BAC Information

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BAC

Clone NameB6Ng01-297F05
Chromosome12 (Build37)
Map Location 98,614,661 - 98,719,467
singlet/doubletdoublet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297F05.bB6Ng01-297F05.g
ACCGA092710GA092711
length1,1961,200
definitionB6Ng01-297F05.b B6Ng01-297F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,718,258 - 98,719,467)(98,614,661 - 98,615,859)
sequence
gaattctatgtagaatttatcaccacctaacatggagcatggatcacaga
ggcttcaattcagtgagacctgagcttgctaaatcctcttctactcatta
gtacagttaccccaggaatgagatctccttgcatgtctgaatattgggag
aaaaagaaaactttcccctctacacagcaagtgtcgatgatctggtcctc
ctatctaggacttgcagactccctaaagcgccactatgatcaagagacag
ctattactatgctgacccttttgtaatgtccaatagaaagtaggatgtta
tccacaacccaaggctcctgggttttgaacagagacaaatggtctacttg
gttttggtgactgtctctgctacggcctctctttggatctattttctggg
atcacctttccaacatttaatagctactttttgagtttaagctaaccaga
gttatcttctagtccagcagttgacagtaatgattgatatgtatgtttat
aaaaatgaatatggtaatatttatccctttctttaaaaaaaaaaacctaa
aatatagtgcagaagtacatcaataggcagatctttaattatctttagtt
attttattactaggctctcattcaaaattactaatcttgattctcttatt
acttctctctgaacatcaagataaaatttggatagtctagagataaattg
tatattttgttgtgtaattttagtagttttagccagtggccacgtttggt
ttgagcaaactcttcctgggaaagatgttgagctgaatttgcccccagcc
ttccttttttaaaattttttaattttaattttttattagatattttctct
atttacatttcaaatgctatcccctttcctagtttcccctccaaaaatcc
ctccccccttcctcctcctcctgcttccaacccacccactcccattcctg
gtcctggcattcccctatactggggcatagagccttcacaggaccagggc
cctcttcccattaatgaccgtctaggccatctctgctacaaatgtagtag
agctacagttccaccatgttgttttctttgattgatggtataggtcagaa
ctctagggtgcctggtagtcaattgatgtcttctttcagtctcagtccct
cagctccttggatattttctctgtccttcattgggggcaccttgtg

gaattccccgactggaccctgacatttctttctaaacctctcttttctca
gaattttgaatgtaagctacacagatgccctccccgcaagatagctggag
caagggctgagttcagtcccaggggctggctccaagaaaggtctaaccct
cgggtgctcgtgcaggtgttttgttaggtgtgtcttcagatagatgtgac
agtttttctctcactgagggagcatctggccatctgtcgaagacacgatg
tgacggaaattagtgttggcctcattttaaatcttccttcatctcaattt
gcagggaaggcattccaatgagtagagagactctctgagtgtgaaacaca
ggatgaaggcatgcatatatgaggataaaaggtaatttgataatagactt
gctttctagtttgtattttaattaatgtgttctatagcatgcagtcaatt
tgatagataatacaatctacacataaaaccatacattagccaatagaggg
acaatacagaaattgagaaaaatatagggaaaattcacttattgactgtt
tttaactaacctatctattattaccacattttaaaagtaattctcttttt
ttgagattatattataaccatgccataccttttcctttacctccccctga
actctttcatgaacctcctggctcttttcatattcatggtcactttttta
agtgatcaaattaaaatatacttctcagccccatcaaggaggttgctctt
tgcaacaggcagagactgtcacagaaaaccacaacccatcaaaatgcagt
tgtggagcccagtcccaattgatacatgtgcaacacaattcctgttcttc
tgatctttcaatctttctcctctctgcccccccccttatgcaaagattct
ccttttcctacatcatttagatgtgctgtaattaatttttggtgtttatt
ttattttatttaagacagattctcattatgtgaggcttacggaatctacc
atgtagatcagactgagcttgaattcatggaatagctacctggtttgttc
cacctgcaagaactggaattaaagaatctgtgccacacactagcctgtac
ttgcaatttacaagtaatagtaatactttccatgtcaatgagcatacagg
cttccactcagtgtttggatcatatgggtctccagagtaaaaagatcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_98718258_98719467
seq2: B6Ng01-297F05.b_46_1241 (reverse)

seq1  CACAAGGT--CCCCAATGAAGGAGCCAGAG-AAATACCCAGGGAGCTGAA  47
      ||||||||  |||||||||||||  ||||| ||||| ||| |||||||  
seq2  CACAAGGTGCCCCCAATGAAGGA--CAGAGAAAATATCCAAGGAGCTG--  46

seq1  AGGGACTGAAGACTGAAAGAAGGAACATCAATATGAACTAACCAGCACCC  97
      |||||||| |||||||||||||  |||||||| || ||| |||||   ||
seq2  AGGGACTG-AGACTGAAAGAAG--ACATCAAT-TG-ACT-ACCAGGCACC  90

seq1  CTAGAGTTCCTTGGAACTATACCATCAATCAAAGAAAAC-ACATGGTGGA  146
      |||||||||    || ||||||||||||||||||||||| ||||||||||
seq2  CTAGAGTTC---TGACCTATACCATCAATCAAAGAAAACAACATGGTGGA  137

seq1  ACTTGTAGCTCTAACTACATTTGTAGCAGAGGATGGCCTAGACGGTCATT  196
      || ||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  AC-TGTAGCTCT-ACTACATTTGTAGCAGA-GATGGCCTAGACGGTCATT  184

seq1  AATGGGAAGAGGGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCAGTATAG  246
      |||||||||||||  || ||||||||||||||||||||||||||||||||
seq2  AATGGGAAGAGGG--CCCTGGTCCTGTGAAGGCTCTATGCCCCAGTATAG  232

seq1  GGGAATGCCAGGACCAGGAATGGGAGTGGGTGGGTTGGAAGCAGGAGGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCCAGGACCAGGAATGGGAGTGGGTGGGTTGGAAGCAGGAGGAG  282

seq1  GAGGAAGGGGGGAGGGATTTTTGGAGGGGAAACTAGGAAAGGGGATAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGGGGAGGGATTTTTGGAGGGGAAACTAGGAAAGGGGATAGCA  332

seq1  TTTGAAATGTAAATAGAGAAAATATCTAATAAAAAATTAAAATTAAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGTAAATAGAGAAAATATCTAATAAAAAATTAAAATTAAAAAA  382

seq1  TTTTAAAAAAGGAAGGCTGGGGGCAAATTCAGCTCAACATCTTTCCCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAGGAAGGCTGGGGGCAAATTCAGCTCAACATCTTTCCCAGG  432

seq1  AAGAGTTTGCTCAAACCAAACGTGGCCACTGGCTAAAACTACTAAAATTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTGCTCAAACCAAACGTGGCCACTGGCTAAAACTACTAAAATTA  482

seq1  CACAACAAAATATACAATTTATCTCTAGACTATCCAAATTTTATCTTGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAATATACAATTTATCTCTAGACTATCCAAATTTTATCTTGAT  532

seq1  GTTCAGAGAGAAGTAATAAGAGAATCAAGATTAGTAATTTTGAATGAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGAGAAGTAATAAGAGAATCAAGATTAGTAATTTTGAATGAGAG  582

seq1  CCTAGTAATAAAATAACTAAAGATAATTAAAGATCTGCCTATTGATGTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAATAAAATAACTAAAGATAATTAAAGATCTGCCTATTGATGTAC  632

seq1  TTCTGCACTATATTTTAGGTTTTTTTTTTTAAAGAAAGGGATAAATATTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACTATATTTTAGGTTTTTTTTTTTAAAGAAAGGGATAAATATTA  682

seq1  CCATATTCATTTTTATAAACATACATATCAATCATTACTGTCAACTGCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCATTTTTATAAACATACATATCAATCATTACTGTCAACTGCTG  732

seq1  GACTAGAAGATAACTCTGGTTAGCTTAAACTCAAAAAGTAGCTATTAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAGATAACTCTGGTTAGCTTAAACTCAAAAAGTAGCTATTAAAT  782

seq1  GTTGGAAAGGTGATCCCAGAAAATAGATCCAAAGAGAGGCCGTAGCAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAAGGTGATCCCAGAAAATAGATCCAAAGAGAGGCCGTAGCAGAG  832

seq1  ACAGTCACCAAAACCAAGTAGACCATTTGTCTCTGTTCAAAACCCAGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACCAAAACCAAGTAGACCATTTGTCTCTGTTCAAAACCCAGGAG  882

seq1  CCTTGGGTTGTGGATAACATCCTACTTTCTATTGGACATTACAAAAGGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTTGTGGATAACATCCTACTTTCTATTGGACATTACAAAAGGGT  932

seq1  CAGCATAGTAATAGCTGTCTCTTGATCATAGTGGCGCTTTAGGGAGTCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGTAATAGCTGTCTCTTGATCATAGTGGCGCTTTAGGGAGTCTG  982

seq1  CAAGTCCTAGATAGGAGGACCAGATCATCGACACTTGCTGTGTAGAGGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTAGATAGGAGGACCAGATCATCGACACTTGCTGTGTAGAGGGG  1032

seq1  AAAGTTTTCTTTTTCTCCCAATATTCAGACATGCAAGGAGATCTCATTCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCTTTTTCTCCCAATATTCAGACATGCAAGGAGATCTCATTCC  1082

seq1  TGGGGTAACTGTACTAATGAGTAGAAGAGGATTTAGCAAGCTCAGGTCTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAACTGTACTAATGAGTAGAAGAGGATTTAGCAAGCTCAGGTCTC  1132

seq1  ACTGAATTGAAGCCTCTGTGATCCATGCTCCATGTTAGGTGGTGATAAAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTGAAGCCTCTGTGATCCATGCTCCATGTTAGGTGGTGATAAAT  1182

seq1  TCTACATAGAATTC  1210
      ||||||||||||||
seq2  TCTACATAGAATTC  1196


seq1: chr12_98614661_98615859
seq2: B6Ng01-297F05.g_66_1265

seq1  GAATTCCCCGACTGGACCCTGACATTTCTTTCTAAACCTCTCTTTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGACTGGACCCTGACATTTCTTTCTAAACCTCTCTTTTCTCA  50

seq1  GAATTTTGAATGTAAGCTACACAGATGCCCTCCCCGCAAGATAGCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGAATGTAAGCTACACAGATGCCCTCCCCGCAAGATAGCTGGAG  100

seq1  CAAGGGCTGAGTTCAGTCCCAGGGGCTGGCTCCAAGAAAGGTCTAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTGAGTTCAGTCCCAGGGGCTGGCTCCAAGAAAGGTCTAACCCT  150

seq1  CGGGTGCTCGTGCAGGTGTTTTGTTAGGTGTGTCTTCAGATAGATGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCTCGTGCAGGTGTTTTGTTAGGTGTGTCTTCAGATAGATGTGAC  200

seq1  AGTTTTTCTCTCACTGAGGGAGCATCTGGCCATCTGTCGAAGACACGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCTCTCACTGAGGGAGCATCTGGCCATCTGTCGAAGACACGATG  250

seq1  TGACGGAAATTAGTGTTGGCCTCATTTTAAATCTTCCTTCATCTCAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGAAATTAGTGTTGGCCTCATTTTAAATCTTCCTTCATCTCAATTT  300

seq1  GCAGGGAAGGCATTCCAATGAGTAGAGAGACTCTCTGAGTGTGAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAGGCATTCCAATGAGTAGAGAGACTCTCTGAGTGTGAAACACA  350

seq1  GGATGAAGGCATGCATATATGAGGATAAAAGGTAATTTGATAATAGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGGCATGCATATATGAGGATAAAAGGTAATTTGATAATAGACTT  400

seq1  GCTTTCTAGTTTGTATTTTAATTAATGTGTTCTATAGCATGCAGTCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTAGTTTGTATTTTAATTAATGTGTTCTATAGCATGCAGTCAATT  450

seq1  TGATAGATAATACAATCTACACATAAAACCATACATTAGCCAATAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATAATACAATCTACACATAAAACCATACATTAGCCAATAGAGGG  500

seq1  ACAATACAGAAATTGAGAAAAATATAGGGAAAATTCACTTATTGACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAGAAATTGAGAAAAATATAGGGAAAATTCACTTATTGACTGTT  550

seq1  TTTAACTAACCTATCTATTATTACCACATTTTAAAAGTAATTCTCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTAACCTATCTATTATTACCACATTTTAAAAGTAATTCTCTTTTT  600

seq1  TTGAGATTATATTATAACCATGCCATACCTTTTCCTTTACCTCCCCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTATATTATAACCATGCCATACCTTTTCCTTTACCTCCCCCTGA  650

seq1  ACTCTTTCATGAACCTCCTGGCTCTTTTCATATTCATGGTCACTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCATGAACCTCCTGGCTCTTTTCATATTCATGGTCACTTTTTTA  700

seq1  AGTGATCAAATTAAAATATACTTCTCAGCCCCATCAAGGAGGTTGCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAAATTAAAATATACTTCTCAGCCCCATCAAGGAGGTTGCTCTT  750

seq1  TGCAACAGGCAGAGACTGTCACAGAAAACCACAACCCATCAAAATGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGGCAGAGACTGTCACAGAAAACCACAACCCATCAAAATGCAGT  800

seq1  TGTGGAGCCCAGTCCCAATTGATACATGTGCAACACAATTCCTGTTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCCCAGTCCCAATTGATACATGTGCAACACAATTCCTGTTCTTC  850

seq1  TGATCTTTCAATCTTTCTCCTCTCTGCCCCCCCCCTTATGCAAAGATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCAATCTTTCTCCTCTCTGCCCCCCCCCTTATGCAAAGATTCT  900

seq1  CCTTTTCCTACATCATTTAGATGTGCTGTAATTAATTTTTGGTGTTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTACATCATTTAGATGTGCTGTAATTAATTTTTGGTGTTTATT  950

seq1  T--ATTTATTTAAGACAGATTCTCATTATGTGAGGCTTACGGAATCTACC  998
      |   |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTATTTTATTTAAGACAGATTCTCATTATGTGAGGCTTACGGAATCTA-C  999

seq1  CATGTAGATCAGACTGAGCTTGAATTCATGG-ATAGCTACCTGGTTTTGT  1047
      ||||||||||||||||||||||||||||||| |||||||||||||||  |
seq2  CATGTAGATCAGACTGAGCTTGAATTCATGGAATAGCTACCTGGTTTGTT  1049

seq1  CCACCTGCAAGAACTGGAATTAAAG-ATCTGTGCCACAACACTTAGCCTT  1096
      ||||||||||||||||||||||||| ||||||||||| |||| ||||| |
seq2  CCACCTGCAAGAACTGGAATTAAAGAATCTGTGCCAC-ACAC-TAGCC-T  1096

seq1  GTAC-TGCAATTTACAAGTAATAGTAAAATTAATTTCCATGTTTAAATAT  1145
      |||| ||||||||||||||||||||||   || |||||||||      ||
seq2  GTACTTGCAATTTACAAGTAATAGTAA---TACTTTCCATGT----CAAT  1139

seq1  GAGCCAATACAGTCTTC--ATCA-TGTTTTGATCATATGGTTCTC---AG  1189
      ||||  |||||| ||||   ||| ||||| |||||||||| ||||   ||
seq2  GAGC--ATACAGGCTTCCACTCAGTGTTTGGATCATATGGGTCTCCAGAG  1187

seq1  TAAA---ATCGGT  1199
      ||||   ||||||
seq2  TAAAAAGATCGGT  1200


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