BAC Information

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BAC

Clone NameB6Ng01-298M06
Chromosome12 (Build37)
Map Location 55,205,541 - 55,366,626
singlet/doubletdoublet
Overlap geneEgln3
Upstream geneAkap6, Npas3
Downstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298M06.bB6Ng01-298M06.g
ACCGA093789GA093790
length1,1241,162
definitionB6Ng01-298M06.b B6Ng01-298M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,205,541 - 55,206,120)(55,365,468 - 55,366,626)
sequence
gaattctaccttaagtggttaacttctctgagcctggcacaaaatggaag
cctccctttaccagaagggcctccgctcttctgaccttgtctggggagcc
agaaaccccacactctataactagagaaggttgagtagtccttggaagac
ctataagttcaacttcctcttttcccaataagagcccacacagcaagtac
ctgggatttctggaatacccctccatgcacatgagacagaatgttataga
acattaaacgctaaccaatggttttcatttaccctgaaaacttcttccca
ctctccaaagtccatacaaagtcctgattcaccgggaataaaatgtatgc
atacaagcctaccccgtataaaggtatgcacacaagctaagatcatttca
gagagctgtttcagagaaggcctttgtaacactaacatcctcagagaagt
gtgtgcgtatgcgcacacacacacacacacacacacacacacactcccag
ctggcctgggatcccacagaacccattctgaacaccacttcattcttcca
gcctgagaaggagaaagtgaacaacttggaaccacacttggaccctaaaa
caaatatcacaagggtttatttgggttacacctctacattgtggtctatc
actgaaagaagtcaggacaagaactcaaacagggcaggagcctagaggca
ggagatgaggcagaggccacagatgggtgttgtttattggcttgcttctc
atggtttgctcagcctgctttcttatagaacccaggaccaccatcaatca
ttaaataagaaaatggccttcagccgggcgtggtggcacatgcctttagt
cccagcactaaaggaggcagaggcaggcagatttctgagttccaggacag
ccagggctacacagagaaatcctgtctcaaacaaacaaacaaacaaacaa
caaacaaacaacaaccaacaatggccttcatttttctgagattcctcttc
cctgagaccctagcttgtgtcagatgacataaaactagcagcactcatgg
gtttctctcagagtggcaagtgtgagatgaacaaaagccagaacaggttg
acacgcctcattcgagtgacgtgc
gaattcctccctcccccaacccattcctaggactggtggcctggtcctaa
acatggctttgcttccatgcgggaggaggagaaggaggagtaacagtgac
tgtggttgtctgaagcaggggtggggacattctcggaccgacactgagac
tttataagaagtggaattgcccaaaagaagattaatcattcaaagcatat
ctcccctccttaaaaatagaacggtgattgagcatgtgtgcaagtgtgca
cgtgttcatccccacacacattttgttgtctattttaaaccattcaagcg
tgtttttcagtttgccttttgaactgtaaatgagttttaaatcccaagaa
cacctctattttgaatagtctggcaggccctcttattaactaatggggat
ggcgatggctgcatttttaacttggagagtgcatagttgtcttatctagg
aaaggcttcaagcgagctaagggggagcactctgctacttgtttccagat
tgtagggtgggagtgaggctaaggctctaagggatgacgttggcatgtcc
catctgccagagcttagacaaagcctccctcctctccaccaatcacaaga
ataaaatctctgctgctagtgcgaccatctggatctcctgttgtctcctg
tattcacacctggagagtcggggcgagtccttgatggatgctttacaaga
ctgcctcataaaatcaaaggacagatgaacaatatttttcaaagactgga
aatgatagaacaacattcacagctttcattactgctttgagaataataat
cccagcccctaggggctggtaggagtgcttttgttctcttatgtgtcaca
cgattggaactaagaataagataccagttaaagaggtccccagaatctta
cgaggaagcggggtcatctctggatttagtcacttgtctttcagagagca
attgatacttgggttttatggccggcaagcccttctgttccaagtagcca
tgaaaacggacgcttctgaagggtcccacactgtttcctggagtacatgg
accactagccatgtctacacacgtgctcagtgtgtgctagcaggtcctct
ttccttctcacttcccaagctgcgatccttgtctgcagttcattcagtct
gagagaatactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55205541_55206120
seq2: B6Ng01-298M06.b_602_1170

seq1  AGAAGGAGAAAGTGAACAACTTGGAACCACACTTGGACCCTAAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAAAGTGAACAACTTGGAACCACACTTGGACCCTAAAACAAAT  50

seq1  ATCACAAGGGTTTATTTGGGTTACACCTCTACATTGTGGTCTATCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGGGTTTATTTGGGTTACACCTCTACATTGTGGTCTATCACTGA  100

seq1  AAGAAGTCAGGACAAGAACTCAAACAGGGCAGGAGCCTAGAGGCAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCAGGACAAGAACTCAAACAGGGCAGGAGCCTAGAGGCAGGAGA  150

seq1  TGAGGCAGAGGCCACAGATGGGTGTTGTTTATTGGCTTGCTTCTCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGAGGCCACAGATGGGTGTTGTTTATTGGCTTGCTTCTCATGGT  200

seq1  TTGCTCAGCCTGCTTTCTTATAGAACCCAGGACCACCATCAATCATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCCTGCTTTCTTATAGAACCCAGGACCACCATCAATCATTAAA  250

seq1  TAAGAAAATGGCCTTCAGCCGGGCGTGGTGGCACATGCCTTTAGTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATGGCCTTCAGCCGGGCGTGGTGGCACATGCCTTTAGTCCCAG  300

seq1  CACT-AAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGACAGCCAGG  349
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGACAGCCAGG  350

seq1  GCTACACAGAGAAATCCTGTCTCAAAACAAAACAAAACAAAACAAACAAA  399
      ||||||||||||||||||||||||||   |||||||   |||||||| ||
seq2  GCTACACAGAGAAATCCTGTCTCAAA--CAAACAAA--CAAACAAAC-AA  395

seq1  CAAACAAACAAACAAACAAACAAATGGCCTTCAATTTTCTGAGATTTCCT  449
      ||||||||| ||||| |||   ||||||||||| |||||||||| |||||
seq2  CAAACAAAC-AACAACCAA--CAATGGCCTTCATTTTTCTGAGA-TTCCT  441

seq1  CTTCCCCTGAGACCCTAGCTTGTGTCAGGATGACATAAAACTAGCCAGCA  499
      ||| ||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CTT-CCCTGAGACCCTAGCTTGTGTCA-GATGACATAAAACTAG-CAGCA  488

seq1  CTCATGGGTTTCTCTCAGAGTGGAAAGTGTGAGGATGGACAAAAG-CAG-  547
      ||||||||||||||||||||||| |||||||| |||| ||||||| ||| 
seq2  CTCATGGGTTTCTCTCAGAGTGGCAAGTGTGA-GATGAACAAAAGCCAGA  537

seq1  ACAGGGTGGCACGCCTCA-TCGAGTGGCACGTGC  580
      ||||| || ||||||||| |||||||  ||||||
seq2  ACAGGTTGACACGCCTCATTCGAGTG--ACGTGC  569

seq1: chr12_55365468_55366626
seq2: B6Ng01-298M06.g_68_1229 (reverse)

seq1  CAGTA-TCTCTCAGACTTGAAGGAACAGCAGACA--GACTGCAGCTTGGG  47
      ||||| |||||||||| |||| |||| |||||||  ||  ||||||||||
seq2  CAGTATTCTCTCAGAC-TGAATGAACTGCAGACAAGGATCGCAGCTTGGG  49

seq1  GAGTGAGGAAGGAAGAGGCCCTGGCTA-AGCACACTGAAGGCACGTGTGT  96
       |||||| | | |||||| ||| ||||   ||||||||  ||||||||||
seq2  AAGTGAGAAGGAAAGAGGACCT-GCTAGCACACACTGA--GCACGTGTGT  96

seq1  AGACATGGCTAGT-GTCATGGTAACTCAG--AACAGTGTGGGACCCTTCA  143
      ||||||||||||| |||   |||   |||  |||||||||||||||||||
seq2  AGACATGGCTAGTGGTCCATGTACTCCAGGAAACAGTGTGGGACCCTTCA  146

seq1  GAAGCGTCCTTTTTCATGGCTACTTGGAACAGAAGGGCTTGCCGGCCATA  193
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGTCCGTTTTCATGGCTACTTGGAACAGAAGGGCTTGCCGGCCATA  196

seq1  AAACCCAAGTATCATTTGCTCTCTGAAAGACAAGTGACTAAATCCAGAGA  243
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAACCCAAGTATCAATTGCTCTCTGAAAGACAAGTGACTAAATCCAGAGA  246

seq1  TGACCCCGCTTCCTCGTAAGATTCTGGGGACCTCTTTAACTGGTATCTTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCGCTTCCTCGTAAGATTCTGGGGACCTCTTTAACTGGTATCTTA  296

seq1  TTCTTAGTTCCAATCGTGTGACACATAAGAGAACAAAAGCACTCCTACCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTTCCAATCGTGTGACACATAAGAGAACAAAAGCACTCCTACCA  346

seq1  GCCCCTAGGGGCTGGGATTATTATTCTCAAAGCAGTAATGAAAGCTGTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAGGGGCTGGGATTATTATTCTCAAAGCAGTAATGAAAGCTGTGA  396

seq1  ATGTTGTTCTATCATTTCCAGTCTTTGAAAAATATTGTTCATCTGTCCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTCTATCATTTCCAGTCTTTGAAAAATATTGTTCATCTGTCCTT  446

seq1  TGATTTTATGAGGCAGTCTTGTAAAGCATCCATCAAGGACTCGCCCCGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATGAGGCAGTCTTGTAAAGCATCCATCAAGGACTCGCCCCGAC  496

seq1  TCTCCAGGTGTGAATACAGGAGACAACAGGAGATCCAGATGGTCGCACTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTGTGAATACAGGAGACAACAGGAGATCCAGATGGTCGCACTA  546

seq1  GCAGCAGAGATTTTATTCTTGTGATTGGTGGAGAGGAGGGAGGCTTTGTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGATTTTATTCTTGTGATTGGTGGAGAGGAGGGAGGCTTTGTC  596

seq1  TAAGCTCTGGCAGATGGGACATGCCAACGTCATCCCTTAGAGCCTTAGCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTGGCAGATGGGACATGCCAACGTCATCCCTTAGAGCCTTAGCC  646

seq1  TCACTCCCACCCTACAATCTGGAAACAAGTAGCAGAGTGCTCCCCCTTAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCACCCTACAATCTGGAAACAAGTAGCAGAGTGCTCCCCCTTAG  696

seq1  CTCGCTTGAAGCCTTTCCTAGATAAGACAACTATGCACTCTCCAAGTTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTTGAAGCCTTTCCTAGATAAGACAACTATGCACTCTCCAAGTTAA  746

seq1  AAATGCAGCCATCGCCATCCCCATTAGTTAATAAGAGGGCCTGCCAGACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGCCATCGCCATCCCCATTAGTTAATAAGAGGGCCTGCCAGACT  796

seq1  ATTCAAAATAGAGGTGTTCTTGGGATTTAAAACTCATTTACAGTTCAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATAGAGGTGTTCTTGGGATTTAAAACTCATTTACAGTTCAAAA  846

seq1  GGCAAACTGAAAAACACGCTTGAATGGTTTAAAATAGACAACAAAATGTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACTGAAAAACACGCTTGAATGGTTTAAAATAGACAACAAAATGTG  896

seq1  TGTGGGGATGAACACGTGCACACTTGCACACATGCTCAATCACCGTTCTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGATGAACACGTGCACACTTGCACACATGCTCAATCACCGTTCTA  946

seq1  TTTTTAAGGAGGGGAGATATGCTTTGAATGATTAATCTTCTTTTGGGCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGGAGGGGAGATATGCTTTGAATGATTAATCTTCTTTTGGGCAA  996

seq1  TTCCACTTCTTATAAAGTCTCAGTGTCGGTCCGAGAATGTCCCCACCCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCTTATAAAGTCTCAGTGTCGGTCCGAGAATGTCCCCACCCCT  1046

seq1  GCTTCAGACAACCACAGTCACTGTTACTCCTCCTTCTCCTCCTCCCGCAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGACAACCACAGTCACTGTTACTCCTCCTTCTCCTCCTCCCGCAT  1096

seq1  GGAAGCAAAGCCATGTTTAGGACCAGGCCACCAGTCCTAGGAATGGGTTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAAGCCATGTTTAGGACCAGGCCACCAGTCCTAGGAATGGGTTG  1146

seq1  GGGGAGGGAGGAATTC  1159
      ||||||||||||||||
seq2  GGGGAGGGAGGAATTC  1162