BAC Information

Click to search

BAC

Clone NameB6Ng01-297N08
Chromosome12 (Build37)
Map Location 80,957,481 - 81,044,019
singlet/doubletdoublet
Overlap geneLOC435309
Upstream geneAtp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968
Downstream geneLOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297N08.bB6Ng01-297N08.g
ACCGA093096GA093097
length692487
definitionB6Ng01-297N08.b B6Ng01-297N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,043,328 - 81,044,019)(80,957,481 - 80,957,973)
sequence
gaattctggcctccttgttctgggatcccccaccttctcataggcgtcct
gttcctctcacacacctggtgtctcagtgaacggccactttctagatggc
ctctccagccacaggacatctgtgttcctcagctctttggtttcctcttc
acatatttgggagttatatgacactccgtggagagtgatgctggcagtct
aagaaatacttagttcagagcccaaggccactgtggtttactgaagctcc
atttcatctgggctagaggtgaatgcttccctcccgagaccccagcaggc
ggggggtgtagcaaagttcaaggaacagtcgcttccaccgaggctgagtg
tttggcacacacagcctgacaacacactaaaagacagtccaggtccagga
ccagcatcagcgggcagggcaaggcagactgaaggagtggcctgagggga
gaggctatgtccctgaatccttgctccttcctaatgatggtttgtagtgg
caccattaacccttcaaatgctgtcattgcaagtcctacagtcacctgac
accacatgtaattaaaacctaactgtttgtagttaacttttctttttatg
acctcatagctgtctgtaaggcctccatcctgggtcaccttattttcaga
gagaaacccagaggtatgctgagggggggagagagagagaga
tagggagatgagatgggatgggagtgttgttattgaacatgtagatttcc
tggccatccagaactaaggaggtctgtttctctggaggcagagcctgtag
gaaagctcttttagcaaacccttaaggctattaataaattcaataaaatt
tgagacttcaggcttagggagtgggagaggagagtgggtgtgcatctggc
tcttggcatctggaataaacagctggcgcccgtcccagttggcttgagaa
ccggcagctgttttacctcgagatataacttcttgacaggaaaaagaggt
gggaattctgggtttcgagctactcactgacaacacaattggctctgcat
tggatctcaggatgtctccactttgcagccttgagatttgacccaagtca
gcataaacacatgcccagatagacatatgtcccatcaaggagaaagtcct
catggtttgggccaagagtgcatccagtatggtacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81043328_81044019
seq2: B6Ng01-297N08.b_49_740 (reverse)

seq1  TCTCTCTCTCTCTCCCCCCCTCAGCATACCTCTGGGTTTCTCTCTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCCCCCCCTCAGCATACCTCTGGGTTTCTCTCTGAAAA  50

seq1  TAAGGTGACCCAGGATGGAGGCCTTACAGACAGCTATGAGGTCATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGACCCAGGATGGAGGCCTTACAGACAGCTATGAGGTCATAAAAA  100

seq1  GAAAAGTTAACTACAAACAGTTAGGTTTTAATTACATGTGGTGTCAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTAACTACAAACAGTTAGGTTTTAATTACATGTGGTGTCAGGTG  150

seq1  ACTGTAGGACTTGCAATGACAGCATTTGAAGGGTTAATGGTGCCACTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGACTTGCAATGACAGCATTTGAAGGGTTAATGGTGCCACTACA  200

seq1  AACCATCATTAGGAAGGAGCAAGGATTCAGGGACATAGCCTCTCCCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCATTAGGAAGGAGCAAGGATTCAGGGACATAGCCTCTCCCCTCA  250

seq1  GGCCACTCCTTCAGTCTGCCTTGCCCTGCCCGCTGATGCTGGTCCTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCCTTCAGTCTGCCTTGCCCTGCCCGCTGATGCTGGTCCTGGAC  300

seq1  CTGGACTGTCTTTTAGTGTGTTGTCAGGCTGTGTGTGCCAAACACTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGTCTTTTAGTGTGTTGTCAGGCTGTGTGTGCCAAACACTCAGC  350

seq1  CTCGGTGGAAGCGACTGTTCCTTGAACTTTGCTACACCCCCCGCCTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGGAAGCGACTGTTCCTTGAACTTTGCTACACCCCCCGCCTGCTG  400

seq1  GGGTCTCGGGAGGGAAGCATTCACCTCTAGCCCAGATGAAATGGAGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCGGGAGGGAAGCATTCACCTCTAGCCCAGATGAAATGGAGCTTC  450

seq1  AGTAAACCACAGTGGCCTTGGGCTCTGAACTAAGTATTTCTTAGACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCACAGTGGCCTTGGGCTCTGAACTAAGTATTTCTTAGACTGCC  500

seq1  AGCATCACTCTCCACGGAGTGTCATATAACTCCCAAATATGTGAAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACTCTCCACGGAGTGTCATATAACTCCCAAATATGTGAAGAGGA  550

seq1  AACCAAAGAGCTGAGGAACACAGATGTCCTGTGGCTGGAGAGGCCATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAGCTGAGGAACACAGATGTCCTGTGGCTGGAGAGGCCATCTA  600

seq1  GAAAGTGGCCGTTCACTGAGACACCAGGTGTGTGAGAGGAACAGGACGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGCCGTTCACTGAGACACCAGGTGTGTGAGAGGAACAGGACGCC  650

seq1  TATGAGAAGGTGGGGGATCCCAGAACAAGGAGGCCAGAATTC  692
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAGGTGGGGGATCCCAGAACAAGGAGGCCAGAATTC  692

seq1: chr12_80957481_80957973
seq2: B6Ng01-297N08.g_70_562

seq1  GAATTCTAGGGAGATGAGATGGGATGGGAGTGTTGTTATTGAACATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGAGATGAGATGGGATGGGAGTGTTGTTATTGAACATGTAG  50

seq1  ATTTCCTGGCCATCCAGAACTAAGGAGGTCTGTTTCTCTGGAGGCAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGGCCATCCAGAACTAAGGAGGTCTGTTTCTCTGGAGGCAGAGC  100

seq1  CTGTAGGAAAGCTCTTTTAGCAAACCCTTAAGGCTATTAATAAATTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAAAGCTCTTTTAGCAAACCCTTAAGGCTATTAATAAATTCAAT  150

seq1  AAAATTTGAGACTTCAGGCTTAGGGAGTGGGAGAGGAGAGTGGGTGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGAGACTTCAGGCTTAGGGAGTGGGAGAGGAGAGTGGGTGTGCA  200

seq1  TCTGGCTCTTGGCATCTGGAATAAACAGCTGGCGCCCGTCCCAGTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTTGGCATCTGGAATAAACAGCTGGCGCCCGTCCCAGTTGGCT  250

seq1  TGAGAACCGGCAGCTGTTTTACCTCGAGATATAACTTCTTGACAGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCGGCAGCTGTTTTACCTCGAGATATAACTTCTTGACAGGAAAA  300

seq1  AGAGGTGGGAATTCTGGGTTTCGAGCTACTCACTGACAACACAATTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGAATTCTGGGTTTCGAGCTACTCACTGACAACACAATTGGCT  350

seq1  CTGCATTGGATCTCAGGATGTCTCCACTTTGCAGCCTTGAGATTTGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGGATCTCAGGATGTCTCCACTTTGCAGCCTTGAGATTTGACCC  400

seq1  AAGTCAGCATAAACACATGCCCAGATAGACATATGTCCCATCAAGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCATAAACACATGCCCAGATAGACATATGTCCCATCAAGGAGAA  450

seq1  AGTCCTCATGGTTTGGGCCAGGAGTGCAGCCAGTATGGCACAG  493
      |||||||||||||||||||| ||||||| ||||||||| ||||
seq2  AGTCCTCATGGTTTGGGCCAAGAGTGCATCCAGTATGGTACAG  493