttat
tcaaaggctcagagggaacttcaggaggtcagaagttagacaatgaaatg
agcatgaaattcataaattgtcatgtgctgtttaagcttattgagaagct
gactctataagcagggttgagtctgccccctcatcaagtcccacccaagc
atatttgtatgcagtattgtctatgatctcctgttctgggccagactgat
ctcctggctttgtaacagagaggaaacaaaaactcagcaagcagcaagtg
tttttaaaaaacaccttgtatttgagatcagctggatggtaaacagtaag
agccatttgtaattgtttggccaacaatacaaaaatgtctctagtgagaa
cagcaagtcagaggttagccatgggaagctttttcatggagagctccagc
tgactgcctcaacttttccctgtcaatttttgatgggtgtttgctaggcc
ccaatgggatgaaatttacctttgtgtgccctccaatcatactggatgct
ctaaagacccagtatgatgatattttgctctgcctactgctctctataag
ctattattcttttgcctctatgaaactcataactcacttattcaggtctg
agaaaaaaaagagaatgttatcatagttcattctctgtcagaataggagt
agggtgaaagctga

gaattcacgcagttgaatccttctcaacagtctgtgttacgggaacactt
cattaccaccgttccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacacttcattaccaccgttccccag
ctgaagagttctgaattcacgcagttgaatccttctcaacagtctgtttt
acgggaacacttcattaccaccgttccccagctgaggagttctgaatcca
cgctggatccttctcaacagtctgttttacgggaacctttattaccatga
cccgcagttctggttccggaatgagggatcttccttgcgccggtgatggt
aaccgtcccaggttttctcgtcccgggtttcagcaccaactcttacccgc
gttctcgcgaccggccaggaaagacgcaacaaaccggaatcttctgcggc
aaaactttattgcttacatcttcaggagcaagagtgcaagagcaagagct
ctattgcttacatctttaggagccagagcgcaagagcgctagagtgcaag
agccagagcaagagcgcaagaaggagaatggcgaaaccccgtccccttta
aggagaattattctccgcctaggacatattactccttgattggctgcagc
ccatcggccgagttgtcgtcacggggaaggcagagcacatggggtggaaa
actacccttggcacatgcgcagattatttgtttaccacttagaacacagg
atgttagcgccatcttgcaacggcgaatgtgagggcggctccccacactt
atccagtgtatactccattgcaggatgtcctagtgccccaataacaatga
caaatggtcaaaggagtccctgctcaaggcttcctgctcctaatgagaaa
agggagggctcagtgggctaggtctaagtcaccaagggccatctccctcc
cactgtctttgccagtcacagcaccccaaacccaccaagtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_72037021_72038198
seq2: B6Ng01-296F07.b_47_1210

seq1  GAATTCTGTGTGACTTAATACAAACCTGTACCTTGACATATTTAATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGACTTAATACAAACCTGTACCTTGACATATTTAATCTTG  50

seq1  GGACATGTTTATCTAGACTAAATTTTGTCATCTTTTCCCATATGTATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTTTATCTAGACTAAATTTTGTCATCTTTTCCCATATGTATCAC  100

seq1  ATTTTAGATGATAGATTTTAGAGAATTACCTTGAATCTTTAGATTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGATGATAGATTTTAGAGAATTACCTTGAATCTTTAGATTTTTTA  150

seq1  TTGTACGGAACACTTTAAAATGATAACTGGTATTTGAGTCACTTAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACGGAACACTTTAAAATGATAACTGGTATTTGAGTCACTTAAGGCT  200

seq1  AATGGGGACTTGACACTAACATTTGCTTTCAGAAGGTATATGATGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGACTTGACACTAACATTTGCTTTCAGAAGGTATATGATGTTTGG  250

seq1  GGGACAATTATAGCTACCTTCAAAAGGGACTTGAGTATGTGTCAGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAATTATAGCTACCTTCAAAAGGGACTTGAGTATGTGTCAGACAAT  300

seq1  AAATGTTATCCAGAGTCACAGTGGATGTAGTCGACTTTGCTTATATGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATCCAGAGTCACAGTGGATGTAGTCGACTTTGCTTATATGCCC  350

seq1  TGAATGTGAATAAATGACACTATGGGAATTTAGTCCTCTATTATGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGAATAAATGACACTATGGGAATTTAGTCCTCTATTATGGGAGG  400

seq1  CACAAGTGTACATAGAACTGCTTTCTGTAAGCTATATATAAGTTGCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGTACATAGAACTGCTTTCTGTAAGCTATATATAAGTTGCATGA  450

seq1  AAAGACACAACCGTCAGTAAGAGGCACATACGGCAATATAGGCAAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACAACCGTCAGTAAGAGGCACATACGGCAATATAGGCAAGTTAT  500

seq1  TCAAAGGCTCAGAGGGAACTTCAGGAGGTCAGAAGTTAGACAATGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCTCAGAGGGAACTTCAGGAGGTCAGAAGTTAGACAATGAAATG  550

seq1  AGCATGAAATTCATAAATTGTCATGTGCTGTTTAAGCTTATTGAGAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAATTCATAAATTGTCATGTGCTGTTTAAGCTTATTGAGAAGCT  600

seq1  GACTCTATAAGCAGGGTTGAGTCTGCCCCCTCATCAAGTCCCACCCAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTATAAGCAGGGTTGAGTCTGCCCCCTCATCAAGTCCCACCCAAGC  650

seq1  ATATTTGTATGCAGTATTGTCTATGATCTCCTGTTCTGGGCCAGACTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTATGCAGTATTGTCTATGATCTCCTGTTCTGGGCCAGACTGAT  700

seq1  CTCCTGGCTTTGTAACAGAGAGGAAACAAAAACTCAGCAAGCAGCAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTTTGTAACAGAGAGGAAACAAAAACTCAGCAAGCAGCAAGTG  750

seq1  TTTTTAAAAAACACCTTGTATTTGAGATCAGCTGGATGGTAAACAGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAACACCTTGTATTTGAGATCAGCTGGATGGTAAACAGTAAG  800

seq1  AGCCATTTGTAATTGTTTGGCCAACAATACAAAAATGTCTCTAGTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTGTAATTGTTTGGCCAACAATACAAAAATGTCTCTAGTGAGAA  850

seq1  CAGCAAGTCAGAGGTTAGCCATGGGAAGCTTTTTCATGGAGAGCTCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTCAGAGGTTAGCCATGGGAAGCTTTTTCATGGAGAGCTCCAGC  900

seq1  TGACTGCCTCAACTTTTCCCTGTCAATTTTTGATGGGTGTTTGCTAGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCCTCAACTTTTCCCTGTCAATTTTTGATGGGTGTTTGCTAGGCC  950

seq1  CCAATGGGATGAAATTTACCTTTGTGTGCCCTCCCAATCATACTGGATGC  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAATGGGATGAAATTTACCTTTGTGTGCCCT-CCAATCATACTGGATGC  999

seq1  TCTAAGGACCCAGTATGATGATATTTTGCTTCCTGCCTACTGCTCTCTAT  1050
      ||||| ||||||||||||||||||||||||  ||||||||||||||||||
seq2  TCTAAAGACCCAGTATGATGATATTTTGCT--CTGCCTACTGCTCTCTAT  1047

seq1  TAGCTATTAATTCTTTTGCCTTCTATGAAACTCATAAACTCACTTATTTA  1100
       ||||||| ||||||||||| |||||||||||||| |||||||||||| |
seq2  AAGCTATT-ATTCTTTTGCC-TCTATGAAACTCAT-AACTCACTTATTCA  1094

seq1  AGTCTGAGAAAAAAAAGAGAATGGTTATCATAGGTCATTCTCTGTCCAGA  1150
       ||||||||||||||||||||| |||||||||| ||||||||||||   |
seq2  GGTCTGAGAAAAAAAAGAGAAT-GTTATCATAGTTCATTCTCTGTC---A  1140

seq1  AAAGAGGAGTGAGGGGGTGAGAAGCTGA  1178
       || ||||||    |||||| |||||||
seq2  GAATAGGAGT---AGGGTGA-AAGCTGA  1164


seq1: chr12_77754019_77754833
seq2: B6Ng01-296F07.g_128_864 (reverse)

seq1  TGTGGGGAGCCGCCCTCACATTCGCCGTTGCAAGATGGCGCTGACATCCT  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGGGGAGCCGCCCTCACATTCGCCGTTGCAAGATGGCGCTAACATCCT  50

seq1  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTT  100

seq1  CCACTACATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCGATGGGCT  150
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCGATGGGCT  150

seq1  GCAGCCAATCAGGGAGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAA  200
      ||||||||||| ||||||||| |||||||||||||||||||||||||| |
seq2  GCAGCCAATCAAGGAGTAATATGTCCTAGGCGGAGAATAATTCTCCTT-A  199

seq1  AAAGGGACGGGGTTTCGCCATTCTCCCTTTTTGCTCTCTTGCTCTTGCTC  250
      || ||||||||||||||||||||| |||| |||| |||||||||| |  |
seq2  AAGGGGACGGGGTTTCGCCATTCT-CCTTCTTGCGCTCTTGCTCTGG--C  246

seq1  TCTTGCTCTCTTGCGCTCTGGCTCCTAAAAATGTAAGCAATAGAGCTCTT  300
      |||||| |||| |||                                   
seq2  TCTTGCACTCTAGCG-----------------------------------  261

seq1  GCTCTCTTGCTCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTGCTC  350
         ||||||| ||||||||||||||||||||||||||||||||||||  |
seq2  ---CTCTTGCGCTCTGGCTCCTAAAGATGTAAGCAATAGAGCTCTTG--C  306

seq1  TCTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAA  356

seq1  GATTCCGGTTTGTTGCGTTCTTCCTGGCCGGTCGCGAGAACGCGTGTAAG  450
      ||||||||||||||||||  |||||||||||||||||||||||| |||||
seq2  GATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGAGAACGCGGGTAAG  406

seq1  AGTTGGTGCCGAAACCCGGGACGAGAAAACCCGGGACGAGAAATCCTGGG  500
      ||||||||| |||||||                              |||
seq2  AGTTGGTGCTGAAACCC------------------------------GGG  426

seq1  ACGAGAAAACCCGGGACGGTTACCATCACCGGCGCAAGGAAGATCCCTCA  550
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAAAACCTGGGACGGTTACCATCACCGGCGCAAGGAAGATCCCTCA  476

seq1  TTCCGGAACAAGAACTGCGGGTCATGGTAATGAAGTGTTCCCGTAAAACA  600
      ||||||||| ||||||||||||||||||||| ||| ||||||||||||||
seq2  TTCCGGAACCAGAACTGCGGGTCATGGTAATAAAG-GTTCCCGTAAAACA  525

seq1  GACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGG  650
      |||||||||||||||| ||   ||||| ||||||||||| ||||||||||
seq2  GACTGTTGAGAAGGATCCA---GCGTGGATTCAGAACTCCTCAGCTGGGG  572

seq1  AACGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCA  622

seq1  ACTGCGTGAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGT  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTGCGTGAATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGT  672

seq1  TCCCGTAACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACT  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACT  722

seq1  CTTCAGCTGGGGAAC  815
      |||||||||||||||
seq2  CTTCAGCTGGGGAAC  737


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