BAC Information

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BAC

Clone NameB6Ng01-297L14
Chromosome12 (Build37)
Map Location 40,393,912 - 40,512,018
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297L14.bB6Ng01-297L14.g
ACCGA093014GA093015
length1,1911,107
definitionB6Ng01-297L14.b B6Ng01-297L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,510,799 - 40,512,018)(40,393,912 - 40,395,026)
sequence
gaattctttgttcagtaattcaaagagcaaacagagagagggtgcctttt
catcaaaaggttgtgggtttgaaagtttggattttgagaaaattccctgt
cactttcttaccattctgagtaagtgaacattaagcttcacacagatggt
gggaaaaaatgaactagactccaaagctcagccataaaagtcaccgagca
ggtgaattattgtctgggattttattacagtgacttgcagctgcatagca
attgcttctacagaaagtagaagcagaaagctgcttggagaacacctcat
tgaaatacagtaagagaacatgaatattgcactgtttgtttgcatattgg
gcattcaacaagtatacggtcaatatccgttgcttttggcatgatgaaag
gactagtggggaaaatgccagattttttccttcttttgtagcacgagaaa
ggtcattggaaatgaaatatggcaaaacttcagtcactcatttatcttta
tccaccaaataattactgactatgatgtattatggtgggttctcagtaga
aaccagtgaatcagacagacatttctgatgtcatcgtgcttcgaatgatt
cctaacatcaggatgaacatgatgaatggaagcaactcccatataatttg
tgttggatgaagctttctggctgatctgagccatgttcagcatgccatca
gttctgaagtatggtaatacatcaggcacagctagggagagtataaatac
tgatttacaggctccaagccattcctagcaacaaatctagcattggagcc
cagaagtctgcatttgtaagaaacttttcagttttggtaaatggaactcg
attggaaccaggaaatcagacagaaatctgaatttttcttagtgctgctt
gtgttcatgctgacacaccatcagcagcagcagccattcttttaatcttg
aatgtgcctatttaaacttaacctacttgactattcagtaggtatataag
acatgtttgtcatttataggtcgtgggatatcttatatcaccatctacat
ggtgtcagagtctggcccttttgccactggggaatcatctgtatgaatct
gacatttttctctttgagttagagaaggatattagtctgctacattcgat
tcaattcctgaccttaatactttctaaagaaccaaattgat

gaattctttgagatttaaaaattcaatgacttatatttttgcactttttc
tgctgatagcttaagtctccacagctgcttctcacatcttcagcatatat
ctcccatgctcctacagtggtggctgtgactaagagaaggggattaatgc
ctgtaatctcaagcaactgaattccgcaaatgctttagctctctggatcc
ttcttgtatccgtggatgtgttgcatagatgtacgttttctccattccaa
tgtttgtcttctttcattacatctgctccccaatgaagtttatttcaaat
aaattcttagaagtacaaaatcccaaacagtgtagtctgtgttctgatct
ctgacgctatttatatacacagcactggtccattaaaaataattatattc
tctttgttataatgtatcttgttaggttgctattcttgactctctaagaa
gtcttattttgttgaagatatgcggttactttatatggcgagagtgtttt
aagcctctctgtattctcacccttcccagaagagcccttaagatgtgatt
gttatgtaaattgactcttgcttagaatgtgcactggataaaggcacaga
cccttccttactacagtggcacagagagatgctaaacatggtgacagaaa
attcaccatcagcctcttgctctgaataaagtggataggaagtgctgttg
gactaaaggggggttgattttgtgagggtgaaataatcagtgatgtcagg
atgattatttttctttatgaacaatggttaatactagaatttaggttcac
taagatggagacatgaagtctatggcaggaatgacactggagttgctttt
gaacctgttaattttgagatgcttattagaccctttttagaaaggtcaag
caggtacaaaggactggagactggtgaaaggtcagaccatggcatatata
aaaaggattcaaagccaatggaggggtcagagagatggctcaaggttaaa
gcacaatgctgcagtctggtacctggagcagactactggtagagagagtg
ccaactctggtaagttgtcttttgacttgcacttgagccactgttgtatt
tataccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40510799_40512018
seq2: B6Ng01-297L14.b_50_1240 (reverse)

seq1  ATCAATTTGGTTCTTTTAGAAAATAAATTTAGAGTCAGAAATTTTAAATC  50
      ||||||||||||| |||||||| ||   |||  ||||| ||  || ||||
seq2  ATCAATTTGGTTC-TTTAGAAAGTA---TTAAGGTCAGGAA--TTGAATC  44

seq1  AGAATGGTGAGCAAGGCTAAATATCTTTCTCTAACTCCAAAGAGAAAAAT  100
       |||||   ||| || || |||||| |||||||||| |||||||||||||
seq2  -GAATG--TAGC-AGACT-AATATCCTTCTCTAACT-CAAAGAGAAAAAT  88

seq1  GGTCAGATTTCATACAGATTGGAATTTCCCCAAGTGGGCAAAAAGGGCAG  150
       |||||| |||||||||||  ||  |||||| ||| ||||||| || |||
seq2  -GTCAGA-TTCATACAGAT--GA--TTCCCC-AGT-GGCAAAAGGGCCAG  130

seq1  ACTTCTGACACCATGTAAGATGGTGAATATAAGAATATCCCACGACCCTA  200
      || ||||||||||||| |||||||| ||||||| ||||||||||| ||||
seq2  AC-TCTGACACCATGT-AGATGGTG-ATATAAG-ATATCCCACGA-CCTA  175

seq1  TAAATGACAAAACATGTCTTAATATACCTAACTGAATAGTCAAGTAGGTT  250
      |||||||| ||||||||||| |||||||| ||||||||||||||||||||
seq2  TAAATGAC-AAACATGTCTT-ATATACCT-ACTGAATAGTCAAGTAGGTT  222

seq1  AAGTTTAAATAGGCACAATTCAAGATTAAAAGAATGGCTGCTGCTGCTGA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGTTTAAATAGGCAC-ATTCAAGATTAAAAGAATGGCTGCTGCTGCTGA  271

seq1  TGGTGTGTCAGCATGAACACAAGCAGCACTAAGAAAAATTCAGATTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCAGCATGAACACAAGCAGCACTAAGAAAAATTCAGATTTCTG  321

seq1  TCTGATTTCCTGGTTCCAATCGAGTTCCATTTACCAAAACTGAAAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTCCTGGTTCCAATCGAGTTCCATTTACCAAAACTGAAAAGTTT  371

seq1  CTTACAAATGCAGACTTCTGGGCTCCAATGCTAGATTTGTTGCTAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATGCAGACTTCTGGGCTCCAATGCTAGATTTGTTGCTAGGAAT  421

seq1  GGCTTGGAGCCTGTAAATCAGTATTTATACTCTCCCTAGCTGTGCCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAGCCTGTAAATCAGTATTTATACTCTCCCTAGCTGTGCCTGAT  471

seq1  GTATTACCATACTTCAGAACTGATGGCATGCTGAACATGGCTCAGATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACCATACTTCAGAACTGATGGCATGCTGAACATGGCTCAGATCAG  521

seq1  CCAGAAAGCTTCATCCAACACAAATTATATGGGAGTTGCTTCCATTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCTTCATCCAACACAAATTATATGGGAGTTGCTTCCATTCATC  571

seq1  ATGTTCATCCTGATGTTAGGAATCATTCGAAGCACGATGACATCAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATCCTGATGTTAGGAATCATTCGAAGCACGATGACATCAGAAAT  621

seq1  GTCTGTCTGATTCACTGGTTTCTACTGAGAACCCACCATAATACATCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGATTCACTGGTTTCTACTGAGAACCCACCATAATACATCATA  671

seq1  GTCAGTAATTATTTGGTGGATAAAGATAAATGAGTGACTGAAGTTTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAATTATTTGGTGGATAAAGATAAATGAGTGACTGAAGTTTTGCC  721

seq1  ATATTTCATTTCCAATGACCTTTCTCGTGCTACAAAAGAAGGAAAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTTCCAATGACCTTTCTCGTGCTACAAAAGAAGGAAAAAATC  771

seq1  TGGCATTTTCCCCACTAGTCCTTTCATCATGCCAAAAGCAACGGATATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTTCCCCACTAGTCCTTTCATCATGCCAAAAGCAACGGATATTG  821

seq1  ACCGTATACTTGTTGAATGCCCAATATGCAAACAAACAGTGCAATATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTATACTTGTTGAATGCCCAATATGCAAACAAACAGTGCAATATTCA  871

seq1  TGTTCTCTTACTGTATTTCAATGAGGTGTTCTCCAAGCAGCTTTCTGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTACTGTATTTCAATGAGGTGTTCTCCAAGCAGCTTTCTGCTT  921

seq1  CTACTTTCTGTAGAAGCAATTGCTATGCAGCTGCAAGTCACTGTAATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTGTAGAAGCAATTGCTATGCAGCTGCAAGTCACTGTAATAAA  971

seq1  ATCCCAGACAATAATTCACCTGCTCGGTGACTTTTATGGCTGAGCTTTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGACAATAATTCACCTGCTCGGTGACTTTTATGGCTGAGCTTTGG  1021

seq1  AGTCTAGTTCATTTTTTCCCACCATCTGTGTGAAGCTTAATGTTCACTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTTCATTTTTTCCCACCATCTGTGTGAAGCTTAATGTTCACTTA  1071

seq1  CTCAGAATGGTAAGAAAGTGACAGGGAATTTTCTCAAAATCCAAACTTTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATGGTAAGAAAGTGACAGGGAATTTTCTCAAAATCCAAACTTTC  1121

seq1  AAACCCACAACCTTTTGATGAAAAGGCACCCTCTCTCTGTTTGCTCTTTG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACAACCTTTTGATGAAAAGGCACCCTCTCTCTGTTTGCTCTTTG  1171

seq1  AATTACTGAACAAAGAATTC  1220
      ||||||||||||||||||||
seq2  AATTACTGAACAAAGAATTC  1191


seq1: chr12_40393912_40395026
seq2: B6Ng01-297L14.g_67_1173

seq1  GAATTCTTTGAGATTTAAAAATTCAATGACTTATATTTTTGCACTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGATTTAAAAATTCAATGACTTATATTTTTGCACTTTTTC  50

seq1  TGCTGATAGCTTAAGTCTCCACAGCTGCTTCTCACATCTTCAGCATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATAGCTTAAGTCTCCACAGCTGCTTCTCACATCTTCAGCATATAT  100

seq1  CTCCCATGCTCCTACAGTGGTGGCTGTGACTAAGAGAAGGGGATTAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGCTCCTACAGTGGTGGCTGTGACTAAGAGAAGGGGATTAATGC  150

seq1  CTGTAATCTCAAGCAACTGAATTCCGCAAATGCTTTAGCTCTCTGGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCTCAAGCAACTGAATTCCGCAAATGCTTTAGCTCTCTGGATCC  200

seq1  TTCTTGTATCCGTGGATGTGTTGCATAGATGTACGTTTTCTCCATTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTATCCGTGGATGTGTTGCATAGATGTACGTTTTCTCCATTCCAA  250

seq1  TGTTTGTCTTCTTTCATTACATCTGCTCCCCAATGAAGTTTATTTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTTCTTTCATTACATCTGCTCCCCAATGAAGTTTATTTCAAAT  300

seq1  AAATTCTTAGAAGTACAAAATCCCAAACAGTGTAGTCTGTGTTCTGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTAGAAGTACAAAATCCCAAACAGTGTAGTCTGTGTTCTGATCT  350

seq1  CTGACGCTATTTATATACACAGCACTGGTCCATTAAAAATAATTATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGCTATTTATATACACAGCACTGGTCCATTAAAAATAATTATATTC  400

seq1  TCTTTGTTATAATGTATCTTGTTAGGTTGCTATTCTTGACTCTCTAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTATAATGTATCTTGTTAGGTTGCTATTCTTGACTCTCTAAGAA  450

seq1  GTCTTATTTTGTTGAAGATATGCGGTTACTTTATATGGCGAGAGTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTTGTTGAAGATATGCGGTTACTTTATATGGCGAGAGTGTTTT  500

seq1  AAGCCTCTCTGTATTCTCACCCTTCCCAGAAGAGCCCTTAAGATGTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTCTGTATTCTCACCCTTCCCAGAAGAGCCCTTAAGATGTGATT  550

seq1  GTTATGTAAATTGACTCTTGCTTAGAATGTGCACTGGATAAAGGCACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTAAATTGACTCTTGCTTAGAATGTGCACTGGATAAAGGCACAGA  600

seq1  CCCTTCCTTACTACAGTGGCACAGAGAGATGCTAAACATGGTGACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTACTACAGTGGCACAGAGAGATGCTAAACATGGTGACAGAAA  650

seq1  ATTCACCATCAGCCTCTTGCTCTGAATAAAGTGGATAGGAAGTGCTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCATCAGCCTCTTGCTCTGAATAAAGTGGATAGGAAGTGCTGTTG  700

seq1  GACTAAAGGGGGGTTGATTTTGTGAGGGTGAAATAATCAGTGATGTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGGGGGGTTGATTTTGTGAGGGTGAAATAATCAGTGATGTCAGG  750

seq1  ATGATTATTTTTCTTTATGAACAATGGTTAATACTAGAATTTAGGTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATTTTTCTTTATGAACAATGGTTAATACTAGAATTTAGGTTCAC  800

seq1  TAAGATGGAGACATGAAGTCTATGGCAGGAATGACACTGGAGTTGCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGAGACATGAAGTCTATGGCAGGAATGACACTGGAGTTGCTTTT  850

seq1  GAACCTGTTAATTTTGAGATGCTTATTAGACCCTTTTTAGAAAGGTCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTTAATTTTGAGATGCTTATTAGACCCTTTTTAGAAAGGTCAAG  900

seq1  CAGGGTACAAAGGACTGGAGACTGGTGAAAGGTCAGAACATGGCATATAT  950
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CA-GGTACAAAGGACTGGAGACTGGTGAAAGGTCAGACCATGGCATATAT  949

seq1  AAAAAGGATTCAAAAGCCAATGGAGGGGTCAGAGAGATGGCTCAAGGGTA  1000
      ||||||||||| ||||||||||||||||||||||||||||||||| ||| 
seq2  AAAAAGGATTC-AAAGCCAATGGAGGGGTCAGAGAGATGGCTCAA-GGTT  997

seq1  AAAGCAC-ATGCTGCCAAGTCTGGTAACCTGAGCAGGACCTACCTGGTAG  1049
      ||||||| |||||||  ||||||||| |  ||||||   ||| |||||||
seq2  AAAGCACAATGCTGC--AGTCTGGTACCTGGAGCAG--ACTA-CTGGTAG  1042

seq1  AAGGAGAGTGCCAACTCTGGTAGGTTGTCTTTTGACCTGCACTTGAG-CA  1098
      |  ||||||||||||||||||| ||||||||||||| |||||||||| ||
seq2  A--GAGAGTGCCAACTCTGGTAAGTTGTCTTTTGACTTGCACTTGAGCCA  1090

seq1  CTGTGGTAATTATACCC  1115
      |||| ||| ||||||||
seq2  CTGTTGTATTTATACCC  1107


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