BAC Information

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BAC

Clone NameB6Ng01-297B12
Chromosome12 (Build37)
Map Location 103,938,237 - 103,939,126
singlet/doubletsinglet
Overlap geneItpk1
Upstream geneMtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga
Downstream geneMoap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297B12.bB6Ng01-297B12.g
ACCGA092541GA092542
length1,111891
definitionB6Ng01-297B12.b B6Ng01-297B12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcttcattcagatacccagttagacaggactgtttgttgaaga
tgcattctttttcccattgtatggttttgacttcattgtcaaaaatcaac
tgtagatgtgtgtgggtttatttctgggtctttgattctattccattggt
taacctgtctgtttatatgccaataccatgcagtttttattaccattgta
atgtagtatagcttgaaatctgagatggtgatgcttgcagaagtttttta
tatataggattgtcttggctatcctaggttttttgttttgttttgttttg
ttttaatgtaaaggtgagaatggacatgtaaaggtgagaattgctatttc
aaggtctgtaaagaattgtgttgaaagtttgatgggaatagcattgactt
tgtagattgcttttggtagggtagccacttttaatcctactgatacaaga
acatgagagatctttccatcttctgatatcttcctcaattttttttttct
tcagagacttgaagttcttgtcttaaaggtctttcacttgcttggctaga
attgcgccaagatattttatatgatttgtgggtgttgtaaaaggtgttgc
ttctctaatttctttcttggcccatttagtatttgtataaaggagggcta
ccagggtgtttgtttgtttatagtcaagtttgtacgcagagttctctggt
agaacttctggggagtcacttatgtgttcatatcatctatgaatagtgat
attttgacttcttcctttccaatttgtatcctctttatctcctttagttg
tcttattgctctatgtaagacttcaaatactatattgaatgtatagggag
agtggacagccttgccttgtccctgatttagtggaattcttttagtttct
ctccacttaatttgatgttggtcattggcttttctgtatattgctttaat
tgtgttgggtataccaccttacatctctgatcttcttcaagactttaata
tgaagggtatggattttgtccaggctttttaagcatctatgagaatctca
gttttgatttgtcttttttcttccagctgtgcattgggggatcaggtgaa
gggtttcgcta
gaattcttcagaatgacctaaccaaaaaaacaaaaacaaaacacgagact
acctccttgcattcataattccttcagattctccagctagggggctccag
cagcccatcaaagacaagggttgtaagagccagatgtaggtggtaaagta
caacagccaccaggcagggtgggctgacctgaggttcagttccactagcc
ccacctcttagcaagagagtcagttagcaatgatcacagaccgtacccgc
aaaaacttagtccaaggtcactaaatctacaaagccaaatgggcatcaca
tggatggtcagttgtgaacccagccttggaaacctaggcagtttttaacc
aaagacatctatctacccccacagcaggtctagtctgtacccaagagctg
gagaaagagatttatttgcaaggctgggttacatttttcatgggctgctg
taaattgaacctgactcaggatgcctctctctatcacagctctgaggtca
tagcaaagccagctactaaaatacacagaaaaatgccgggctacagacca
gcaccattcaatcctggtaacgagcctcttctctccccctgcagaatcgc
ctagaattgcagcccagaatacgaagctatttcagcagaaagcagcctcc
agatggctttgttttaaaggataaaatagggtcgggggtgtagcttagcg
gcacttgcctatcacgcacaggtttgattctctagcgtaaacacaaacga
agaagactgccgggtgcgcttgggaatacctagaaacccaacacgaggga
agaggccagggcagaaggaacaaaagttcaaggctagcctaggctacata
gtgagactctgtctcaaatcatgggggtgggggtgaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103938237_103939126
seq2: B6Ng01-297B12.g_68_958

seq1  GAATTCTTCAGAATGACCTAACCAAAAAAACAAAAACAAAACACGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAATGACCTAACCAAAAAAACAAAAACAAAACACGAGACT  50

seq1  ACCTCCTTGCATTCATAATTCCTTCAGATTCTCCAGCTAGGGGGCTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTGCATTCATAATTCCTTCAGATTCTCCAGCTAGGGGGCTCCAG  100

seq1  CAGCCCATCAAAGACAAGGGTTGTAAGAGCCAGATGTAGGTGGTAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATCAAAGACAAGGGTTGTAAGAGCCAGATGTAGGTGGTAAAGTA  150

seq1  CAACAGCCACCAGGCAGGGTGGGCTGACCTGAGGTTCAGTTCCACTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCACCAGGCAGGGTGGGCTGACCTGAGGTTCAGTTCCACTAGCC  200

seq1  CCACCTCTTAGCAAGAGAGTCAGTTAGCAATGATCACAGACCGTACCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTTAGCAAGAGAGTCAGTTAGCAATGATCACAGACCGTACCCGC  250

seq1  AAAAACTTAGTCCAAGGTCACTAAATCTACAAAGCCAAATGGGCATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTAGTCCAAGGTCACTAAATCTACAAAGCCAAATGGGCATCACA  300

seq1  TGGATGGTCAGTTGTGAACCCAGCCTTGGAAACCTAGGCAGTTTTTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTCAGTTGTGAACCCAGCCTTGGAAACCTAGGCAGTTTTTAACC  350

seq1  AAAGACATCTATCTACCCCCACAGCAGGTCTAGTCTGTACCCAAGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATCTATCTACCCCCACAGCAGGTCTAGTCTGTACCCAAGAGCTG  400

seq1  GAGAAAGAGATTTATTTGCAAGGCTGGGTTACATTTTTCATGGGCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGATTTATTTGCAAGGCTGGGTTACATTTTTCATGGGCTGCTG  450

seq1  TAAATTGAACCTGACTCAGGATGCCTCTCTCTATCACAGCTCTGAGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAACCTGACTCAGGATGCCTCTCTCTATCACAGCTCTGAGGTCA  500

seq1  TAGCAAAGCCAGCTACTAAAATACACAGAAAAATGCCGGGCTACAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGCCAGCTACTAAAATACACAGAAAAATGCCGGGCTACAGACCA  550

seq1  GCACCATTCAATCCTGGTAACGAGCCTCTTCTCTCCCCCTGCAGAATCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTCAATCCTGGTAACGAGCCTCTTCTCTCCCCCTGCAGAATCGC  600

seq1  CTAGAATTGCAGCCCAGAATACGAAGCTATTTCAGCAGAAAGCAGCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTGCAGCCCAGAATACGAAGCTATTTCAGCAGAAAGCAGCCTCC  650

seq1  AGATGGCTTTGTTTTAAAGGATAAAATAGGGTCGGGGGTGTAGCTTAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTTTGTTTTAAAGGATAAAATAGGGTCGGGGGTGTAGCTTAGCG  700

seq1  GCACTTGCCTATCACGCACAGGTTTGATTCTCTAGCGTAAACACAAACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCCTATCACGCACAGGTTTGATTCTCTAGCGTAAACACAAACGA  750

seq1  AGAAGACTGCCGGGTGCGCTTGGGAATACCTAGAAACCCAACACGAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTGCCGGGTGCGCTTGGGAATACCTAGAAACCCAACACGAGGGA  800

seq1  AGAGGCCAGGGCAGAAGGAACAAAAGTTCAAGGCTAGCCTAGGCTACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGGGCAGAAGGAACAAAAGTTCAAGGCTAGCCTAGGCTACATA  850

seq1  GTGAGACTCTGTCTCAAATCATGGGGGT-GGGGTGAGGTGG  890
      |||||||||||||||||||||||||||| ||||||||||||
seq2  GTGAGACTCTGTCTCAAATCATGGGGGTGGGGGTGAGGTGG  891