BAC Information

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BAC

Clone NameB6Ng01-297H13
Chromosome5 (Build37)12 (Build37)
Map Location 87,400,800 - 87,401,46425,924,547 - 25,924,608
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1
Downstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297H13.bB6Ng01-297H13.g
ACCGA092820GA092821
length667622
definitionB6Ng01-297H13.b B6Ng01-297H13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,400,800 - 87,401,464)(25,924,547 - 25,924,608)
sequence
gaattctttctgaatagtcaatcttccacagtgaatagttacccccagcc
aaacaagattttcctaagatcctccattaggggaagaaaagtttcccaag
aattagaatcaaggcaaaacagtgtaaaaggagcagttggtccatattaa
gctcaaacttgcttaagatccttaagagtcttaaatgaaatggatgtact
ttctctttgccgaaggttattgggatcaggtgcgttcactctctaggaaa
agagaaaatcctcatgtcttctgaaatctcctgggcataaggcagagcct
ctcgcactggggacatgtacactgatttagaaggaattaattctcttatg
gggcatgagaaacctccttaacattctcggtaagagatggtatggggcag
tgaaaaaactctccatgctgtcagaaaatgcatttgatggacaggattta
ggagtacaggaaatctaatccggagatgggggaacaaaattcgtatggag
aaggggactcttcaacctcatcacagagacaatagataatagaccttcag
gttctatattttcttttcttccttccttccttccttccttccttccttcc
ttccttccttccttccttcctttctttctttcttttcttctttctttctt
ccttccttcctttcctt
gaattcctgttacctcactcatgatgatattttctacttccatccatttg
cctgaaaaatacatgatgtcctagtattaatagctgaatagtgtcccatt
gtgcaaatgaaccacattttctgtatctattcttcccttgaagaagggtt
gtttctagtttcagcctataatgaataagactgctatgatcacagtggag
cacatgttcttgtgatatggtgaagcacctttttggtatatgcccaagat
tagtatagctgggtcttcaggtagaactatttccaattttctgaggaaac
tccacattgatttccagaatggttgtacaagtttgtcatccaccaacaat
ggagaagagttcttctttctccacatccttgtcagcatacgctgtcacat
gagttttgatcttagctattccaattgttgtaaggtggactctaaggtca
ttttaatttgtatttagttttattttcaatttgcattttaatgttgaaca
tttctttaagtgcttctcagccactcaaacttcctctgttgagaattctc
tgtttagctctgtaccccattttaaattgggttgtttgggtttttttttg
tttgttggttttggttttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87400800_87401464
seq2: B6Ng01-297H13.b_50_716

seq1  GAATTCTTTCTGAATAGTCAATCTTCCACAGTGAATAGTTACCCCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGAATAGTCAATCTTCCACAGTGAATAGTTACCCCCAGCC  50

seq1  AAACAAGATTTTCCTAAGATCCTCCATTAGGGGAAGAAAAGTTTCCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGATTTTCCTAAGATCCTCCATTAGGGGAAGAAAAGTTTCCCAAG  100

seq1  AATTAGAATCAAGGCAAAACAGTGTAAAAGGAGCAGTTGGTCCATATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATCAAGGCAAAACAGTGTAAAAGGAGCAGTTGGTCCATATTAA  150

seq1  GCTCAAACTTGCTTAAGATCCTTAAGAGTCTTAAATGAAATGGATGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAACTTGCTTAAGATCCTTAAGAGTCTTAAATGAAATGGATGTACT  200

seq1  TTCTCTTTGCCGAAGGTTATTGGGATCAGGTGCGTTCACTCTCTAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGCCGAAGGTTATTGGGATCAGGTGCGTTCACTCTCTAGGAAA  250

seq1  AGAGAAAATCCTCATGTCTTCTGAAATCTCCTGGGCATAAGGCAGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATCCTCATGTCTTCTGAAATCTCCTGGGCATAAGGCAGAGCCT  300

seq1  CTCGCACTGGGGACATGTACACTGATTTAGAAGGAATTAATTCTCTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACTGGGGACATGTACACTGATTTAGAAGGAATTAATTCTCTTATG  350

seq1  GGGCATGAGAAACCTCCTTAACATTCTCGGTAAGAGATGGTATGGGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGAGAAACCTCCTTAACATTCTCGGTAAGAGATGGTATGGGGCAG  400

seq1  TGAAAAAACTCTCCATGCTGTCAGAAAATGCATTTGATGGACAGGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAACTCTCCATGCTGTCAGAAAATGCATTTGATGGACAGGATTTA  450

seq1  GGAGTACAGGAAATCTAATCCGGAGATGGGGGAACAAAATTCGTATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACAGGAAATCTAATCCGGAGATGGGGGAACAAAATTCGTATGGAG  500

seq1  AAGGGGACTCTTCAACCTCATCACAGAGACAATAGATAATAGACCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACTCTTCAACCTCATCACAGAGACAATAGATAATAGACCTTCAG  550

seq1  GTTCTATATTTTCTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATTTTCTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  600

seq1  TTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTC-TTTCTTCTTTCTTTCTT  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTTCTTCTTTCTTTCTT  650

seq1  CCTTCCTTCC-TTCCTT  665
      |||||||||| ||||||
seq2  CCTTCCTTCCTTTCCTT  667

seq1: chr12_25924547_25924608
seq2: B6Ng01-297H13.g_656_691 (reverse)

seq1  AACCAAAACCAAAACCAAAAAAAAAAAAAAAAAAAGCAAGCAAGCAAACA  50
      ||||||||||||||||||                          ||||||
seq2  AACCAAAACCAAAACCAA--------------------------CAAACA  24

seq1  AAAAAAAACCCA  62
      ||||||||||||
seq2  AAAAAAAACCCA  36