BAC Information

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BAC

Clone NameB6Ng01-297B06
Chromosome12 (Build37)
Map Location 35,192,341 - 35,404,277
singlet/doubletdoublet
Overlap geneHdac9
Upstream geneLOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297B06.bB6Ng01-297B06.g
ACCGA092529GA092530
length1,1511,171
definitionB6Ng01-297B06.b B6Ng01-297B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,192,341 - 35,193,493)(35,403,091 - 35,404,277)
sequence
gaattcctatcatctagtgttttactatattctcttttgaaaacagaaga
tttagatacaaaagtctgcctgtcatcctactgttgttacagtacagaag
aaacacaatgtccaggcttatggtgaagaagcaaaagcctacgtgtgtat
catctacactttctaggtttgtgtgagtctgctctattatgccaatgcaa
ctacaatcacctaaggatgcattcctcaggaggtgtcttctgtgtgacat
gagactatatatatgagaagaagtctattttgattgctatcaaactaaac
cgggtaagctgtaacaactactgaagagttcttcatatacaagtatggct
acaaagcttttaagaaaatgtaatatgttcaaaatccaagttagacaaag
gacaggcttcagaaattcaataactttcagataaactagagttactcagg
ctttagatataaaatctgtattattaaaaatcaagccaggcagtggtggt
gcatgcctttaatcccagcacttaggaggcagagtcaggaggatttctgt
gttccaggccaacctggtctacagagtgagttccaggacaaccagggcta
cacagagaaacctggtttcaaaaaatcaaaaaaaaaaaaaaaagaagaag
aagaaagaaagaaattcaaggaactcatgtacacacatgcatggcattaa
ctgccttttgactcagagttactgtcaatgtacatgaaggtacctagcct
tgcctcctaaacttctgaagctagggagtagttagtaatgcttgccatgt
aatacaaggatctatatatgatcctccaaactacatgtgaaaaagaaact
agccatcacgtaggcctctgattccagcaacagagaagtgagaacaggag
catccatgggctttgtgagccagacagtctagcagtcaggcccaagatca
gtgagaggcacagtaccaaaagtaagaagaaggcaattataggaagacat
agtgtcacctctgtcctcagatacagctggacacacacacacacacacac
acacacacacacacacacacacacacgtgcatgcacaccagacacaatag
gtctaaatgctaacatgtttataggtatcagagacaatggagtagtcatt
g

gaattcccaacttggaaaccatcaaatatctgctttgaaagttaacattg
aagttaacatatagctgaaagatatagtttataaatggaatattcttctg
atcgtgcagtattgaaatgaatatgcttgaaaacatatttaaagacccaa
acaacagtcactgtataacttaagacagtgtagggtaatttcctttcaaa
atcagctgcctgcgtagctgaaatacttgagaaaaaccacaaaaacacgg
tctccgacagttataccatcattccatgcaattatctctgttttaaatcc
ccttttctaagtgtatatacatttcaaaattgaaaagaaataatagtcat
gataaaatttgaagtgtctattgattgtgtatttcaaatatccctgtttt
gtgtgaatttcaaagaagtgggcttttttatgatgtaaagtttggtactt
ttgatgatcattttttgccaaatttctaattaaaattccaattttggaga
aatgttcttaatggaaataaagtcgttgtagaatctgtagagcgaaggat
aagactggtttatatgaggggctttattcagtaatttttaagtttagagg
aaattaataaatcaatttaattgaatttaaatatgactcagcttttgata
ttaaattagtaaaaaggaaaaactatttaaaatttcaaagcatcttcatt
gtgaaaacaaacatcatcatcataattattattgctaccattacaattag
ctggtatggaattttattgttttcagttcttttaatgctcctgttttaaa
gtcaacactcagttattcaagtgttgtttttataattgcttacactgaga
tacttcatgagtaggccttgcttgtctgatatagtagatagaattatggg
acataagatatagatgctgttccttggatgcaacccttttcttattgggc
caggagctcctctcatctttcactcgtatttgaaacagagcagagatgaa
tgttagaataagaatatgtttgtccattatactgtcgtcctttctaatgt
gttccagcaaattatttatttaattcattttactgtaatccagtgtcaca
gtgccctcttctgtctgcctctccattccttatcaatctcctcccatgtt
ctccaaaaggatgtcttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35192341_35193493
seq2: B6Ng01-297B06.b_45_1195

seq1  GAATTCCTATCATCTAGTGTTTTACTATATTCTCTTTTGAAAACAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCATCTAGTGTTTTACTATATTCTCTTTTGAAAACAGAAGA  50

seq1  TTTAGATACAAAAGTCTGCCTGTCATCCTACTGTTGTTACAGTACAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATACAAAAGTCTGCCTGTCATCCTACTGTTGTTACAGTACAGAAG  100

seq1  AAACACAATGTCCAGGCTTATGGTGAAGAAGCAAAAGCCTACGTGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATGTCCAGGCTTATGGTGAAGAAGCAAAAGCCTACGTGTGTAT  150

seq1  CATCTACACTTTCTAGGTTTGTGTGAGTCTGCTCTATTATGCCAATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACTTTCTAGGTTTGTGTGAGTCTGCTCTATTATGCCAATGCAA  200

seq1  CTACAATCACCTAAGGATGCATTCCTCAGGAGGTGTCTTCTGTGTGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATCACCTAAGGATGCATTCCTCAGGAGGTGTCTTCTGTGTGACAT  250

seq1  GAGACTATATATATGAGAAGAAGTCTATTTTGATTGCTATCAAACTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATATATATGAGAAGAAGTCTATTTTGATTGCTATCAAACTAAAC  300

seq1  CGGGTAAGCTGTAACAACTACTGAAGAGTTCTTCATATACAAGTATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAAGCTGTAACAACTACTGAAGAGTTCTTCATATACAAGTATGGCT  350

seq1  ACAAAGCTTTTAAGAAAATGTAATATGTTCAAAATCCAAGTTAGACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTTTTAAGAAAATGTAATATGTTCAAAATCCAAGTTAGACAAAG  400

seq1  GACAGGCTTCAGAAATTCAATAACTTTCAGATAAACTAGAGTTACTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCTTCAGAAATTCAATAACTTTCAGATAAACTAGAGTTACTCAGG  450

seq1  CTTTAGATATAAAATCTGTATTATTAAAAATCAAGCCAGGCAGTGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGATATAAAATCTGTATTATTAAAAATCAAGCCAGGCAGTGGTGGT  500

seq1  GCATGCCTTTAATCCCAGCACTTAGGAGGCAGAGTCAGGAGGATTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTTAATCCCAGCACTTAGGAGGCAGAGTCAGGAGGATTTCTGT  550

seq1  GTTCCAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGACAACCAGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGACAACCAGGGCTA  600

seq1  CACAGAGAAACCTGGTTTCAAAAAATCAAAAAAAAAAAAAAAAGAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAACCTGGTTTCAAAAAATCAAAAAAAAAAAAAAAAGAAGAAG  650

seq1  AAGAAAGAAAGAAATTCAAGGAACTCATGTACACACATGCATGGCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAATTCAAGGAACTCATGTACACACATGCATGGCATTAA  700

seq1  CTGCCTTTTGACTCAGAGTTACTGTCAATGTACATGAAGGTACCTAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTGACTCAGAGTTACTGTCAATGTACATGAAGGTACCTAGCCT  750

seq1  TGCCTCCTAAACTTCTGAAGCTAGGGAGTAGTTAGTAATGCTTGCCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTAAACTTCTGAAGCTAGGGAGTAGTTAGTAATGCTTGCCATGT  800

seq1  AATACAAGGATCTATATATGATCCTCCAAACTACATGTGAAAAAGAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGATCTATATATGATCCTCCAAACTACATGTGAAAAAGAAACT  850

seq1  AGCCATCACGTAGGCCTCTGATTCCAGCAACAGAGAAGTGAGAACAGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCACGTAGGCCTCTGATTCCAGCAACAGAGAAGTGAGAACAGGAG  900

seq1  CATCCATGGGCTTTGTGAGCCAGACAGTCTAGCAGTCAGGGCCAAGATCA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATCCATGGGCTTTGTGAGCCAGACAGTCTAGCAGTCAGGCCCAAGATCA  950

seq1  GTGAGAGGCACAGTACCAAAAGTAAGAAGAAGGGCAATTATA-GAAGACA  999
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  GTGAGAGGCACAGTACCAAAAGTAAGAAGAA-GGCAATTATAGGAAGACA  999

seq1  TAGTGTCAACCTCTGTCCTCCAGATACAGCTGGACACACACACACACACA  1049
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGTGTC-ACCTCTGTCCT-CAGATACAGCTGGACACACACACACACACA  1047

seq1  CACACACACACACACACACACACACACACGTGCCATGCACA-CAGACAC-  1097
      |||||||||||||||||||||||||||||||| |||||||| ||||||| 
seq2  CACACACACACACACACACACACACACACGTG-CATGCACACCAGACACA  1096

seq1  ATA-GTCTAAATTGCTAACATGTTTATAGGTATCAGAGACCAAATGAGTA  1146
      ||| ||||||| ||||||||||||||||||||||||||| |||  |||||
seq2  ATAGGTCTAAA-TGCTAACATGTTTATAGGTATCAGAGA-CAATGGAGTA  1144

seq1  GTCATTG  1153
      |||||||
seq2  GTCATTG  1151


seq1: chr12_35403091_35404277
seq2: B6Ng01-297B06.g_66_1236 (reverse)

seq1  CAGGGAGACATCCTTTTGGAG-ACATGGGGAGGAGGAATGGGATAAGGGA  49
      |||| |||||||||||||||| |||| ||||||||  ||  ||||||| |
seq2  CAGGAAGACATCCTTTTGGAGAACAT-GGGAGGAG--AT-TGATAAGGAA  46

seq1  TTGAGGGAGGGCAGGACAGGAGGAGGGCAACTGTGAAAAAATAAAAATAA  99
      | |||    |||| |||| || |||||| ||||||| |        || |
seq2  TGGAG---AGGCA-GACA-GAAGAGGGC-ACTGTGACA----CTGGATTA  86

seq1  CAAAGGTAAAATGAA-TAAATAAATAATTTGCTTGAACACATTTAGAAAG  148
      ||   |||||||||| ||||||||||||||||| ||||||| ||||||||
seq2  CA---GTAAAATGAATTAAATAAATAATTTGCTGGAACACA-TTAGAAAG  132

seq1  GACGACAGTAATAATGGACAAACAATATTCTTA-TCTAACATTCATCTCT  197
      ||||||||| ||||||||||||| ||||||||| ||||||||||||||||
seq2  GACGACAGT-ATAATGGACAAAC-ATATTCTTATTCTAACATTCATCTCT  180

seq1  GCTCTGTTTCAAATACGAGTGAAAGATGAGAGGAGCTCCTGG-CCAATAA  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTCTGTTTCAAATACGAGTGAAAGATGAGAGGAGCTCCTGGCCCAATAA  230

seq1  GAAAAGGGTTGCATCCAAGGAACAGCATCTATATCTTATGTCCCATAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGTTGCATCCAAGGAACAGCATCTATATCTTATGTCCCATAATT  280

seq1  CTATCTACTATATCAGACAAGCAAGGCCTACTCATGAAGTATCTCAGTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTACTATATCAGACAAGCAAGGCCTACTCATGAAGTATCTCAGTGT  330

seq1  AAGCAATTATAAAAACAACACTTGAATAACTGAGTGTTGACTTTAAAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTATAAAAACAACACTTGAATAACTGAGTGTTGACTTTAAAACA  380

seq1  GGAGCATTAAAAGAACTGAAAACAATAAAATTCCATACCAGCTAATTGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTAAAAGAACTGAAAACAATAAAATTCCATACCAGCTAATTGTA  430

seq1  ATGGTAGCAATAATAATTATGATGATGATGTTTGTTTTCACAATGAAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCAATAATAATTATGATGATGATGTTTGTTTTCACAATGAAGAT  480

seq1  GCTTTGAAATTTTAAATAGTTTTTCCTTTTTACTAATTTAATATCAAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAATTTTAAATAGTTTTTCCTTTTTACTAATTTAATATCAAAAG  530

seq1  CTGAGTCATATTTAAATTCAATTAAATTGATTTATTAATTTCCTCTAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATATTTAAATTCAATTAAATTGATTTATTAATTTCCTCTAAAC  580

seq1  TTAAAAATTACTGAATAAAGCCCCTCATATAAACCAGTCTTATCCTTCGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTACTGAATAAAGCCCCTCATATAAACCAGTCTTATCCTTCGC  630

seq1  TCTACAGATTCTACAACGACTTTATTTCCATTAAGAACATTTCTCCAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGATTCTACAACGACTTTATTTCCATTAAGAACATTTCTCCAAAA  680

seq1  TTGGAATTTTAATTAGAAATTTGGCAAAAAATGATCATCAAAAGTACCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTTTAATTAGAAATTTGGCAAAAAATGATCATCAAAAGTACCAA  730

seq1  ACTTTACATCATAAAAAAGCCCACTTCTTTGAAATTCACACAAAACAGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATCATAAAAAAGCCCACTTCTTTGAAATTCACACAAAACAGGG  780

seq1  ATATTTGAAATACACAATCAATAGACACTTCAAATTTTATCATGACTATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAATACACAATCAATAGACACTTCAAATTTTATCATGACTATT  830

seq1  ATTTCTTTTCAATTTTGAAATGTATATACACTTAGAAAAGGGGATTTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTCAATTTTGAAATGTATATACACTTAGAAAAGGGGATTTAAA  880

seq1  ACAGAGATAATTGCATGGAATGATGGTATAACTGTCGGAGACCGTGTTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATAATTGCATGGAATGATGGTATAACTGTCGGAGACCGTGTTTT  930

seq1  TGTGGTTTTTCTCAAGTATTTCAGCTACGCAGGCAGCTGATTTTGAAAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTTTCTCAAGTATTTCAGCTACGCAGGCAGCTGATTTTGAAAGG  980

seq1  AAATTACCCTACACTGTCTTAAGTTATACAGTGACTGTTGTTTGGGTCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCCTACACTGTCTTAAGTTATACAGTGACTGTTGTTTGGGTCTT  1030

seq1  TAAATATGTTTTCAAGCATATTCATTTCAATACTGCACGATCAGAAGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTTTTCAAGCATATTCATTTCAATACTGCACGATCAGAAGAAT  1080

seq1  ATTCCATTTATAAACTATATCTTTCAGCTATATGTTAACTTCAATGTTAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTATAAACTATATCTTTCAGCTATATGTTAACTTCAATGTTAA  1130

seq1  CTTTCAAAGCAGATATTTGATGGTTTCCAAGTTGGGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAGCAGATATTTGATGGTTTCCAAGTTGGGAATTC  1171


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